Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

8734723 .. 8741473

Gene Structure 6751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16919

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGGAGGCGGTGGTGAAGCAGGAGCTTCTGAACGACGTGCCGCACTCTTCGCCGAGGCGGAAGGGCGCCATTTCGGCGGTGCCGCCGGACTCGGTAATCGCGCTTGATACGAGCAGTAGTGACTCGGACTCGGAGTCGGACTCGGAGTCGGAGGAGGAGAACGGGAAGGACGACGCCGTTTTGGGACGCGTGCTGAAGAAGAGGAGGCTGAACGAGATGGGAGTGATTATGCCGGTCTTGGATCCTCTGCCTTCGCCGGAGGAGGAGGAGTTGCCGCGGATGTTGCCGGCGCCGGCGGTGTCCGGGGCCGGGAGGGGGATGTTGAGTGTTAATTACTGCAAGCAGTTTTGGAAGGCTGGGGAGTTTGAGTTAGTGCCTTGTGGCGATGCGGATTCGTCTGCTGGCGGGATGGACCATGTGAGGATTCATCCCAAGTTTCTGCATTCCAATGCAACCAGTCATAAGTGGGCTCTTGGAGCTTTTGCGGAGCTATTAGACAATGCAATAGATGAGGTTTGCACTGGTGCTACTTATGTTAAGGTAGATATGCTTGAAAATCCGAAAGACGGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGAATCCAGATAAGATACGAGACTGCATGTCATTGGGGTTTTCTACAAAGAGCAAAATCGCAAACACAATTGGACAATATGGAAATGGTTTTAAAACAAGTACCATGAGGCTTGGGGCAGACGTGATTGTGTTCTCTCGTTGTTGTGGAAAAGATGGAAAAAGTGCTACGCAGAGCATTGGATTGCTGTCTTACACATTTTTGAGGAGCACAGGAAAGGAAGATACTGTTGTTCCCATGCTTGATTATGAAAGACAAGGAGCAGATTGGTACAGGATCAGACGATCCTCTCCCAGCGATTGGAACAAAAATTTGGAAACGATACTTGAGTGGTCACCATTTTCTAGAGAAGAAGACTTGGATCACCAGTTCTATCTGATGAAAAACCAAGGCACTCGAGTAATTATTTACAATCTTTGGGAGGATGATGAAGGACAGTTGGAGCTTGATTTTGATGCTGATCCACATGATATTCAAATCAGAGGTGTCAATCGCGATGAAAAGAATATACAAATGGCTAAACAGTTTCCTAATTCTCGTCATTTTTTGACCTACCGGCACTCATTGAGGAGTTATGCAGCAATTCTATATTTGCGGCTACCAATCGACTTCCGAATTATTCTGCGTGGGAAGGATGTTGAGCACCACAACATAGTGAATGATATGATGATGTCCCAAAAAGTCACATATAAGCCACAGCCTAGTACTGCTGATGGGATACCCAAGGATGCAAATATGGCTGCTACTGTCACCATTGGGTTTGTGAAGGATGCAAAACATCATATTGATGTTCAGGGGTTCAATGTCTATCACAAGAATCGACTGATTAAGCCATTTTGGCGGCTTTGGAACGCTGCAGGAAGTGATGGCCGCGGTGTAATAGGTCTGTTAGAAGCCAATTTTGTTGAACCAGCTCATGACAAGCAAGGGTTTGAGCGTACAACAATTCTTTCAAGACTCGAGGCAAAATTAGTGCAAATGCAAAAGACATACTGGTCTACTAATTGTCATAAAATTGGATATGCTGCACGACGTAATAAGAAGGTCAACAATGCTGAAGATAAAGAGACTTCCCCTGATTTTCTTTCTGAAAGGGACGGTACCACATCAGGTGTCAAGAGACCATGTTCACTTTCAGATACATTCCGTTCAAAAACGGCTGACAGTGGACATGGGAATATACATGTGTCCAGAAAAGGCAAAAGTACAGTGCAAATCCAAACAAAGTTTACCCCAACAAGATCCGGGGAAGAATCAAGCTCTTCTGAAGCATCACTACCTTTGCCAGCCAATGTTAGGGGTGGAAACATGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAAAGTTAGGGGTGGAAACGTGCATAAACATATGCATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCACTACCTTCGCCAGCCAATGTTAGGGGTGGAAACGTGCATAAACAAGTGAATGGCGGTAGGGAATCTAGGGACAAGGACATACATGTTGCTGTATGTGATAAGCAAGTGAATGGCAGTTTTCATAAGTCATTTACTGCTATGCATTATTCTGGAAAAGATGGTCCAGCTGTGACTGAATTATCTTCAGATATGGACGATACTGAATCCCAACAAGAGTGTACACCATGCAGAGGAACCAGTTTATCTGCCACAAAATCCAAGTCAAAGGGAAATGATTTTAATTTGGAGGATTTGAGCATTGTGCAGCGATTGAGAAAGGAGAATCATGAACTGAAAGAAAAATTGAAAAAACAGGACGAACAGGCTCCAGCTGAATTGCTTAAGGACTTGATGCTGGAAAGGGAGAAGAACATAACACTTGAAACCAAGCTGAAAGAAGCAGAAAAACAGATCGAGTTCTTGAACAAGGAACAAGACAGTCTAATTGATATATTCACGGATGAGAGGCAGCGACGAGATGATGAAGAGAACAAGTTGAGAAAGAAGCTGCAGGATGCATCCAATACTATTCAAGAGTTGGTTGAGAAGGTAAGGGAGCTGGAAAGGAGGAAGCCTCCTAAGATGGAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

