Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

5554336 .. 5556522

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1068600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGTCACAAGAAGGTGAAGTTTTGGGAGGTTCGGTGAAGAAGCGGAAGCTGGACGGGGTGGGATCTTCCGAGGTTCTGAGTCCTCAGCCGCTGCGGCAGGTGAGAGCCCATCAGAGCTGTAAGCAGTTTTGGAAGGCTGGGGATTATGAAGGAGCTCCTTGCAGCGATAATCATACTTCTGCTGCTGGTGGGATGGACCGTGTAAGGGTTCATCCCAGATTTCTGCATTCCAATGCAACAAGTCACAAGTGGGCTCTCGGCGCTTTTGCCGAGCTGTTAGACAATGCATTGGATGAGGTTTGCAGTGGTGCTACGTACGTTAATGTCGATGTGCTTGAAAGCAAGAAAGATGGAAGCAGAATGTTGCTGATCCAAGATGATGGCGGTGGTATGGATCCGAAAAAGATGCGACACTGCATGTCCTTGGGGTATTCGGTGAAAAGCAAAGTTGCTAACACTATCGGACAGTATGGAAACGGTTTTAAGACGAGTACTATGAGGCTAGGAGCAGATGTGATCGTGTTTTCGCGCTGCGAAGGAAAAGATGGAAAAAGCGATACGCGGAGCATCGGGTTGCTGTCTTACACGTTCTTGAAGAGCACGGGAAAGGAAGACATTGTAGTTCCCATGCTTGATTACGAGAAGAGAGGAGGAGGAGCCTGGCGCAAAATGTTTCAATCCTCCGAAAGTTCTGAAAGTGATTGGAAGAAAAATGTGGAGACAATAGTTCAGTGGTCGCCATTTTCTAGCGAAGAAGAGCTGCATCGTCAGTTCTTAATGATTAAAAACCATGGCACCCAAATAATCATATACAACCTTTGGGAGGACGACGAAGATCAGTTGGAGCTTGATTTTGACACCGACCCTCATGATATTCAACTCAAAGGTGTCAATCGAGACGAGAAGAATATACAAATGGCTCAAGATTATTCCAACTCGCGGGTTTTCTTGACCTACCAGCACTCGTTGAGGAGCTATGCATCGATTCTCTATTTGCGGCTTCCTCCTAACTTTCGGATCATCCTTCGCGGGAAAGAAGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAGCAAGTCACGTATCGGCCAACCGGTGCTGACGGGATCCAAACAAACGCAAATGCGATTGCTGTTGTCACCATCGGGTTTGTAAAGGATGCAAAATCTCATATCGACGTCCAGGGGTTCAATGTTTATCACAAGAATCGATTGATTAAGCCGTTTTGGAGGCTTTGGAATGCTGCAGGAAGTGACGGCAGGGGTGTTATGGGTGTTTTAGAAGCTAATTTTGTTGAACCAGCTCATGATAAGCAGGGGTTTGAGCGTACAACAGTTCTTTCGAGACTCGAGAAACGATTGTTAATTATGCAGAAGAATTACTGGAGTACTAACTGCCACGAAATTGGGTATGCTCCGCGACGTAATAAGAAGATCATTAACGACTCTGCAAATCGTAAAGAAACTAGTCCCAATCCTCCATCTAACGCGGAGGCTACTACGTCAGGCAGCAAGAAGAGACCATTTTCGGGTCGTGATTCACCCGCACTTCAGAGTGTTGGTTCAAAAGCTTCCGAAAGGATCACCAACGATGGAGTCCAAACCCCCAAGCAATCTGGGACATTAGGATCATCAAGGTCTTATGAACCATCGGCACCACCTTCGGCAGCCAATGTTAGCGATGCAGGCATGCATGTTACCATGTCTGATAAGCAAGTGGGTGGCAGACATCATGAGGGATTTGCTGCTAAAGAAGACTCTGCGAAAGACCGCCCACGTGTTGCAACTCCGTTATCTTCACATACGGAAGATACTGAACAATCTTGTTCACCAAGTAGCCCAGGAGCCAATTCACTGGACGGTCATGATGTCAATGGTGGGCGTTCCCGCTTGGAGCCTGTTCGAGTTGTAGGGGTGCAGCAATTGAAAATAGCATATATCAAACTCAAGAAAATTTTGGAGAAAAAGGATCAATGGTGCAAGTCACTTGAAACTCAGCTCCTAGCGTCAAAACAAAAAATTACAGACATGAACAATGAACAAGATAACCTAATTGGCATATTCTCCGAGGAGAGGGAGCGTCGAGACAAGGAGGAGAAGAGTTTGAGAGAGAAGCTGAAGGATGCAACATATACCATTCAACAATTGGAAAAGCAACTCGAAGCAATCAAGTCCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

