Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Forward (+)

61425214 .. 61427683

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0498100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCCGCAAAGAATTGCAGAAATTTGTAGGATTGCTACACAGCACAGCCCAGTGGCCGTGGTATTCAAATACACGAGATATGGGTTCGGCTTGTTCACAGTGGGGGAAAGGTTGAGGCACGACGCAGAGGAACTTTCAGGCGCCGGTGGAAGCAAGGCTGTGGTTAGGCCGGTTCATAAAGAATTTGACATGCTTTTGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

68

Amino Acids

7.69

Weight (kDa)

9.51

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	21, 182
AcyI	GRCGYC	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	67
AoxI	GGCC	2 cut(s)	54, 167
ApoI	RAATTY	2 cut(s)	21, 182
AspLEI	GCGC	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	73
BceAI	ACGGC	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	57
Bse118I	RCCGGY	2 cut(s)	143, 169
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	56, 169
BshNI	GGYRCC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	144, 170
BsnI	GGCC	2 cut(s)	56, 169
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	56, 169
BspLI	GGNNCC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	140
BsrFI	RCCGGY	2 cut(s)	143, 169
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	2 cut(s)	143, 169
BssECI	CCNNGG	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	141
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	56, 169
BtgI	CCRYGG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 105
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	2 cut(s)	143, 169
CseI	GACGC	1 cut(s)	131
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	5 cut(s)	48, 56, 90, 158, 169
CviKI_1	RGCY	5 cut(s)	48, 56, 90, 158, 169
DinI	GGCGCC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
FaeI	CATG	1 cut(s)	193
FaiI	YATR	3 cut(s)	81, 177, 191
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	5
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	56, 169
HapII	CCGG	2 cut(s)	144, 170
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	144, 170
Hpy166II	GTNNAC	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	63, 123, 157, 183
MluCI	AATT	3 cut(s)	12, 21, 182
Mly113I	GGCGCC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	108, 121
MspI	CCGG	2 cut(s)	144, 170
NarI	GGCGCC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	6
PluTI	GGCGCC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	5
SetI	ASST	1 cut(s)	113
SfoI	GGCGCC	1 cut(s)	142
SgrAI	CRCCGGYG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	12, 21, 182
SsiI	CCGC	1 cut(s)	5
SspDI	GGCGCC	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	3 cut(s)	12, 21, 182
TauI	GCSGC	1 cut(s)	7
TscAI	CASTG	2 cut(s)	57, 105
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	57, 105
XapI	RAATTY	2 cut(s)	21, 182
XceI	RCATGY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.