Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

8021198 .. 8028022

Gene Structure 6825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG102800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGAGGCGGTGGTGAAGCAGGAGCTTCTGAACGACGTGCCGCACTCTTCGCCGAGGCGGAAGGGCGCCATTTCGGCGGTGCCGCCGGACTCGGTAATCGCGCTTGATACGAGCAGTAGTGACTCGGAGTCGGAGTCGGAGTCGGACTCGGAGGAGGAGAACGGGAAGGACGACGCCGTTTTGGGACGCGTGCTGAAGAAGAGGAGGCTGAACGAGATGGGAGTGATTATGCCGGTCTTGGATCCTCTGCCTTCGCCGGAGGAGGAGGAGGAGGAGTTGCCGCGGATGTTGCCGGCGCCGGCGGTGTCCGGGGCCGGGAGGGGGATGTTGAGTGTTAATTACTGCAAGCAGTTTTGGAAGGCTGGGGAGTTTGAGTTAGTGCCTTGTGGCGATGCGGATTCTTCTGCTGGCGGGATGGACCATGTGAGGATTCATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGCTTTCGCAGAGCTACTAGACAATGCAATAGATGAGGTTTGCACTGGTGCTACTTATGTTAAGGTAGATATGCTTGAAAATCAGAAAGACGGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATCGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCTCTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGCTTGATTATGAAAGACAAGGAGCAGATTGGTACAGGATCAGACGATCCTCTCCCAGCGATTGGAACAAAAATTTGGAAACGATACTTCAGTGGTCACCATTTTCTAGAGAAGAAGACTTGGATCACCAGTTCTATCTGATGAAAAACCAAGGCACTCGAGTAATTATTTACAATCTTTGGGAGGATGATGAAGGACAGTTGGAGCTTGATTTTGATGCTGATCCACATGATATTCAAATCAGAGGTGTCAATCGCGATGAAAAGAATATACAAATGGCTAAACAGTTTCCTAATTCTCGTCATTTTTTGACCTACCGGCACTCATTGAGGAGTTATGCAGCAATTCTATATTTGCGGCTACCCATCGACTTCCGAATTATTCTGCGTGGGAAGGATGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAAAAAGTCACATATAAGCCACAGCCTAGTACTGCTGATGGGATACCCAAGGATGCAAATATGGCTGCTACTGTCACCATTGGGTTTGTGAAGGATGCAAAACATCATATTGATGTTCAGGGGTTCAATGTCTATCACAAGAATCGACTGATTAAGCCATTTTGGCGGCTTTGGAACGCTGCAGGAAGTGATGGCCGCGGTGTAATAGGTCTGTTAGAAGCCAATTTTGTTGAACCAGCTCATGACAAGCAAGGGTTTGAGCGTACAACAATTCTTTCAAGACTCGAGGCAAAATTAGTGCAAATGCAAAAGACATACTGGTCTACTAATTGTCATAAAATTGGATATGCTGCACGACGTAATAAGAAGGTCAACAATGCTGAAGATAAAGAGACTTCCCCTGATTTTCTTTCTGAAAGGGACGGTACCACATCAGGTGTCAAGAGACCACGTTCACTTTCAGATACATTCCGTTCAAAAACGGCTGACAATGGATATGGGAATATACATGTGTCCAGAAAAGGCAAAAGTACAGTGCAAATCCAAACAAAGTTGACCCCAACAAGATCCGGGGAAGAATCAAGCTCTTCTGAAGCATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCCGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCTAGGGACAAGGACATACATGTTGCTGTATGTGATAAGCAAGTGAATGGCAGTTTTCTTAAGTCATTTACTGCTATGCATTATTCTGGAAAAGATGGTCCAGCTGTGACTGAATTATCTTCAGATATGGACGATACTGAATCCCAACAAGAGTGTACACCATGCAGAGGAACCAGTTTATCTGCCACAAAATCCAAGTCAAAGGGAAATGATTTTAATTTGGAGGATTTGAGCATTGTGCAGCGATTGAGAAAGGAGAATCATGAACTGAAAGAAAAATTGAAAAAACAGGACGAACAGGCTCCAGCTGAATTGCTTAAGGACTTGATGCTGGAAAGGGAGAAGAACATAACACTTGAAACCAAGCTGAAAGAAGCAGAAAAACAGATCGAGTTCTTGAACAAGGAACAAGACAGTCTAATTGATATATTCACGGATGAGAGGCAGCGACGAGATGATGAAGAGAACAAGTTGAGAAAGAAGCTGCAGGATGCATCTAATACTATTCAAGAGTTGGTTGAGAAGGTAAGGGAGCTGGAAAGGAGGAAGCCTCCTAAGATGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

883

Amino Acids

99.15

Weight (kDa)

6.79

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	161 - 257	2e-16	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	162 - 241	2.2e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	391 - 536	7.8e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1606
Acc65I	GGTACC	1 cut(s)	1712
AccB1I	GGYRCC	4 cut(s)	65, 79, 295, 1712
AccB7I	CCANNNNNTGG	1 cut(s)	912
AccI	GTMKAC	1 cut(s)	1610
AccII	CGCG	5 cut(s)	101, 189, 283, 1107, 1485
AclWI	GGATC	7 cut(s)	236, 249, 891, 896, 981, 1067, 1848
AcoI	YGGCCR	2 cut(s)	1480, 2005
AcsI	RAATTY	1 cut(s)	922
AcuI	CTGAAG	5 cut(s)	215, 923, 1689, 1899, 2187
AcyI	GRCGYC	3 cut(s)	66, 174, 296
AfaI	GTAC	7 cut(s)	715, 884, 1318, 1552, 1714, 1819, 2239
AfiI	CCNNNNNNNGG	7 cut(s)	315, 321, 912, 1908, 1974, 2040, 2249
AflII	CTTAAG	2 cut(s)	2141, 2399
AflIII	ACRYGT	3 cut(s)	187, 1795, 2101
AhdI	GACNNNNNGTC	2 cut(s)	127, 640
AjiI	CACGTC	2 cut(s)	37, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	908, 940
AloI	GAACNNNNNNTCC	2 cut(s)	965, 997
Alw21I	GWGCWC	2 cut(s)	824, 1257
Alw26I	GTCTC	3 cut(s)	627, 1673, 1726
AlwI	GGATC	7 cut(s)	236, 249, 891, 896, 981, 1067, 1848
Ama87I	CYCGRG	2 cut(s)	1008, 1571
AoxI	GGCC	3 cut(s)	312, 1480, 2005
ApeKI	GCWGC	7 cut(s)	1190, 1352, 1466, 1637, 2323, 2527, 2566
ApoI	RAATTY	1 cut(s)	922
ArsI	GACNNNNNNTTYG	2 cut(s)	2264, 2296
Asp718I	GGTACC	1 cut(s)	1712
AspLEI	GCGC	3 cut(s)	68, 103, 298
AspS9I	GGNCC	3 cut(s)	312, 418, 2180
AsuC2I	CCSGG	3 cut(s)	310, 316, 1858
AsuHPI	GGTGA	4 cut(s)	25, 939, 968, 1354
AvaI	CYCGRG	2 cut(s)	1008, 1571
AvaII	GGWCC	2 cut(s)	418, 2180
BaeI	ACNNNNGTAYC	4 cut(s)	828, 861, 926, 959
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	4 cut(s)	65, 79, 295, 1712
BanII	GRGCYC	1 cut(s)	478
BarI	GAAGNNNNNNTAC	2 cut(s)	1872, 1904
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	2 cut(s)	824, 1257
BbvI	GCAGC	7 cut(s)	1202, 1339, 1453, 1624, 2335, 2539, 2553
BccI	CCATC	8 cut(s)	211, 409, 761, 1223, 1319, 1472, 2171, 2635