903

Amino Acids

101.09

Weight (kDa)

7.17

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	159 - 255	1.8e-16	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c	PF02518	160 - 239	2.6e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	389 - 534	8.1e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1600
Acc65I	GGTACC	1 cut(s)	1706
AccB1I	GGYRCC	4 cut(s)	65, 79, 289, 1706
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccI	GTMKAC	1 cut(s)	1604
AccII	CGCG	5 cut(s)	101, 189, 277, 1101, 1479
AclWI	GGATC	7 cut(s)	236, 249, 885, 890, 975, 1061, 1842
AcoI	YGGCCR	1 cut(s)	1474
AcsI	RAATTY	1 cut(s)	916
AcuI	CTGAAG	4 cut(s)	215, 1683, 1893, 2247
AcyI	GRCGYC	3 cut(s)	66, 174, 290
AfaI	GTAC	7 cut(s)	709, 878, 1312, 1546, 1708, 1813, 2299
AfiI	CCNNNNNNNGG	9 cut(s)	309, 315, 566, 906, 1902, 1968, 2034, 2100, 2309
AflII	CTTAAG	1 cut(s)	2459
AflIII	ACRYGT	3 cut(s)	187, 1789, 2161
AhdI	GACNNNNNGTC	3 cut(s)	133, 145, 634
AjiI	CACGTC	2 cut(s)	37, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	902, 934
AloI	GAACNNNNNNTCC	2 cut(s)	959, 991
Alw21I	GWGCWC	2 cut(s)	818, 1251
Alw26I	GTCTC	3 cut(s)	621, 1667, 1720
AlwI	GGATC	7 cut(s)	236, 249, 885, 890, 975, 1061, 1842
Ama87I	CYCGRG	2 cut(s)	1002, 1565
AoxI	GGCC	2 cut(s)	306, 1474
ApeKI	GCWGC	7 cut(s)	1184, 1346, 1460, 1631, 2383, 2587, 2626
ApoI	RAATTY	1 cut(s)	916
ArsI	GACNNNNNNTTYG	2 cut(s)	2324, 2356
Asp718I	GGTACC	1 cut(s)	1706
AspLEI	GCGC	3 cut(s)	68, 103, 292
AspS9I	GGNCC	3 cut(s)	306, 412, 2240
AsuC2I	CCSGG	3 cut(s)	304, 310, 1852
AsuHPI	GGTGA	4 cut(s)	25, 933, 962, 1348
AvaI	CYCGRG	2 cut(s)	1002, 1565
AvaII	GGWCC	2 cut(s)	412, 2240
BaeI	ACNNNNGTAYC	4 cut(s)	822, 855, 920, 953
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	4 cut(s)	65, 79, 289, 1706
BanII	GRGCYC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	1866, 1898
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	2 cut(s)	818, 1251
BbvI	GCAGC	7 cut(s)	1196, 1333, 1447, 1618, 2395, 2599, 2613
BccI	CCATC	7 cut(s)	211, 403, 755, 1313, 1466, 2231, 2695
BceAI	ACGGC	2 cut(s)	161, 1779
BciVI	GTATCC	1 cut(s)	1317
