Exhibits ATPase activity. Binds DNA RNA in a non- specific manner and exhibits endonuclease activity. Probably involved in DNA repair. Involved in RNA-directed DNA methylation (RdDM) as a component of the RdDM machinery and required for gene silencing. May also be involved in the regulation of chromatin architecture to maintain gene silencing. Together with
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24970 AT5G50780 AT5G50780 AT5G50780 |
| fragaria_vesca | FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820 |
| malus_domestica | MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1 |
| prunus_persica | Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 |
| pyrus_communis | pycom06g12840 pycom14g12650 pycom17g06890 |
| rosa_chinensis | RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451 |
| rosa_laevigata | RLG00000004610 RLG00000021104 |
| rosa_multiflora | Rmu_sc0004188.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00091130 Rroxscaffold_3G00265430 |
| rosa_rugosa | Rorug02G0471200 Rorug06G0498000 Rorug06G0498100 |
| rosa_samantha | Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900 |
| rosa_wichuraiana | Rw2G044460 Rw7G008890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1383 |
| AarI | CACCTGC | 1 cut(s) | 431 |
| Acc36I | ACCTGC | 2 cut(s) | 431, 2250 |
| AccB1I | GGYRCC | 1 cut(s) | 355 |
| AccI | GTMKAC | 3 cut(s) | 177, 582, 1657 |
| AccII | CGCG | 3 cut(s) | 220, 2152, 2370 |
| AccIII | TCCGGA | 1 cut(s) | 268 |
| AclI | AACGTT | 1 cut(s) | 345 |
| AclWI | GGATC | 7 cut(s) | 123, 136, 583, 1100, 1781, 1804, 1936 |
| AcoI | YGGCCR | 1 cut(s) | 1337 |
| AcsI | RAATTY | 3 cut(s) | 1392, 1781, 1889 |
| AcuI | CTGAAG | 3 cut(s) | 1014, 1779, 1866 |
| AcyI | GRCGYC | 2 cut(s) | 356, 2411 |
| AfaI | GTAC | 6 cut(s) | 465, 748, 879, 1199, 1370, 2155 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 69, 1809, 2041, 2144 |
| AflIII | ACRYGT | 1 cut(s) | 1411 |
| AgeI | ACCGGT | 1 cut(s) | 185 |
| AgsI | TTSAA | 7 cut(s) | 170, 739, 974, 1489, 1894, 2276, 2288 |
| AhlI | ACTAGT | 2 cut(s) | 494, 743 |
| AjiI | CACGTC | 2 cut(s) | 1655, 2249 |
| AjnI | CCWGG | 1 cut(s) | 2110 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1864, 1896 |
| Alw21I | GWGCWC | 2 cut(s) | 812, 857 |
| Alw26I | GTCTC | 4 cut(s) | 244, 513, 681, 2355 |
| AlwI | GGATC | 7 cut(s) | 123, 136, 583, 1100, 1781, 1804, 1936 |
| Ama87I | CYCGRG | 2 cut(s) | 1646, 2448 |
| Aor13HI | TCCGGA | 1 cut(s) | 268 |
| AoxI | GGCC | 2 cut(s) | 826, 1337 |
| ApeKI | GCWGC | 4 cut(s) | 1399, 1850, 1877, 2107 |
| ApoI | RAATTY | 3 cut(s) | 1392, 1781, 1889 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1810, 1842 |
| AsiGI | ACCGGT | 1 cut(s) | 185 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 226, 904, 1002 |