729

Amino Acids

81.25

Weight (kDa)

8.68

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	87 - 206	2.1e-16	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	321 - 464	2.4e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
AatII	GACGTC	1 cut(s)	1188
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	2 cut(s)	794, 1660
AccII	CGCG	6 cut(s)	529, 562, 940, 1029, 1426, 1496
AcoI	YGGCCR	1 cut(s)	1094
AcsI	RAATTY	1 cut(s)	1959
AcuI	CTGAAG	2 cut(s)	1541, 2144
AcvI	CACGTG	1 cut(s)	1784
AcyI	GRCGYC	1 cut(s)	1185
AfaI	GTAC	4 cut(s)	317, 493, 1336, 1396
AfiI	CCNNNNNNNGG	5 cut(s)	205, 823, 939, 1535, 2079
AflIII	ACRYGT	2 cut(s)	585, 1783
AgeI	ACCGGT	1 cut(s)	1100
AhlI	ACTAGT	1 cut(s)	1472
AjnI	CCWGG	3 cut(s)	659, 1188, 1846
Alw21I	GWGCWC	3 cut(s)	157, 602, 1047
Alw26I	GTCTC	5 cut(s)	713, 891, 1345, 1519, 2085
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	1355
AoxI	GGCC	1 cut(s)	1094
ApoI	RAATTY	1 cut(s)	1959
AsiGI	ACCGGT	1 cut(s)	1100
AspLEI	GCGC	3 cut(s)	263, 531, 666
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	8 cut(s)	26, 46, 112, 448, 1138, 1539, 1582, 1827
AvaI	CYCGRG	1 cut(s)	1355
AvaII	GGWCC	1 cut(s)	196
BamHI	GGATCC	2 cut(s)	394, 1113
BanI	GGYRCC	2 cut(s)	794, 1660
BanII	GRGCYC	3 cut(s)	109, 157, 256
BbrPI	CACGTG	1 cut(s)	1784
BbsI	GAAGAC	2 cut(s)	618, 1767
Bbv12I	GWGCWC	3 cut(s)	157, 602, 1047
BbvCI	CCTCAGC	1 cut(s)	84
BccI	CCATC	9 cut(s)	117, 187, 344, 374, 539, 1157, 1495, 1592, 1663
BceAI	ACGGC	2 cut(s)	1213, 1279
BcgI	CGANNNNNNTGC	4 cut(s)	388, 422, 1650, 1684
BciT130I	CCWGG	3 cut(s)	661, 1190, 1848
BcoDI	GTCTC	5 cut(s)	713, 891, 1345, 1519, 2085
BcuI	ACTAGT	1 cut(s)	1472
BfaI	CTAG	4 cut(s)	503, 747, 1473, 2009
BfmI	CTRYAG	1 cut(s)	1251
BfoI	RGCGCY	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	94
BmcAI	AGTACT	2 cut(s)	493, 1396
Bme1390I	CCNGG	3 cut(s)	661, 1190, 1848
Bme18I	GGWCC	1 cut(s)	196
BmeT110I	CYCGRG	1 cut(s)	1355
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	7 cut(s)	396, 658, 796, 1115, 1662, 1852, 1902
BmrFI	CCNGG	3 cut(s)	661, 1190, 1848
BmsI	GCATC	7 cut(s)	396, 576, 772, 989, 1156, 1678, 2119
BpiI	GAAGAC	2 cut(s)	618, 1767
BpmI	CTGGAG	1 cut(s)	1411
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	906, 1937
Bsa29I	ATCGAT	2 cut(s)	983, 1216
BsaAI	YACGTR	3 cut(s)	315, 1089, 1784
BsaHI	GRCGYC	1 cut(s)	1185
BsaI	GGTCTC	1 cut(s)	1519