BceAI	ACGGC	3 cut(s)	161, 1785, 1992
BciVI	GTATCC	1 cut(s)	1323
BcnI	CCSGG	3 cut(s)	310, 316, 1858
BcoDI	GTCTC	3 cut(s)	627, 1673, 1726
BfaI	CTAG	4 cut(s)	500, 957, 1314, 2085
BfmI	CTRYAG	2 cut(s)	1467, 2567
BfoI	RGCGCY	2 cut(s)	69, 299
BfrI	CTTAAG	2 cut(s)	2141, 2399
BfuI	GTATCC	1 cut(s)	1323
BglI	GCCNNNNNGGC	2 cut(s)	74, 1450
BmcAI	AGTACT	1 cut(s)	1318
Bme1390I	CCNGG	3 cut(s)	310, 316, 1858
Bme18I	GGWCC	2 cut(s)	418, 2180
BmeRI	GACNNNNNGTC	2 cut(s)	127, 640
BmeT110I	CYCGRG	2 cut(s)	1008, 1571
BmgBI	CACGTC	2 cut(s)	37, 736
BmgT120I	GGNCC	3 cut(s)	312, 418, 2180
BmiI	GGNNCC	8 cut(s)	67, 81, 243, 297, 313, 1714, 2254, 2385
BmrFI	CCNGG	3 cut(s)	310, 316, 1858
BmsI	GCATC	8 cut(s)	382, 1057, 1330, 1372, 1892, 2400, 2563, 2585
BpiI	GAAGAC	1 cut(s)	972
BplI	GAGNNNNNCTC	4 cut(s)	131, 163, 2617, 2649
BpmI	CTGGAG	1 cut(s)	2370
BpuMI	CCSGG	3 cut(s)	310, 316, 1858
BsaBI	GATNNNNATC	1 cut(s)	1071
BsaHI	GRCGYC	3 cut(s)	66, 174, 296
BsaI	GGTCTC	1 cut(s)	1726
BsaJI	CCNNGG	7 cut(s)	53, 281, 309, 1000, 1335, 1483, 1857
BsaXI	ACNNNNNCTCC	8 cut(s)	119, 125, 149, 155, 260, 290, 359, 389
Bsc4I	CCNNNNNNNGG	7 cut(s)	315, 321, 912, 1908, 1974, 2040, 2249
Bse118I	RCCGGY	4 cut(s)	232, 292, 298, 1167
Bse1I	ACTGG	5 cut(s)	462, 532, 979, 1610, 2256
Bse8I	GATNNNNATC	1 cut(s)	1071
BseDI	CCNNGG	7 cut(s)	53, 281, 309, 1000, 1335, 1483, 1857
BseJI	GATNNNNATC	1 cut(s)	1071
BseLI	CCNNNNNNNGG	7 cut(s)	315, 321, 912, 1908, 1974, 2040, 2249
BseNI	ACTGG	5 cut(s)	462, 532, 979, 1610, 2256
BseXI	GCAGC	7 cut(s)	1202, 1339, 1453, 1624, 2335, 2539, 2553
BseYI	CCCAGC	2 cut(s)	362, 905
BsgI	GTGCAG	2 cut(s)	1623, 2342
Bsh1236I	CGCG	5 cut(s)	101, 189, 283, 1107, 1485
BshFI	GGCC	3 cut(s)	314, 1482, 2007
BshNI	GGYRCC	4 cut(s)	65, 79, 295, 1712
BsiHKAI	GWGCWC	2 cut(s)	824, 1257
BsiHKCI	CYCGRG	2 cut(s)	1008, 1571
BsiSI	CCGG	9 cut(s)	86, 233, 257, 293, 299, 309, 315, 1168, 1857
BslFI	GGGAC	4 cut(s)	198, 1270, 1721, 2102
BslI	CCNNNNNNNGG	7 cut(s)	315, 321, 912, 1908, 1974, 2040, 2249
BsmAI	GTCTC	3 cut(s)	627, 1673, 1726
BsmFI	GGGAC	4 cut(s)	198, 1270, 1721, 2102
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	314, 1482, 2007
Bso31I	GGTCTC	1 cut(s)	1726
BsoBI	CYCGRG	2 cut(s)	1008, 1571
Bsp1286I	GDGCHC	3 cut(s)	478, 824, 1257
Bsp1407I	TGTACA	1 cut(s)	2237
Bsp143I	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