| AspLEI | GCGC | 4 cut(s) | 220, 358, 1364, 1626 |
| AspS9I | GGNCC | 3 cut(s) | 1818, 2147, 2239 |
| AsuHPI | GGTGA | 6 cut(s) | 203, 231, 410, 434, 1767, 2076 |
| AvaI | CYCGRG | 2 cut(s) | 1646, 2448 |
| AvaII | GGWCC | 3 cut(s) | 1818, 2147, 2239 |
| BamHI | GGATCC | 1 cut(s) | 128 |
| BanI | GGYRCC | 1 cut(s) | 355 |
| BanII | GRGCYC | 2 cut(s) | 812, 2035 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 273, 305 |
| BbsI | GAAGAC | 2 cut(s) | 924, 1767 |
| Bbv12I | GWGCWC | 2 cut(s) | 812, 857 |
| BbvCI | CCTCAGC | 1 cut(s) | 2280 |
| BbvI | GCAGC | 4 cut(s) | 1386, 1837, 1889, 2094 |
| BccI | CCATC | 5 cut(s) | 599, 794, 1349, 1547, 2432 |
| BciT130I | CCWGG | 1 cut(s) | 2112 |
| BciVI | GTATCC | 1 cut(s) | 1735 |
| BclI | TGATCA | 1 cut(s) | 451 |
| BcoDI | GTCTC | 4 cut(s) | 244, 513, 681, 2355 |
| BcuI | ACTAGT | 2 cut(s) | 494, 743 |
| BfaI | CTAG | 9 cut(s) | 69, 254, 495, 680, 744, 1085, 1182, 1641, 2402 |
| BfmI | CTRYAG | 2 cut(s) | 231, 438 |
| BfoI | RGCGCY | 1 cut(s) | 359 |
| BfuAI | ACCTGC | 2 cut(s) | 431, 2250 |
| BfuI | GTATCC | 1 cut(s) | 1735 |
| BglII | AGATCT | 1 cut(s) | 1685 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BmcAI | AGTACT | 1 cut(s) | 1370 |
| Bme1390I | CCNGG | 1 cut(s) | 2112 |
| Bme18I | GGWCC | 3 cut(s) | 1818, 2147, 2239 |
| BmeT110I | CYCGRG | 2 cut(s) | 1646, 2448 |
| BmgBI | CACGTC | 2 cut(s) | 1655, 2249 |
| BmgT120I | GGNCC | 3 cut(s) | 1818, 2147, 2239 |
| BmiI | GGNNCC | 4 cut(s) | 6, 130, 357, 2032 |
| BmrFI | CCNGG | 1 cut(s) | 2112 |
| BmsI | GCATC | 5 cut(s) | 651, 1297, 1302, 1349, 1447 |
| BpiI | GAAGAC | 2 cut(s) | 924, 1767 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2184, 2216 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1737, 2280 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 1 cut(s) | 2010 |
| Bsa29I | ATCGAT | 1 cut(s) | 2340 |
| BsaHI | GRCGYC | 2 cut(s) | 356, 2411 |
| BsaI | GGTCTC | 1 cut(s) | 513 |
| BsaJI | CCNNGG | 4 cut(s) | 790, 1270, 1856, 2111 |
| BsaWI | WCCGGW | 3 cut(s) | 28, 185, 268 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 753, 783, 1837, 1867 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 69, 1809, 2041, 2144 |
| Bse118I | RCCGGY | 3 cut(s) | 185, 241, 1335 |
| BseAI | TCCGGA | 1 cut(s) | 268 |
| BseBI | CCWGG | 1 cut(s) | 2112 |
| BseCI | ATCGAT | 1 cut(s) | 2340 |
| BseDI | CCNNGG | 4 cut(s) | 790, 1270, 1856, 2111 |
| BseGI | GGATG | 7 cut(s) | 277, 466, 651, 1147, 1364, 1462, 1480 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 69, 1809, 2041, 2144 |
| BseMII | CTCAG | 8 cut(s) | 153, 516, 1225, 2094, 2150, 2153, 2271, 2404 |
| BseRI | GAGGAG | 1 cut(s) | 2420 |
| BseXI | GCAGC | 4 cut(s) | 1386, 1837, 1889, 2094 |
| Bsh1236I | CGCG | 3 cut(s) | 220, 2152, 2370 |
