MD09G1078200.v1.1

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
5481454 .. 5482792
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1078200.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGTCACAAGAGGGCGAAGTTTTGGGAGGGTCTTCGAAGAAGCGGAAGCTGGGCGGGGCGGGATCAGGCCCGGTTCTCAGTCCTCAGCCGCTGAGGCAGGTGAGAGCCCGGCAGAGCTGTAAGCAGTTTTGGAAGGCTGGGGATTATGAAGGAGCTCCTTGTAGCGATGATCATACTTCTGCGGCTGGTGGGATCGACCACGTTAGGGTTCATCCCAGATTTCTGCATTCCAATGCCACAAGTCACAAGTGGGCTCTCGGCGCTTTTGCCGAGCTTTTAGACAATGCACTGGATGAGGTTTGCAGTGGTGCTACTTACGTCAACGTCGATGTGCTTGAAAACAAGAAAGATGGAAGCAGAATGTTGCTGATCCAAGATGATGGCGGTGGTATGGATCCGAGCAAGATGCGACACTGCATGTCGTTGGGGTATTCGGTGAAAAGTAAAATTAGAGACACCATAGGACAGTATGGAAACGGTTTTAAGACGAGTACTATGAGGCTAGGAGCAGATGTGATCGTGTTTTCGCGCTGCGAAGGAATAGATGGAAAAAGTGATACGCGGAGCATCGGATTGCTGTCTTACACCTTCTTGAAGAGCACTGGAAAGGAAGACATTGTAGTTCCCATGCTTGATTATGAGAGAAGAGGAGGAGCTTGGAGCAAAATGTTTCGATCCTCCGAAAGAGACTGGAAGAAAAATGTCGAGACAATCGTTCAGTGGTCGCCATTTTCTAGCGAAGAAGAGCTGCATCGTCAGTTCTTAACGATCAAGAACCATGGCACCCAAATAATCATTTACAACCTTTGGGAGGACGACGAAGATCAGTTGGAGCTTGACTTTGACACCGACCCTAATGATATTCAACTCAGAGGTGTCAATCGGGACGAGAAGAATATACAAATGGCTCAAGATTATCCCAACTCGCGGGTTTTCTTGACGTACCAGCACTCGTTGCGGAGCTATGCATCGATTCTCTATTTGCGGCTTCCTTCTAACTTTCGGATCATCCTTCGTGGGAAGGAAGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAGCAAGTCACGTATCGGCCAACCGGGGCTGACGGGAACCAAACAAGCGCAAATGTGATGGCTACTGTCACCATCGGGTTTGTAAAGGACGCAGAATCTCATATCGACGTTCAAGGGTTCAATGTTTATCACAAGAATCGACTGATTAAGCCGTTTTGGAGGCTGTGGAATGCTGCAGGAAGCGACGGCAGGGGTGTTATGGGGGTTTGA

Protein Analysis

425

Amino Acids

47.61

Weight (kDa)