BsaJI	CCNNGG	6 cut(s)	69, 423, 790, 1189, 1846, 2073
BsaWI	WCCGGW	1 cut(s)	1100
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 498, 528
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 823, 939, 1535, 2079
Bse118I	RCCGGY	1 cut(s)	1100
Bse1I	ACTGG	2 cut(s)	1394, 1866
BseBI	CCWGG	3 cut(s)	661, 1190, 1848
BseCI	ATCGAT	2 cut(s)	983, 1216
BseDI	CCNNGG	6 cut(s)	69, 423, 790, 1189, 1846, 2073
BseGI	GGATG	6 cut(s)	198, 211, 298, 1020, 1171, 2134
BseLI	CCNNNNNNNGG	5 cut(s)	205, 823, 939, 1535, 2079
BseMII	CTCAG	3 cut(s)	68, 98, 2015
BseNI	ACTGG	2 cut(s)	1394, 1866
BseRI	GAGGAG	6 cut(s)	663, 666, 669, 985, 2090, 2114
BseYI	CCCAGC	2 cut(s)	137, 1077
BsgI	GTGCAG	1 cut(s)	1943
Bsh1236I	CGCG	6 cut(s)	529, 562, 940, 1029, 1426, 1496
BshFI	GGCC	1 cut(s)	1096
BshNI	GGYRCC	2 cut(s)	794, 1660
BshTI	ACCGGT	1 cut(s)	1100
BshVI	ATCGAT	2 cut(s)	983, 1216
BsiHKAI	GWGCWC	3 cut(s)	157, 602, 1047
BsiHKCI	CYCGRG	1 cut(s)	1355
BsiSI	CCGG	1 cut(s)	1101
BsiWI	CGTACG	1 cut(s)	315
BslFI	GGGAC	3 cut(s)	1060, 1461, 1639
BslI	CCNNNNNNNGG	5 cut(s)	205, 823, 939, 1535, 2079
BsmAI	GTCTC	5 cut(s)	713, 891, 1345, 1519, 2085
BsmBI	CGTCTC	1 cut(s)	891
BsmFI	GGGAC	3 cut(s)	1060, 1461, 1639
BsmI	GAATGC	2 cut(s)	226, 1252
BsnI	GGCC	1 cut(s)	1096
Bso31I	GGTCTC	1 cut(s)	1519
BsoBI	CYCGRG	1 cut(s)	1355
Bsp1286I	GDGCHC	5 cut(s)	109, 157, 256, 602, 1047
Bsp19I	CCATGG	1 cut(s)	790
BspANI	GGCC	1 cut(s)	1096
BspCNI	CTCAG	3 cut(s)	69, 97, 2014
BspDI	ATCGAT	2 cut(s)	983, 1216
BspFNI	CGCG	6 cut(s)	529, 562, 940, 1029, 1426, 1496
BspHI	TCATGA	4 cut(s)	868, 1312, 1738, 1870
BspLI	GGNNCC	7 cut(s)	396, 658, 796, 1115, 1662, 1852, 1902
BspMAI	CTGCAG	1 cut(s)	1255
BspMI	ACCTGC	1 cut(s)	88
BspQI	GCTCTTC	2 cut(s)	590, 750
BspT107I	GGYRCC	2 cut(s)	794, 1660
BspTNI	GGTCTC	1 cut(s)	1519
BsrFI	RCCGGY	1 cut(s)	1100
BsrI	ACTGG	2 cut(s)	1394, 1866
BssAI	RCCGGY	1 cut(s)	1100
BssECI	CCNNGG	6 cut(s)	69, 423, 790, 1189, 1846, 2073
BssNI	GRCGYC	1 cut(s)	1185
BssT1I	CCWWGG	2 cut(s)	423, 790
Bst2UI	CCWGG	3 cut(s)	661, 1190, 1848
Bst4CI	ACNGT	5 cut(s)	200, 468, 479, 1342, 1868
Bst6I	CTCTTC	5 cut(s)	590, 638, 750, 1517, 2099
BstACI	GRCGYC	1 cut(s)	1185
BstBAI	YACGTR	3 cut(s)	315, 1089, 1784
BstC8I	GCNNGC	2 cut(s)	1693, 1697
BstDEI	CTNAG	3 cut(s)	77, 84, 2001
BstDSI	CCRYGG	1 cut(s)	790
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	6 cut(s)	198, 211, 298, 1020, 1171, 2134
BstFNI	CGCG	6 cut(s)	529, 562, 940, 1029, 1426, 1496