| BshFI | GGCC | 2 cut(s) | 828, 1339 |
| BshNI | GGYRCC | 1 cut(s) | 355 |
| BshTI | ACCGGT | 1 cut(s) | 185 |
| BshVI | ATCGAT | 1 cut(s) | 2340 |
| BsiHKAI | GWGCWC | 2 cut(s) | 812, 857 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1646, 2448 |
| BsiSI | CCGG | 6 cut(s) | 29, 186, 242, 269, 329, 1336 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 69, 1809, 2041, 2144 |
| BsmAI | GTCTC | 4 cut(s) | 244, 513, 681, 2355 |
| BsmI | GAATGC | 3 cut(s) | 481, 1086, 1543 |
| BsnI | GGCC | 2 cut(s) | 828, 1339 |
| Bso31I | GGTCTC | 1 cut(s) | 513 |
| BsoBI | CYCGRG | 2 cut(s) | 1646, 2448 |
| Bsp1286I | GDGCHC | 3 cut(s) | 812, 857, 2035 |
| Bsp13I | TCCGGA | 1 cut(s) | 268 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| BspANI | GGCC | 2 cut(s) | 828, 1339 |
| BspCNI | CTCAG | 8 cut(s) | 154, 517, 1224, 2095, 2151, 2152, 2272, 2403 |
| BspDI | ATCGAT | 1 cut(s) | 2340 |
| BspEI | TCCGGA | 1 cut(s) | 268 |
| BspFNI | CGCG | 3 cut(s) | 220, 2152, 2370 |
| BspHI | TCATGA | 1 cut(s) | 1603 |
| BspLI | GGNNCC | 4 cut(s) | 6, 130, 357, 2032 |
| BspMAI | CTGCAG | 1 cut(s) | 442 |
| BspMI | ACCTGC | 2 cut(s) | 431, 2250 |
| BspPI | GGATC | 7 cut(s) | 123, 136, 583, 1100, 1781, 1804, 1936 |
| BspQI | GCTCTTC | 1 cut(s) | 330 |
| BspT107I | GGYRCC | 1 cut(s) | 355 |
| BspTNI | GGTCTC | 1 cut(s) | 513 |
| BsrFI | RCCGGY | 3 cut(s) | 185, 241, 1335 |
| BssAI | RCCGGY | 3 cut(s) | 185, 241, 1335 |
| BssECI | CCNNGG | 4 cut(s) | 790, 1270, 1856, 2111 |
| BssNI | GRCGYC | 2 cut(s) | 356, 2411 |
| BssT1I | CCWWGG | 1 cut(s) | 790 |
| Bst2UI | CCWGG | 1 cut(s) | 2112 |
| Bst4CI | ACNGT | 4 cut(s) | 967, 1422, 1633, 1822 |
| Bst6I | CTCTTC | 6 cut(s) | 206, 242, 276, 330, 895, 2111 |
| BstACI | GRCGYC | 2 cut(s) | 356, 2411 |
| BstC8I | GCNNGC | 2 cut(s) | 1599, 2328 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1807 |
| BstF5I | GGATG | 7 cut(s) | 277, 466, 651, 1147, 1364, 1462, 1480 |
| BstFNI | CGCG | 3 cut(s) | 220, 2152, 2370 |
| BstH2I | RGCGCY | 1 cut(s) | 359 |
| BstHHI | GCGC | 4 cut(s) | 220, 358, 1364, 1626 |
| BstMAI | GTCTC | 4 cut(s) | 244, 513, 681, 2355 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 242, 320, 329, 1405 |
| BstNI | CCWGG | 1 cut(s) | 2112 |
| BstNSI | RCATGY | 1 cut(s) | 1415 |
| BstSCI | CCNGG | 1 cut(s) | 2110 |
| BstSFI | CTRYAG | 2 cut(s) | 231, 438 |
| BstUI | CGCG | 3 cut(s) | 220, 2152, 2370 |
| BstV1I | GCAGC | 4 cut(s) | 1386, 1837, 1889, 2094 |
| BstV2I | GAAGAC | 2 cut(s) | 924, 1767 |
| BstX2I | RGATCY | 4 cut(s) | 128, 1685, 1796, 1928 |
| BstYI | RGATCY | 4 cut(s) | 128, 1685, 1796, 1928 |
| Bsu15I | ATCGAT | 1 cut(s) | 2340 |
| BsuI | GTATCC | 1 cut(s) | 1735 |
| BsuRI | GGCC | 2 cut(s) | 828, 1339 |
| BsuTUI | ATCGAT | 1 cut(s) | 2340 |