6.9

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 87 - 207 5.8e-17 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5 PF17942 317 - 424 1.6e-40 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccB1I GGYRCC 1 cut(s) 782
AccII CGCG 3 cut(s) 529, 562, 928
AclWI GGATC 7 cut(s) 70, 200, 364, 389, 402, 669, 1013
AcoI YGGCCR 1 cut(s) 1082
AfaI GTAC 2 cut(s) 493, 944
AfiI CCNNNNNNNGG 3 cut(s) 205, 811, 927
AgsI TTSAA 5 cut(s) 338, 595, 866, 1178, 1186
AluBI AGCT 8 cut(s) 49, 117, 155, 274, 656, 748, 835, 963
AluI AGCT 8 cut(s) 49, 117, 155, 274, 656, 748, 835, 963
Alw21I GWGCWC 3 cut(s) 157, 602, 1035
Alw26I GTCTC 3 cut(s) 447, 681, 701
AlwI GGATC 7 cut(s) 70, 200, 364, 389, 402, 669, 1013
AlwNI CAGNNNCTG 1 cut(s) 91
AoxI GGCC 2 cut(s) 67, 1082
ApeKI GCWGC 3 cut(s) 531, 748, 1238
AspLEI GCGC 3 cut(s) 263, 531, 1115
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 3 cut(s) 71, 109, 1090
AsuHPI GGTGA 3 cut(s) 112, 448, 1126
AsuII TTCGAA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 782
BanII GRGCYC 3 cut(s) 109, 157, 256
BbsI GAAGAC 2 cut(s) 24, 618
Bbv12I GWGCWC 3 cut(s) 157, 602, 1035
BbvCI CCTCAGC 2 cut(s) 84, 92
BbvI GCAGC 3 cut(s) 518, 735, 1225
BccI CCATC 5 cut(s) 344, 374, 539, 1117, 1145
BceAI ACGGC 2 cut(s) 1201, 1267
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 3 cut(s) 71, 109, 1090
BcoDI GTCTC 3 cut(s) 447, 681, 701
BfaI CTAG 2 cut(s) 503, 735
BfmI CTRYAG 1 cut(s) 1239
BfoI RGCGCY 1 cut(s) 264
BfuAI ACCTGC 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 94
BisI GCNGC 6 cut(s) 89, 183, 532, 749, 986, 1239
BlsI GCNGC 6 cut(s) 90, 184, 533, 750, 987, 1240
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 3 cut(s) 71, 109, 1090
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 3 cut(s) 396, 784, 1103
BmrFI CCNGG 3 cut(s) 71, 109, 1090
BmsI GCATC 4 cut(s) 396, 576, 760, 977
BpiI GAAGAC 2 cut(s) 24, 618
Bpu10I CCTNAGC 2 cut(s) 84, 92
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 894
BpuMI CCSGG 3 cut(s) 71, 109, 1090
Bsa29I ATCGAT 1 cut(s) 971
BsaAI YACGTR 1 cut(s) 1077
BsaJI CCNNGG 2 cut(s) 778, 1089
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 811, 927
Bse1I ACTGG 3 cut(s) 294, 607, 695
BseCI ATCGAT 1 cut(s) 971
BseDI CCNNGG 2 cut(s) 778, 1089
BseGI GGATG 3 cut(s) 211, 298, 1008
BseLI CCNNNNNNNGG 3 cut(s) 205, 811, 927
BseMII CTCAG 4 cut(s) 83, 91, 98, 883
BseNI ACTGG 3 cut(s) 294, 607, 695
BseRI GAGGAG 2 cut(s) 663, 666
BseXI GCAGC 3 cut(s) 518, 735, 1225
BseYI CCCAGC 3 cut(s) 49, 137, 1065
Bsh1236I CGCG 3 cut(s) 529, 562, 928
BshFI GGCC 2 cut(s) 69, 1084
BshNI GGYRCC 1 cut(s) 782
BshVI ATCGAT 1 cut(s) 971
BsiHKAI GWGCWC 3 cut(s) 157, 602, 1035
BsiSI CCGG 3 cut(s) 71, 109, 1089
BslFI GGGAC 2 cut(s) 899, 1048
BslI CCNNNNNNNGG 3 cut(s) 205, 811, 927
BsmAI GTCTC 3 cut(s) 447, 681, 701
BsmFI GGGAC 2 cut(s) 899, 1048
BsmI GAATGC 2 cut(s) 226, 1240
BsnI GGCC 2 cut(s) 69, 1084
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 5 cut(s) 109, 157, 256, 602, 1035
Bsp19I CCATGG 1 cut(s) 778
BspANI GGCC 2 cut(s) 69, 1084
BspCNI CTCAG 4 cut(s) 84, 90, 97, 882
BspDI ATCGAT 1 cut(s) 971
BspFNI CGCG 3 cut(s) 529, 562, 928
BspLI GGNNCC 3 cut(s) 396, 784, 1103
BspMAI CTGCAG 1 cut(s) 1243