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	3 cut(s)	263, 531, 666
BstMAI	GTCTC	5 cut(s)	713, 891, 1345, 1519, 2085
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 260, 1692
BstNI	CCWGG	3 cut(s)	661, 1190, 1848
BstNSI	RCATGY	3 cut(s)	421, 1699, 1703
BstSCI	CCNGG	3 cut(s)	659, 1188, 1846
BstSFI	CTRYAG	1 cut(s)	1251
BstSNI	TACGTA	1 cut(s)	315
BstUI	CGCG	6 cut(s)	529, 562, 940, 1029, 1426, 1496
BstV2I	GAAGAC	2 cut(s)	618, 1767
BstX2I	RGATCY	3 cut(s)	62, 394, 1113
BstXI	CCANNNNNNTGG	3 cut(s)	380, 1412, 1861
BstYI	RGATCY	3 cut(s)	62, 394, 1113
Bsu15I	ATCGAT	2 cut(s)	983, 1216
BsuRI	GGCC	1 cut(s)	1096
BsuTUI	ATCGAT	2 cut(s)	983, 1216
BtgI	CCRYGG	1 cut(s)	790
BtgZI	GCGATG	1 cut(s)	1701
BtsCI	GGATG	6 cut(s)	198, 211, 298, 1020, 1171, 2134
BtsI	GCAGTG	2 cut(s)	310, 412
BtsIMutI	CAGTG	4 cut(s)	310, 412, 737, 1859
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	1693, 1697
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	4 cut(s)	868, 1312, 1738, 1870
CfoI	GCGC	3 cut(s)	263, 531, 666
Cfr10I	RCCGGY	1 cut(s)	1100
Cfr13I	GGNCC	1 cut(s)	196
ClaI	ATCGAT	2 cut(s)	983, 1216
CseI	GACGC	2 cut(s)	2001, 2075
Csp6I	GTAC	4 cut(s)	316, 492, 1335, 1395
CspAI	ACCGGT	1 cut(s)	1100
CviQI	GTAC	4 cut(s)	316, 492, 1335, 1395
DdeI	CTNAG	3 cut(s)	77, 84, 2001
EaeI	YGGCCR	1 cut(s)	1094
Eam1104I	CTCTTC	5 cut(s)	590, 638, 750, 1517, 2099
EarI	CTCTTC	5 cut(s)	590, 638, 750, 1517, 2099
EciI	GGCGGA	1 cut(s)	2170
Ecl136II	GAGCTC	1 cut(s)	155
Eco105I	TACGTA	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	423, 790
Eco24I	GRGCYC	3 cut(s)	109, 157, 256
Eco31I	GGTCTC	1 cut(s)	1519
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	2 cut(s)	1541, 2144
Eco72I	CACGTG	1 cut(s)	1784
Eco88I	CYCGRG	1 cut(s)	1355
EcoICRI	GAGCTC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoRII	CCWGG	3 cut(s)	659, 1188, 1846
EcoT14I	CCWWGG	2 cut(s)	423, 790
EcoT22I	ATGCAT	3 cut(s)	289, 982, 1701
EcoT38I	GRGCYC	3 cut(s)	109, 157, 256
ErhI	CCWWGG	2 cut(s)	423, 790
Esp3I	CGTCTC	1 cut(s)	891
FaqI	GGGAC	3 cut(s)	1060, 1461, 1639
FauI	CCCGC	4 cut(s)	933, 1022, 1558, 1901
FokI	GGATG	6 cut(s)	198, 205, 305, 1007, 1178, 2141
FriOI	GRGCYC	3 cut(s)	109, 157, 256
FspBI	CTAG	4 cut(s)	503, 747, 1473, 2009
GlaI	GCGC	3 cut(s)	262, 530, 665
GsaI	CCCAGC	2 cut(s)	141, 1081
GsuI	CTGGAG	1 cut(s)	1411
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	1096
HapII	CCGG	1 cut(s)	1101