| BtrI | CACGTC | 2 cut(s) | 1655, 2249 |
| BtsCI | GGATG | 7 cut(s) | 277, 466, 651, 1147, 1364, 1462, 1480 |
| BtsIMutI | CAGTG | 2 cut(s) | 1101, 1755 |
| BveI | ACCTGC | 2 cut(s) | 431, 2250 |
| Cac8I | GCNNGC | 2 cut(s) | 1599, 2328 |
| CciI | TCATGA | 1 cut(s) | 1603 |
| CfoI | GCGC | 4 cut(s) | 220, 358, 1364, 1626 |
| Cfr10I | RCCGGY | 3 cut(s) | 185, 241, 1335 |
| Cfr13I | GGNCC | 3 cut(s) | 1818, 2147, 2239 |
| ClaI | ATCGAT | 1 cut(s) | 2340 |
| CseI | GACGC | 3 cut(s) | 823, 2376, 2400 |
| Csp6I | GTAC | 6 cut(s) | 464, 747, 878, 1198, 1369, 2154 |
| CspAI | ACCGGT | 1 cut(s) | 185 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 622, 657 |
| CviQI | GTAC | 6 cut(s) | 464, 747, 878, 1198, 1369, 2154 |
| DinI | GGCGCC | 1 cut(s) | 357 |
| DraI | TTTAAA | 1 cut(s) | 1837 |
| EaeI | YGGCCR | 1 cut(s) | 1337 |
| Eam1104I | CTCTTC | 6 cut(s) | 206, 242, 276, 330, 895, 2111 |
| EarI | CTCTTC | 6 cut(s) | 206, 242, 276, 330, 895, 2111 |
| EciI | GGCGGA | 2 cut(s) | 75, 1932 |
| Ecl136II | GAGCTC | 1 cut(s) | 810 |
| Eco130I | CCWWGG | 1 cut(s) | 790 |
| Eco24I | GRGCYC | 2 cut(s) | 812, 2035 |
| Eco31I | GGTCTC | 1 cut(s) | 513 |
| Eco32I | GATATC | 1 cut(s) | 1117 |
| Eco47I | GGWCC | 3 cut(s) | 1818, 2147, 2239 |
| Eco53kI | GAGCTC | 1 cut(s) | 810 |
| Eco57I | CTGAAG | 3 cut(s) | 1014, 1779, 1866 |
| Eco88I | CYCGRG | 2 cut(s) | 1646, 2448 |
| EcoICRI | GAGCTC | 1 cut(s) | 810 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1807 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2239 |
| EcoRII | CCWGG | 1 cut(s) | 2110 |
| EcoRV | GATATC | 1 cut(s) | 1117 |
| EcoT14I | CCWWGG | 1 cut(s) | 790 |
| EcoT38I | GRGCYC | 2 cut(s) | 812, 2035 |
| EgeI | GGCGCC | 1 cut(s) | 357 |
| EheI | GGCGCC | 1 cut(s) | 357 |
| ErhI | CCWWGG | 1 cut(s) | 790 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 605, 637, 987, 1019, 990, 1022 |
| FauI | CCCGC | 1 cut(s) | 70 |
| FauNDI | CATATG | 1 cut(s) | 1665 |
| FbaI | TGATCA | 1 cut(s) | 451 |
| FblI | GTMKAC | 3 cut(s) | 177, 582, 1657 |
| FokI | GGATG | 7 cut(s) | 284, 453, 658, 1154, 1371, 1469, 1487 |
| FriOI | GRGCYC | 2 cut(s) | 812, 2035 |
| FspBI | CTAG | 9 cut(s) | 69, 254, 495, 680, 744, 1085, 1182, 1641, 2402 |
| GlaI | GCGC | 4 cut(s) | 219, 357, 1363, 1625 |
| HaeII | RGCGCY | 1 cut(s) | 359 |
| HaeIII | GGCC | 2 cut(s) | 828, 1339 |
| HapII | CCGG | 6 cut(s) | 29, 186, 242, 269, 329, 1336 |
| HgaI | GACGC | 3 cut(s) | 823, 2376, 2400 |
| HhaI | GCGC | 4 cut(s) | 220, 358, 1364, 1626 |
| Hin1I | GRCGYC | 2 cut(s) | 356, 2411 |
| Hin6I | GCGC | 4 cut(s) | 218, 356, 1362, 1624 |
| HinP1I | GCGC | 4 cut(s) | 218, 356, 1362, 1624 |
| HpaII | CCGG | 6 cut(s) | 29, 186, 242, 269, 329, 1336 |
| HphI | GGTGA | 6 cut(s) | 203, 231, 410, 434, 1767, 2076 |