BcnI	CCSGG	3 cut(s)	304, 310, 1852
BcoDI	GTCTC	3 cut(s)	621, 1667, 1720
BfaI	CTAG	3 cut(s)	951, 1308, 2145
BfmI	CTRYAG	2 cut(s)	1461, 2627
BfoI	RGCGCY	2 cut(s)	69, 293
BfrI	CTTAAG	1 cut(s)	2459
BfuI	GTATCC	1 cut(s)	1317
BglI	GCCNNNNNGGC	2 cut(s)	74, 1444
BmcAI	AGTACT	1 cut(s)	1312
Bme1390I	CCNGG	3 cut(s)	304, 310, 1852
Bme18I	GGWCC	2 cut(s)	412, 2240
BmeRI	GACNNNNNGTC	3 cut(s)	133, 145, 634
BmeT110I	CYCGRG	2 cut(s)	1002, 1565
BmgBI	CACGTC	2 cut(s)	37, 730
BmgT120I	GGNCC	3 cut(s)	306, 412, 2240
BmiI	GGNNCC	8 cut(s)	67, 81, 243, 291, 307, 1708, 2314, 2445
BmrFI	CCNGG	3 cut(s)	304, 310, 1852
BmsI	GCATC	8 cut(s)	376, 1051, 1324, 1366, 1886, 2460, 2623, 2645
BpiI	GAAGAC	1 cut(s)	966
BplI	GAGNNNNNCTC	4 cut(s)	125, 157, 2677, 2709
BpmI	CTGGAG	1 cut(s)	2430
BpuEI	CTTGAG	1 cut(s)	953
BpuMI	CCSGG	3 cut(s)	304, 310, 1852
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaHI	GRCGYC	3 cut(s)	66, 174, 290
BsaI	GGTCTC	1 cut(s)	1720
BsaJI	CCNNGG	7 cut(s)	53, 275, 303, 994, 1329, 1477, 1851
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 353, 383
Bsc4I	CCNNNNNNNGG	9 cut(s)	309, 315, 566, 906, 1902, 1968, 2034, 2100, 2309
Bse118I	RCCGGY	4 cut(s)	232, 286, 292, 1161
Bse1I	ACTGG	5 cut(s)	456, 526, 973, 1604, 2316
Bse8I	GATNNNNATC	1 cut(s)	1065
BseDI	CCNNGG	7 cut(s)	53, 275, 303, 994, 1329, 1477, 1851
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	9 cut(s)	309, 315, 566, 906, 1902, 1968, 2034, 2100, 2309
BseNI	ACTGG	5 cut(s)	456, 526, 973, 1604, 2316
BseRI	GAGGAG	8 cut(s)	167, 170, 217, 275, 278, 281, 826, 1189
BseXI	GCAGC	7 cut(s)	1196, 1333, 1447, 1618, 2395, 2599, 2613
BseYI	CCCAGC	2 cut(s)	356, 899
BsgI	GTGCAG	2 cut(s)	1617, 2402
Bsh1236I	CGCG	5 cut(s)	101, 189, 277, 1101, 1479
BshFI	GGCC	2 cut(s)	308, 1476
BshNI	GGYRCC	4 cut(s)	65, 79, 289, 1706
BsiHKAI	GWGCWC	2 cut(s)	818, 1251
BsiHKCI	CYCGRG	2 cut(s)	1002, 1565
BsiSI	CCGG	9 cut(s)	86, 233, 257, 287, 293, 303, 309, 1162, 1851
BslFI	GGGAC	4 cut(s)	198, 1264, 1715, 2162
BslI	CCNNNNNNNGG	9 cut(s)	309, 315, 566, 906, 1902, 1968, 2034, 2100, 2309
BsmAI	GTCTC	3 cut(s)	621, 1667, 1720