HgaI	GACGC	2 cut(s)	2001, 2075
HhaI	GCGC	3 cut(s)	263, 531, 666
Hin1I	GRCGYC	1 cut(s)	1185
Hin6I	GCGC	3 cut(s)	261, 529, 664
HinP1I	GCGC	3 cut(s)	261, 529, 664
HindIII	AAGCTT	1 cut(s)	1575
HinfI	GANTC	8 cut(s)	79, 985, 1213, 1353, 1451, 1544, 1602, 1763
HpaII	CCGG	1 cut(s)	1101
HphI	GGTGA	8 cut(s)	26, 46, 112, 448, 1138, 1539, 1582, 1827
Hpy166II	GTNNAC	1 cut(s)	1835
Hpy8I	GTNNAC	1 cut(s)	1835
Hpy99I	CGWCG	4 cut(s)	833, 1187, 1431, 2091
HpyAV	CCTTC	7 cut(s)	5, 127, 143, 530, 1034, 1677, 2119
HpyCH4III	ACNGT	5 cut(s)	200, 468, 479, 1342, 1868
HpyCH4IV	ACGT	8 cut(s)	314, 318, 587, 1088, 1185, 1429, 1508, 1783
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 260, 1692
HpyF3I	CTNAG	3 cut(s)	77, 84, 2001
HpySE526I	ACGT	8 cut(s)	314, 318, 587, 1088, 1185, 1429, 1508, 1783
Hsp92I	GRCGYC	1 cut(s)	1185
HspAI	GCGC	3 cut(s)	261, 529, 664
LguI	GCTCTTC	2 cut(s)	590, 750
LweI	GCATC	7 cut(s)	396, 576, 772, 989, 1156, 1678, 2119
MaeI	CTAG	4 cut(s)	503, 747, 1473, 2009
MaeII	ACGT	8 cut(s)	314, 318, 587, 1088, 1185, 1429, 1508, 1783
MaeIII	GTNAC	7 cut(s)	3, 242, 1084, 1144, 1259, 1702, 1989
MfeI	CAATTG	2 cut(s)	1928, 2150
MflI	RGATCY	3 cut(s)	62, 394, 1113
MhlI	GDGCHC	5 cut(s)	109, 157, 256, 602, 1047
MlyI	GAGTC	5 cut(s)	88, 1347, 1445, 1611, 1757
MmeI	TCCRAC	2 cut(s)	822, 957
Mph1103I	ATGCAT	3 cut(s)	289, 982, 1701
MseI	TTAA	7 cut(s)	321, 483, 776, 783, 1224, 1370, 1446
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	1101
MspR9I	CCNGG	3 cut(s)	661, 1190, 1848
MunI	CAATTG	2 cut(s)	1928, 2150
Mva1269I	GAATGC	2 cut(s)	226, 1252
MvaI	CCWGG	3 cut(s)	661, 1190, 1848
MvnI	CGCG	6 cut(s)	529, 562, 940, 1029, 1426, 1496
MwoI	GCNNNNNNNGC	3 cut(s)	94, 260, 1692
NcoI	CCATGG	1 cut(s)	790
NlaIV	GGNNCC	7 cut(s)	396, 658, 796, 1115, 1662, 1852, 1902
NmeAIII	GCCGAG	2 cut(s)	237, 295
NmuCI	GTSAC	6 cut(s)	3, 242, 1084, 1144, 1259, 1989
NsiI	ATGCAT	3 cut(s)	289, 982, 1701
NspI	RCATGY	3 cut(s)	421, 1699, 1703
PaeI	GCATGC	1 cut(s)	1699
PaeR7I	CTCGAG	1 cut(s)	1355
PagI	TCATGA	4 cut(s)	868, 1312, 1738, 1870
PaqCI	CACCTGC	1 cut(s)	88
PciSI	GCTCTTC	2 cut(s)	590, 750
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	2 cut(s)	226, 1252
PfeI	GAWTC	3 cut(s)	985, 1213, 1544
Pfl23II	CGTACG	1 cut(s)	315
PinAI	ACCGGT	1 cut(s)	1100
PleI	GAGTC	5 cut(s)	87, 1347, 1445, 1610, 1757
PmaCI	CACGTG	1 cut(s)	1784
PmlI	CACGTG	1 cut(s)	1784
PpsI	GAGTC	5 cut(s)	87, 1347, 1445, 1610, 1757