Bsp68I	TCGCGA	1 cut(s)	1107
BspANI	GGCC	3 cut(s)	314, 1482, 2007
BspFNI	CGCG	5 cut(s)	101, 189, 283, 1107, 1485
BspHI	TCATGA	2 cut(s)	1528, 2344
BspLI	GGNNCC	8 cut(s)	67, 81, 243, 297, 313, 1714, 2254, 2385
BspMAI	CTGCAG	2 cut(s)	1471, 2571
BspPI	GGATC	7 cut(s)	236, 249, 891, 896, 981, 1067, 1848
BspQI	GCTCTTC	1 cut(s)	1879
BspT107I	GGYRCC	4 cut(s)	65, 79, 295, 1712
BspTI	CTTAAG	2 cut(s)	2141, 2399
BspTNI	GGTCTC	1 cut(s)	1726
BsrFI	RCCGGY	4 cut(s)	232, 292, 298, 1167
BsrGI	TGTACA	1 cut(s)	2237
BsrI	ACTGG	5 cut(s)	462, 532, 979, 1610, 2256
BssAI	RCCGGY	4 cut(s)	232, 292, 298, 1167
BssECI	CCNNGG	7 cut(s)	53, 281, 309, 1000, 1335, 1483, 1857
BssMI	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
BssNI	GRCGYC	3 cut(s)	66, 174, 296
BssT1I	CCWWGG	2 cut(s)	1000, 1335
Bst4CI	ACNGT	7 cut(s)	841, 1050, 1137, 1360, 1712, 1822, 2498
Bst6I	CTCTTC	4 cut(s)	52, 194, 1879, 2538
BstACI	GRCGYC	3 cut(s)	66, 174, 296
BstAFI	CTTAAG	2 cut(s)	2141, 2399
BstAUI	TGTACA	1 cut(s)	2237
BstC8I	GCNNGC	8 cut(s)	191, 294, 300, 347, 409, 1899, 1965, 2031
BstDEI	CTNAG	1 cut(s)	2637
BstDSI	CCRYGG	2 cut(s)	281, 1483
BstEII	GGTNACC	1 cut(s)	945
BstFNI	CGCG	5 cut(s)	101, 189, 283, 1107, 1485
BstH2I	RGCGCY	2 cut(s)	69, 299
BstHHI	GCGC	3 cut(s)	68, 103, 298
BstKTI	GATC	7 cut(s)	244, 891, 899, 976, 1075, 1856, 2472
BstMAI	GTCTC	3 cut(s)	627, 1673, 1726
BstMBI	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 74, 289, 482, 1349, 1450
BstNSI	RCATGY	3 cut(s)	643, 1799, 2105
BstPI	GGTNACC	1 cut(s)	945
BstSCI	CCNGG	3 cut(s)	308, 314, 1856
BstSFI	CTRYAG	2 cut(s)	1467, 2567
BstUI	CGCG	5 cut(s)	101, 189, 283, 1107, 1485
BstV1I	GCAGC	7 cut(s)	1202, 1339, 1453, 1624, 2335, 2539, 2553
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	2 cut(s)	241, 1853
BstYI	RGATCY	2 cut(s)	241, 1853
BsuI	GTATCC	1 cut(s)	1323
BsuRI	GGCC	3 cut(s)	314, 1482, 2007
BtgI	CCRYGG	2 cut(s)	281, 1483
BtgZI	GCGATG	2 cut(s)	405, 1122
BtrI	CACGTC	2 cut(s)	37, 736
BtsIMutI	CAGTG	3 cut(s)	525, 947, 1827
BtuMI	TCGCGA	1 cut(s)	1107
Cac8I	GCNNGC	8 cut(s)	191, 294, 300, 347, 409, 1899, 1965, 2031
CciI	TCATGA	2 cut(s)	1528, 2344
CfoI	GCGC	3 cut(s)	68, 103, 298
Cfr10I	RCCGGY	4 cut(s)	232, 292, 298, 1167
Cfr13I	GGNCC	3 cut(s)	312, 418, 2180
Cfr42I	CCGCGG	2 cut(s)	284, 1486
CseI	GACGC	2 cut(s)	182, 195
Csp6I	GTAC	7 cut(s)	714, 883, 1317, 1551, 1713, 1818, 2238