| Hpy166II | GTNNAC | 6 cut(s) | 178, 583, 701, 1495, 1658, 1982 |
| Hpy188I | TCNGA | 8 cut(s) | 133, 910, 1271, 1857, 1885, 1969, 2125, 2393 |
| Hpy8I | GTNNAC | 6 cut(s) | 178, 583, 701, 1495, 1658, 1982 |
| Hpy99I | CGWCG | 4 cut(s) | 155, 817, 2250, 2416 |
| HpyAV | CCTTC | 8 cut(s) | 119, 369, 401, 839, 1070, 1447, 1666, 1836 |
| HpyCH4III | ACNGT | 4 cut(s) | 967, 1422, 1633, 1822 |
| HpyCH4IV | ACGT | 5 cut(s) | 345, 784, 1196, 1654, 2248 |
| HpyCH4V | TGCA | 9 cut(s) | 440, 481, 491, 707, 1315, 1460, 1480, 1669, 2233 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 242, 320, 329, 1405 |
| HpySE526I | ACGT | 5 cut(s) | 345, 784, 1196, 1654, 2248 |
| Hsp92I | GRCGYC | 2 cut(s) | 356, 2411 |
| HspAI | GCGC | 4 cut(s) | 218, 356, 1362, 1624 |
| KasI | GGCGCC | 1 cut(s) | 355 |
| Kpn2I | TCCGGA | 1 cut(s) | 268 |
| Ksp22I | TGATCA | 1 cut(s) | 451 |
| LguI | GCTCTTC | 1 cut(s) | 330 |
| LmnI | GCTCC | 6 cut(s) | 4, 515, 563, 761, 1858, 2030 |
| Lsp1109I | GCAGC | 4 cut(s) | 1386, 1837, 1889, 2094 |
| LweI | GCATC | 5 cut(s) | 651, 1297, 1302, 1349, 1447 |
| MaeI | CTAG | 9 cut(s) | 69, 254, 495, 680, 744, 1085, 1182, 1641, 2402 |
| MaeII | ACGT | 5 cut(s) | 345, 784, 1196, 1654, 2248 |
| MfeI | CAATTG | 1 cut(s) | 2165 |
| MflI | RGATCY | 4 cut(s) | 128, 1685, 1796, 1928 |
| MhlI | GDGCHC | 3 cut(s) | 812, 857, 2035 |
| Mly113I | GGCGCC | 1 cut(s) | 356 |
| MlyI | GAGTC | 2 cut(s) | 1638, 2170 |
| MmeI | TCCRAC | 2 cut(s) | 1868, 1895 |
| MroI | TCCGGA | 1 cut(s) | 268 |
| MroXI | GAANNNNTTC | 3 cut(s) | 226, 904, 1002 |
| MslI | CAYNNNNRTG | 2 cut(s) | 486, 1473 |
| MspI | CCGG | 6 cut(s) | 29, 186, 242, 269, 329, 1336 |
| MspR9I | CCNGG | 1 cut(s) | 2112 |
| MunI | CAATTG | 1 cut(s) | 2165 |
| Mva1269I | GAATGC | 3 cut(s) | 481, 1086, 1543 |
| MvaI | CCWGG | 1 cut(s) | 2112 |
| MvnI | CGCG | 3 cut(s) | 220, 2152, 2370 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 242, 320, 329, 1405 |
| NarI | GGCGCC | 1 cut(s) | 356 |
| NdeI | CATATG | 1 cut(s) | 1665 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 130, 357, 2032 |
| NmuCI | GTSAC | 4 cut(s) | 497, 1435, 1694, 1773 |
| NspI | RCATGY | 1 cut(s) | 1415 |
| PaeR7I | CTCGAG | 2 cut(s) | 1646, 2448 |
| PagI | TCATGA | 1 cut(s) | 1603 |
| PaqCI | CACCTGC | 1 cut(s) | 431 |
| PciI | ACATGT | 1 cut(s) | 1411 |
| PciSI | GCTCTTC | 1 cut(s) | 330 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 129 |
| PctI | GAATGC | 3 cut(s) | 481, 1086, 1543 |
| PdmI | GAANNNNTTC | 3 cut(s) | 226, 904, 1002 |
| PinAI | ACCGGT | 1 cut(s) | 185 |
| PleI | GAGTC | 2 cut(s) | 1638, 2169 |
| PluTI | GGCGCC | 1 cut(s) | 359 |
| PpsI | GAGTC | 2 cut(s) | 1638, 2169 |
| PpuMI | RGGWCCY | 1 cut(s) | 2239 |
| PscI | ACATGT | 1 cut(s) | 1411 |
| PsiI | TTATAA | 1 cut(s) | 1383 |