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 7 cut(s) 70, 200, 364, 389, 402, 669, 1013
BspQI GCTCTTC 2 cut(s) 590, 738
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 782
BsrI ACTGG 3 cut(s) 294, 607, 695
BssECI CCNNGG 2 cut(s) 778, 1089
BssT1I CCWWGG 1 cut(s) 778
Bst4CI ACNGT 3 cut(s) 468, 479, 1132
Bst6I CTCTTC 3 cut(s) 590, 640, 738
BstAPI GCANNNNNTGC 1 cut(s) 955
BstBAI YACGTR 1 cut(s) 1077
BstBI TTCGAA 1 cut(s) 35
BstDEI CTNAG 4 cut(s) 77, 84, 92, 869
BstDSI CCRYGG 1 cut(s) 778
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 3 cut(s) 211, 298, 1008
BstFNI CGCG 3 cut(s) 529, 562, 928
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 3 cut(s) 263, 531, 1115
BstMAI GTCTC 3 cut(s) 447, 681, 701
BstMWI GCNNNNNNNGC 3 cut(s) 94, 260, 955
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 3 cut(s) 69, 107, 1088
BstSFI CTRYAG 1 cut(s) 1239
BstUI CGCG 3 cut(s) 529, 562, 928
BstV1I GCAGC 3 cut(s) 518, 735, 1225
BstV2I GAAGAC 2 cut(s) 24, 618
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 1 cut(s) 394
Bsu15I ATCGAT 1 cut(s) 971
BsuRI GGCC 2 cut(s) 69, 1084
BsuTUI ATCGAT 1 cut(s) 971
BtgI CCRYGG 1 cut(s) 778
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 3 cut(s) 211, 298, 1008
BtsI GCAGTG 2 cut(s) 310, 412
BtsIMutI CAGTG 5 cut(s) 287, 310, 412, 600, 725
BveI ACCTGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 3 cut(s) 263, 531, 1115
Cfr13I GGNCC 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 971
CseI GACGC 1 cut(s) 1163
Csp6I GTAC 2 cut(s) 492, 943
CviAII CATG 3 cut(s) 418, 628, 779
CviQI GTAC 2 cut(s) 492, 943
DdeI CTNAG 4 cut(s) 77, 84, 92, 869
EaeI YGGCCR 1 cut(s) 1082
Eam1104I CTCTTC 3 cut(s) 590, 640, 738
EarI CTCTTC 3 cut(s) 590, 640, 738
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 778
Eco24I GRGCYC 3 cut(s) 109, 157, 256
Eco53kI GAGCTC 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoT14I CCWWGG 1 cut(s) 778
EcoT22I ATGCAT 1 cut(s) 970
EcoT38I GRGCYC 3 cut(s) 109, 157, 256
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 3 cut(s) 421, 631, 782
FaqI GGGAC 2 cut(s) 899, 1048
FatI CATG 3 cut(s) 417, 627, 778
FauI CCCGC 3 cut(s) 47, 52, 921
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 6 cut(s) 89, 183, 532, 749, 986, 1239
FokI GGATG 3 cut(s) 198, 305, 995
FriOI GRGCYC 3 cut(s) 109, 157, 256
Fsp4HI GCNGC 6 cut(s) 89, 183, 532, 749, 986, 1239
FspBI CTAG 2 cut(s) 503, 735
GlaI GCGC 3 cut(s) 262, 530, 1114
GluI GCNGC 6 cut(s) 89, 183, 532, 749, 986, 1239
GsaI CCCAGC 3 cut(s) 53, 141, 1069
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 2 cut(s) 69, 1084
HapII CCGG 3 cut(s) 71, 109, 1089
HgaI GACGC 1 cut(s) 1163
HhaI GCGC 3 cut(s) 263, 531, 1115
Hin1II CATG 3 cut(s) 421, 631, 782
Hin6I GCGC 3 cut(s) 261, 529, 1113
HinP1I GCGC 3 cut(s) 261, 529, 1113
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 3 cut(s) 973, 1160, 1201
HpaII CCGG 3 cut(s) 71, 109, 1089
HphI GGTGA 3 cut(s) 112, 448, 1126
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 5 cut(s) 399, 572, 682, 872, 1005
Hpy188III TCNNGA 6 cut(s) 592, 706, 772, 884, 911, 937
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 4 cut(s) 329, 821, 1175, 1253
HpyAV CCTTC 7 cut(s) 127, 143, 530, 598, 1002, 1015, 1022
HpyCH4III ACNGT 3 cut(s) 468, 479, 1132
HpyCH4IV ACGT 6 cut(s) 201, 318, 324, 941, 1076, 1173