CviQI	GTAC	7 cut(s)	714, 883, 1317, 1551, 1713, 1818, 2238
DdeI	CTNAG	1 cut(s)	2637
DinI	GGCGCC	2 cut(s)	67, 297
DpnI	GATC	7 cut(s)	243, 890, 898, 975, 1074, 1855, 2471
DpnII	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
DraI	TTTAAA	1 cut(s)	706
DrdI	GACNNNNNNGTC	1 cut(s)	1606
DriI	GACNNNNNGTC	2 cut(s)	127, 640
DseDI	GACNNNNNNGTC	1 cut(s)	1606
EaeI	YGGCCR	2 cut(s)	1480, 2005
Eam1104I	CTCTTC	4 cut(s)	52, 194, 1879, 2538
Eam1105I	GACNNNNNGTC	2 cut(s)	127, 640
EarI	CTCTTC	4 cut(s)	52, 194, 1879, 2538
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	1000, 1335
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	1726
Eco47I	GGWCC	2 cut(s)	418, 2180
Eco57I	CTGAAG	5 cut(s)	215, 923, 1689, 1899, 2187
Eco88I	CYCGRG	2 cut(s)	1008, 1571
Eco91I	GGTNACC	1 cut(s)	945
EcoO65I	GGTNACC	1 cut(s)	945
EcoT14I	CCWWGG	2 cut(s)	1000, 1335
EcoT22I	ATGCAT	2 cut(s)	2163, 2578
EcoT38I	GRGCYC	1 cut(s)	478
EgeI	GGCGCC	2 cut(s)	67, 297
EheI	GGCGCC	2 cut(s)	67, 297
ErhI	CCWWGG	2 cut(s)	1000, 1335
FaqI	GGGAC	4 cut(s)	198, 1270, 1721, 2102
FauI	CCCGC	1 cut(s)	404
FblI	GTMKAC	1 cut(s)	1610
FriOI	GRGCYC	1 cut(s)	478
FspBI	CTAG	4 cut(s)	500, 957, 1314, 2085
GlaI	GCGC	3 cut(s)	67, 102, 297
GsaI	CCCAGC	2 cut(s)	366, 909
GsuI	CTGGAG	1 cut(s)	2370
HaeII	RGCGCY	2 cut(s)	69, 299
HaeIII	GGCC	3 cut(s)	314, 1482, 2007
HapII	CCGG	9 cut(s)	86, 233, 257, 293, 299, 309, 315, 1168, 1857
HgaI	GACGC	2 cut(s)	182, 195
HhaI	GCGC	3 cut(s)	68, 103, 298
Hin1I	GRCGYC	3 cut(s)	66, 174, 296
Hin6I	GCGC	3 cut(s)	66, 101, 296
HinP1I	GCGC	3 cut(s)	66, 101, 296
HincII	GTYRAC	2 cut(s)	1660, 1842
HindII	GTYRAC	2 cut(s)	1660, 1842
HpaII	CCGG	9 cut(s)	86, 233, 257, 293, 299, 309, 315, 1168, 1857
HphI	GGTGA	4 cut(s)	25, 939, 968, 1354
Hpy166II	GTNNAC	6 cut(s)	1611, 1660, 1742, 1842, 2238, 2240
Hpy8I	GTNNAC	6 cut(s)	1611, 1660, 1742, 1842, 2238, 2240
Hpy99I	CGWCG	4 cut(s)	38, 176, 1647, 2535
HpyCH4III	ACNGT	7 cut(s)	841, 1050, 1137, 1360, 1712, 1822, 2498
HpyCH4IV	ACGT	7 cut(s)	36, 735, 1645, 1738, 1920, 1986, 2052
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 74, 289, 482, 1349, 1450
HpyF3I	CTNAG	1 cut(s)	2637
HpySE526I	ACGT	7 cut(s)	36, 735, 1645, 1738, 1920, 1986, 2052
Hsp92I	GRCGYC	3 cut(s)	66, 174, 296
HspAI	GCGC	3 cut(s)	66, 101, 296
KasI	GGCGCC	2 cut(s)	65, 295
KpnI	GGTACC	1 cut(s)	1716
KroI	GCCGGC	2 cut(s)	292, 298
KroNI	GCCGGC	2 cut(s)	294, 300
KspI	CCGCGG	2 cut(s)	284, 1486