| Psp124BI | GAGCTC | 1 cut(s) | 812 |
| Psp1406I | AACGTT | 1 cut(s) | 345 |
| Psp5II | RGGWCCY | 1 cut(s) | 2239 |
| Psp6I | CCWGG | 1 cut(s) | 2110 |
| PspGI | CCWGG | 1 cut(s) | 2110 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 130, 357, 2032 |
| PspPI | GGNCC | 3 cut(s) | 1818, 2147, 2239 |
| PspPPI | RGGWCCY | 1 cut(s) | 2239 |
| PspXI | VCTCGAGB | 2 cut(s) | 1646, 2448 |
| PstI | CTGCAG | 1 cut(s) | 442 |
| PsuI | RGATCY | 4 cut(s) | 128, 1685, 1796, 1928 |
| RsaI | GTAC | 6 cut(s) | 465, 748, 879, 1199, 1370, 2155 |
| RsaNI | GTAC | 6 cut(s) | 464, 747, 878, 1198, 1369, 2154 |
| RseI | CAYNNNNRTG | 2 cut(s) | 486, 1473 |
| SacI | GAGCTC | 1 cut(s) | 812 |
| SapI | GCTCTTC | 1 cut(s) | 330 |
| Sau96I | GGNCC | 3 cut(s) | 1818, 2147, 2239 |
| ScaI | AGTACT | 1 cut(s) | 1370 |
| SchI | GAGTC | 2 cut(s) | 1638, 2170 |
| ScrFI | CCNGG | 1 cut(s) | 2112 |
| SduI | GDGCHC | 3 cut(s) | 812, 857, 2035 |
| SfaNI | GCATC | 5 cut(s) | 651, 1297, 1302, 1349, 1447 |
| SfcI | CTRYAG | 2 cut(s) | 231, 438 |
| SfoI | GGCGCC | 1 cut(s) | 357 |
| Sfr274I | CTCGAG | 2 cut(s) | 1646, 2448 |
| SgrAI | CRCCGGYG | 1 cut(s) | 241 |
| SinI | GGWCC | 3 cut(s) | 1818, 2147, 2239 |
| SlaI | CTCGAG | 2 cut(s) | 1646, 2448 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 486, 1473 |
| SmlI | CTYRAG | 3 cut(s) | 1646, 2025, 2448 |
| SmoI | CTYRAG | 3 cut(s) | 1646, 2025, 2448 |
| SpeI | ACTAGT | 2 cut(s) | 494, 743 |
| SspDI | GGCGCC | 1 cut(s) | 355 |
| SspI | AATATT | 1 cut(s) | 1153 |
| SspMI | CTAG | 9 cut(s) | 69, 254, 495, 680, 744, 1085, 1182, 1641, 2402 |
| SstI | GAGCTC | 1 cut(s) | 812 |
| StyD4I | CCNGG | 1 cut(s) | 2110 |
| StyI | CCWWGG | 1 cut(s) | 790 |
| TaaI | ACNGT | 4 cut(s) | 967, 1422, 1633, 1822 |
| TaiI | ACGT | 5 cut(s) | 348, 787, 1199, 1657, 2251 |
| TaqII | GACCGA | 2 cut(s) | 195, 1334 |
| TatI | WGTACW | 3 cut(s) | 463, 746, 1368 |
| TauI | GCSGC | 6 cut(s) | 68, 91, 356, 667, 1352, 1544 |
| TscAI | CASTG | 2 cut(s) | 1108, 1762 |
| TseFI | GTSAC | 4 cut(s) | 497, 1435, 1694, 1773 |
| TseI | GCWGC | 4 cut(s) | 1399, 1850, 1877, 2107 |
| Tsp45I | GTSAC | 4 cut(s) | 497, 1435, 1694, 1773 |
| TspDTI | ATGAA | 5 cut(s) | 420, 662, 909, 1040, 1652 |
| TspGWI | ACGGA | 3 cut(s) | 88, 651, 1247 |
| TspRI | CASTG | 2 cut(s) | 1108, 1762 |
| VpaK11BI | GGWCC | 3 cut(s) | 1818, 2147, 2239 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1807 |
| XapI | RAATTY | 3 cut(s) | 1392, 1781, 1889 |
| XbaI | TCTAGA | 2 cut(s) | 1181, 1640 |
| XceI | RCATGY | 1 cut(s) | 1415 |
| XhoI | CTCGAG | 2 cut(s) | 1646, 2448 |
| XmiI | GTMKAC | 3 cut(s) | 177, 582, 1657 |
| XmnI | GAANNNNTTC | 3 cut(s) | 226, 904, 1002 |
| XspI | CTAG | 9 cut(s) | 69, 254, 495, 680, 744, 1085, 1182, 1641, 2402 |
| ZrmI | AGTACT | 1 cut(s) | 1370 |