Ppu21I	YACGTR	3 cut(s)	315, 1089, 1784
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	659, 1188, 1846
PspCI	CACGTG	1 cut(s)	1784
PspFI	CCCAGC	2 cut(s)	137, 1077
PspGI	CCWGG	3 cut(s)	659, 1188, 1846
PspLI	CGTACG	1 cut(s)	315
PspN4I	GGNNCC	7 cut(s)	396, 658, 796, 1115, 1662, 1852, 1902
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	1255
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	3 cut(s)	62, 394, 1113
RsaI	GTAC	4 cut(s)	317, 493, 1336, 1396
RsaNI	GTAC	4 cut(s)	316, 492, 1335, 1395
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	157
SapI	GCTCTTC	2 cut(s)	590, 750
SaqAI	TTAA	7 cut(s)	321, 483, 776, 783, 1224, 1370, 1446
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	2 cut(s)	493, 1396
SchI	GAGTC	5 cut(s)	88, 1347, 1445, 1611, 1757
ScrFI	CCNGG	3 cut(s)	661, 1190, 1848
SduI	GDGCHC	5 cut(s)	109, 157, 256, 602, 1047
SfaNI	GCATC	7 cut(s)	396, 576, 772, 989, 1156, 1678, 2119
SfcI	CTRYAG	1 cut(s)	1251
Sfr274I	CTCGAG	1 cut(s)	1355
SinI	GGWCC	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	1355
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	3 cut(s)	921, 1355, 1952
SmoI	CTYRAG	3 cut(s)	921, 1355, 1952
SnaBI	TACGTA	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	1472
SphI	GCATGC	1 cut(s)	1699
SspMI	CTAG	4 cut(s)	503, 747, 1473, 2009
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	659, 1188, 1846
StyI	CCWWGG	2 cut(s)	423, 790
TaaI	ACNGT	5 cut(s)	200, 468, 479, 1342, 1868
TaiI	ACGT	8 cut(s)	317, 321, 590, 1091, 1188, 1432, 1511, 1786
TatI	WGTACW	2 cut(s)	491, 1394
TauI	GCSGC	3 cut(s)	91, 97, 1000
TfiI	GAWTC	3 cut(s)	985, 1213, 1544
Tru1I	TTAA	7 cut(s)	321, 483, 776, 783, 1224, 1370, 1446
Tru9I	TTAA	7 cut(s)	321, 483, 776, 783, 1224, 1370, 1446
TscAI	CASTG	4 cut(s)	310, 419, 737, 1866
TseFI	GTSAC	6 cut(s)	3, 242, 1084, 1144, 1259, 1989
Tsp45I	GTSAC	6 cut(s)	3, 242, 1084, 1144, 1259, 1989
TspDTI	ATGAA	5 cut(s)	162, 200, 1665, 2051, 2058
TspGWI	ACGGA	2 cut(s)	1785, 1826
TspRI	CASTG	4 cut(s)	310, 419, 737, 1866
VpaK11BI	GGWCC	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	821
XapI	RAATTY	1 cut(s)	1959
XceI	RCATGY	3 cut(s)	421, 1699, 1703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2149
XhoI	CTCGAG	1 cut(s)	1355
XspI	CTAG	4 cut(s)	503, 747, 1473, 2009
ZraI	GACGTC	1 cut(s)	1186
ZrmI	AGTACT	2 cut(s)	493, 1396
Zsp2I	ATGCAT	3 cut(s)	289, 982, 1701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.