Kzo9I	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
LguI	GCTCTTC	1 cut(s)	1879
LmnI	GCTCC	7 cut(s)	22, 482, 819, 872, 1054, 2389, 2614
Lsp1109I	GCAGC	7 cut(s)	1202, 1339, 1453, 1624, 2335, 2539, 2553
LweI	GCATC	8 cut(s)	382, 1057, 1330, 1372, 1892, 2400, 2563, 2585
MaeI	CTAG	4 cut(s)	500, 957, 1314, 2085
MaeII	ACGT	7 cut(s)	36, 735, 1645, 1738, 1920, 1986, 2052
MaeIII	GTNAC	5 cut(s)	119, 945, 1294, 1360, 2188
MalI	GATC	7 cut(s)	243, 890, 898, 975, 1074, 1855, 2471
MboI	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
MfeI	CAATTG	1 cut(s)	681
MflI	RGATCY	2 cut(s)	241, 1853
MhlI	GDGCHC	3 cut(s)	478, 824, 1257
MluI	ACGCGT	1 cut(s)	187
Mly113I	GGCGCC	2 cut(s)	66, 296
MlyI	GAGTC	7 cut(s)	83, 116, 137, 140, 143, 149, 1563
MmeI	TCCRAC	4 cut(s)	111, 117, 123, 1032
Mph1103I	ATGCAT	2 cut(s)	2163, 2578
MreI	CGCCGGCG	1 cut(s)	298
MroNI	GCCGGC	2 cut(s)	292, 298
MseI	TTAA	7 cut(s)	336, 543, 705, 1440, 2142, 2298, 2400
MslI	CAYNNNNRTG	2 cut(s)	453, 1398
MspA1I	CMGCKG	4 cut(s)	283, 1485, 2186, 2390
MspCI	CTTAAG	2 cut(s)	2141, 2399
MspI	CCGG	9 cut(s)	86, 233, 257, 293, 299, 309, 315, 1168, 1857
MspR9I	CCNGG	3 cut(s)	310, 316, 1858
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	448
MvnI	CGCG	5 cut(s)	101, 189, 283, 1107, 1485
MwoI	GCNNNNNNNGC	6 cut(s)	49, 74, 289, 482, 1349, 1450
NaeI	GCCGGC	2 cut(s)	294, 300
NarI	GGCGCC	2 cut(s)	66, 296
NciI	CCSGG	3 cut(s)	310, 316, 1858
NdeII	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
NgoMIV	GCCGGC	2 cut(s)	292, 298
NlaIV	GGNNCC	8 cut(s)	67, 81, 243, 297, 313, 1714, 2254, 2385
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	5 cut(s)	119, 945, 1294, 1360, 2188
NruI	TCGCGA	1 cut(s)	1107
NsiI	ATGCAT	2 cut(s)	2163, 2578
NspI	RCATGY	3 cut(s)	643, 1799, 2105
PaeR7I	CTCGAG	2 cut(s)	1008, 1571
PagI	TCATGA	2 cut(s)	1528, 2344
PciI	ACATGT	2 cut(s)	1795, 2101
PciSI	GCTCTTC	1 cut(s)	1879
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	448
PdiI	GCCGGC	2 cut(s)	294, 300
PflMI	CCANNNNNTGG	1 cut(s)	912
PleI	GAGTC	7 cut(s)	83, 116, 136, 140, 142, 148, 1563
PluTI	GGCGCC	2 cut(s)	69, 299
PpsI	GAGTC	7 cut(s)	83, 116, 136, 140, 142, 148, 1563
PscI	ACATGT	2 cut(s)	1795, 2101
PspEI	GGTNACC	1 cut(s)	945
PspFI	CCCAGC	2 cut(s)	362, 905
PspN4I	GGNNCC	8 cut(s)	67, 81, 243, 297, 313, 1714, 2254, 2385
PspPI	GGNCC	3 cut(s)	312, 418, 2180