HpyCH4V TGCA 7 cut(s) 226, 287, 303, 417, 751, 968, 1241
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 260, 955
HpyF3I CTNAG 4 cut(s) 77, 84, 92, 869
HpySE526I ACGT 6 cut(s) 201, 318, 324, 941, 1076, 1173
Hsp92II CATG 3 cut(s) 421, 631, 782
HspAI GCGC 3 cut(s) 261, 529, 1113
Ksp22I TGATCA 1 cut(s) 169
LguI GCTCTTC 2 cut(s) 590, 738
LmnI GCTCC 8 cut(s) 152, 160, 506, 564, 653, 660, 832, 960
Lsp1109I GCAGC 3 cut(s) 518, 735, 1225
LweI GCATC 4 cut(s) 396, 576, 760, 977
MaeI CTAG 2 cut(s) 503, 735
MaeII ACGT 6 cut(s) 201, 318, 324, 941, 1076, 1173
MaeIII GTNAC 4 cut(s) 3, 242, 1072, 1132
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 5 cut(s) 109, 157, 256, 602, 1035
MluCI AATT 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 810
Mph1103I ATGCAT 1 cut(s) 970
MseI TTAA 3 cut(s) 483, 764, 1212
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 3 cut(s) 71, 109, 1089
MspR9I CCNGG 3 cut(s) 71, 109, 1090
Mva1269I GAATGC 2 cut(s) 226, 1240
MvnI CGCG 3 cut(s) 529, 562, 928
MwoI GCNNNNNNNGC 3 cut(s) 94, 260, 955
NciI CCSGG 3 cut(s) 71, 109, 1090
NcoI CCATGG 1 cut(s) 778
NlaIII CATG 3 cut(s) 421, 631, 782
NlaIV GGNNCC 3 cut(s) 396, 784, 1103
NmeAIII GCCGAG 2 cut(s) 237, 295
NmuCI GTSAC 4 cut(s) 3, 242, 1072, 1132
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 1 cut(s) 421
NspV TTCGAA 1 cut(s) 35
PaqCI CACCTGC 1 cut(s) 88
PciSI GCTCTTC 2 cut(s) 590, 738
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 711
PctI GAATGC 2 cut(s) 226, 1240
PfeI GAWTC 3 cut(s) 973, 1160, 1201
PkrI GCNGC 6 cut(s) 90, 184, 533, 750, 987, 1240
Ppu21I YACGTR 1 cut(s) 1077
Psp124BI GAGCTC 1 cut(s) 157
PspFI CCCAGC 3 cut(s) 49, 137, 1065
PspN4I GGNNCC 3 cut(s) 396, 784, 1103
PspPI GGNCC 1 cut(s) 68
PstI CTGCAG 1 cut(s) 1243
PstNI CAGNNNCTG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 2 cut(s) 493, 944
RsaNI GTAC 2 cut(s) 492, 943
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 157
SapI GCTCTTC 2 cut(s) 590, 738
SaqAI TTAA 3 cut(s) 483, 764, 1212
SatI GCNGC 6 cut(s) 89, 183, 532, 749, 986, 1239
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 493
ScrFI CCNGG 3 cut(s) 71, 109, 1090
SduI GDGCHC 5 cut(s) 109, 157, 256, 602, 1035
SfaNI GCATC 4 cut(s) 396, 576, 760, 977
SfcI CTRYAG 1 cut(s) 1239
SfuI TTCGAA 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 909
SmoI CTYRAG 1 cut(s) 909
Sse9I AATT 1 cut(s) 447
SspMI CTAG 2 cut(s) 503, 735
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 3 cut(s) 69, 107, 1088
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 3 cut(s) 468, 479, 1132
TaiI ACGT 6 cut(s) 204, 321, 327, 944, 1079, 1176
TaqI TCGA 8 cut(s) 35, 195, 327, 673, 705, 971, 1170, 1204
TasI AATT 1 cut(s) 447
TatI WGTACW 1 cut(s) 491
TauI GCSGC 3 cut(s) 91, 185, 988
TfiI GAWTC 3 cut(s) 973, 1160, 1201
Tru1I TTAA 3 cut(s) 483, 764, 1212
Tru9I TTAA 3 cut(s) 483, 764, 1212
TscAI CASTG 5 cut(s) 294, 310, 419, 607, 725
TseFI GTSAC 4 cut(s) 3, 242, 1072, 1132
TseI GCWGC 3 cut(s) 531, 748, 1238
Tsp45I GTSAC 4 cut(s) 3, 242, 1072, 1132
TspDTI ATGAA 2 cut(s) 162, 200
TspRI CASTG 5 cut(s) 294, 310, 419, 607, 725
XagI CCTNNNNNAGG 1 cut(s) 809
XceI RCATGY 1 cut(s) 421
XspI CTAG 2 cut(s) 503, 735
ZrmI AGTACT 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.