PspXI	VCTCGAGB	2 cut(s)	1008, 1571
PstI	CTGCAG	2 cut(s)	1471, 2571
PsuI	RGATCY	2 cut(s)	241, 1853
PvuII	CAGCTG	2 cut(s)	2186, 2390
RruI	TCGCGA	1 cut(s)	1107
RsaI	GTAC	7 cut(s)	715, 884, 1318, 1552, 1714, 1819, 2239
RsaNI	GTAC	7 cut(s)	714, 883, 1317, 1551, 1713, 1818, 2238
RseI	CAYNNNNRTG	2 cut(s)	453, 1398
SacII	CCGCGG	2 cut(s)	284, 1486
SapI	GCTCTTC	1 cut(s)	1879
SaqAI	TTAA	7 cut(s)	336, 543, 705, 1440, 2142, 2298, 2400
Sau3AI	GATC	7 cut(s)	241, 888, 896, 973, 1072, 1853, 2469
Sau96I	GGNCC	3 cut(s)	312, 418, 2180
ScaI	AGTACT	1 cut(s)	1318
SchI	GAGTC	7 cut(s)	83, 116, 137, 140, 143, 149, 1563
ScrFI	CCNGG	3 cut(s)	310, 316, 1858
SduI	GDGCHC	3 cut(s)	478, 824, 1257
SfaNI	GCATC	8 cut(s)	382, 1057, 1330, 1372, 1892, 2400, 2563, 2585
SfcI	CTRYAG	2 cut(s)	1467, 2567
SfoI	GGCGCC	2 cut(s)	67, 297
Sfr274I	CTCGAG	2 cut(s)	1008, 1571
Sfr303I	CCGCGG	2 cut(s)	284, 1486
SgrAI	CRCCGGYG	1 cut(s)	298
SgrBI	CCGCGG	2 cut(s)	284, 1486
SinI	GGWCC	2 cut(s)	418, 2180
SlaI	CTCGAG	2 cut(s)	1008, 1571
SmiMI	CAYNNNNRTG	2 cut(s)	453, 1398
SmlI	CTYRAG	4 cut(s)	1008, 1571, 2141, 2399
SmoI	CTYRAG	4 cut(s)	1008, 1571, 2141, 2399
SspDI	GGCGCC	2 cut(s)	65, 295
SspMI	CTAG	4 cut(s)	500, 957, 1314, 2085
StyD4I	CCNGG	3 cut(s)	308, 314, 1856
StyI	CCWWGG	2 cut(s)	1000, 1335
TaaI	ACNGT	7 cut(s)	841, 1050, 1137, 1360, 1712, 1822, 2498
TaiI	ACGT	7 cut(s)	39, 738, 1648, 1741, 1923, 1989, 2055
TaqI	TCGA	5 cut(s)	1009, 1218, 1432, 1572, 2472
TatI	WGTACW	3 cut(s)	1316, 1817, 2237
TauI	GCSGC	6 cut(s)	43, 85, 283, 1210, 1456, 1485
Tru1I	TTAA	7 cut(s)	336, 543, 705, 1440, 2142, 2298, 2400
Tru9I	TTAA	7 cut(s)	336, 543, 705, 1440, 2142, 2298, 2400
TscAI	CASTG	3 cut(s)	532, 947, 1827
TseFI	GTSAC	5 cut(s)	119, 945, 1294, 1360, 2188
TseI	GCWGC	7 cut(s)	1190, 1352, 1466, 1637, 2323, 2527, 2566
Tsp45I	GTSAC	5 cut(s)	119, 945, 1294, 1360, 2188
TspDTI	ATGAA	8 cut(s)	422, 629, 876, 1007, 1056, 1125, 2361, 2556
TspGWI	ACGGA	3 cut(s)	588, 1748, 2531
TspRI	CASTG	3 cut(s)	532, 947, 1827
Van91I	CCANNNNNTGG	1 cut(s)	912
Vha464I	CTTAAG	2 cut(s)	2141, 2399
VpaK11BI	GGWCC	2 cut(s)	418, 2180
XapI	RAATTY	1 cut(s)	922
XbaI	TCTAGA	1 cut(s)	956
XceI	RCATGY	3 cut(s)	643, 1799, 2105
XhoI	CTCGAG	2 cut(s)	1008, 1571
XmiI	GTMKAC	1 cut(s)	1610
XspI	CTAG	4 cut(s)	500, 957, 1314, 2085
ZrmI	AGTACT	1 cut(s)	1318
Zsp2I	ATGCAT	2 cut(s)	2163, 2578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.