BsmFI	GGGAC	4 cut(s)	198, 1264, 1715, 2162
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	308, 1476
Bso31I	GGTCTC	1 cut(s)	1720
BsoBI	CYCGRG	2 cut(s)	1002, 1565
Bsp1286I	GDGCHC	3 cut(s)	472, 818, 1251
Bsp1407I	TGTACA	1 cut(s)	2297
Bsp143I	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
Bsp68I	TCGCGA	1 cut(s)	1101
BspANI	GGCC	2 cut(s)	308, 1476
BspFNI	CGCG	5 cut(s)	101, 189, 277, 1101, 1479
BspHI	TCATGA	2 cut(s)	1522, 2404
BspLI	GGNNCC	8 cut(s)	67, 81, 243, 291, 307, 1708, 2314, 2445
BspMAI	CTGCAG	2 cut(s)	1465, 2631
BspPI	GGATC	7 cut(s)	236, 249, 885, 890, 975, 1061, 1842
BspQI	GCTCTTC	1 cut(s)	1873
BspT107I	GGYRCC	4 cut(s)	65, 79, 289, 1706
BspTI	CTTAAG	1 cut(s)	2459
BspTNI	GGTCTC	1 cut(s)	1720
BsrFI	RCCGGY	4 cut(s)	232, 286, 292, 1161
BsrGI	TGTACA	1 cut(s)	2297
BsrI	ACTGG	5 cut(s)	456, 526, 973, 1604, 2316
BssAI	RCCGGY	4 cut(s)	232, 286, 292, 1161
BssECI	CCNNGG	7 cut(s)	53, 275, 303, 994, 1329, 1477, 1851
BssMI	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
BssNI	GRCGYC	3 cut(s)	66, 174, 290
BssT1I	CCWWGG	2 cut(s)	994, 1329
Bst4CI	ACNGT	8 cut(s)	835, 1044, 1131, 1354, 1706, 1772, 1816, 2558
Bst6I	CTCTTC	4 cut(s)	52, 194, 1873, 2598
BstACI	GRCGYC	3 cut(s)	66, 174, 290
BstAFI	CTTAAG	1 cut(s)	2459
BstAUI	TGTACA	1 cut(s)	2297
BstC8I	GCNNGC	9 cut(s)	191, 288, 294, 341, 403, 1893, 1959, 2025, 2091
BstDEI	CTNAG	1 cut(s)	2697
BstDSI	CCRYGG	2 cut(s)	275, 1477
BstEII	GGTNACC	1 cut(s)	939
BstFNI	CGCG	5 cut(s)	101, 189, 277, 1101, 1479
BstH2I	RGCGCY	2 cut(s)	69, 293
BstHHI	GCGC	3 cut(s)	68, 103, 292
BstKTI	GATC	7 cut(s)	244, 885, 893, 970, 1069, 1850, 2532
BstMAI	GTCTC	3 cut(s)	621, 1667, 1720
BstMBI	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 74, 283, 476, 1343, 1444
BstNSI	RCATGY	4 cut(s)	637, 1793, 1918, 2165
BstPI	GGTNACC	1 cut(s)	939
BstSCI	CCNGG	3 cut(s)	302, 308, 1850
BstSFI	CTRYAG	2 cut(s)	1461, 2627
BstUI	CGCG	5 cut(s)	101, 189, 277, 1101, 1479
BstV1I	GCAGC	7 cut(s)	1196, 1333, 1447, 1618, 2395, 2599, 2613
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	2 cut(s)	241, 1847
BstYI	RGATCY	2 cut(s)	241, 1847
BsuI	GTATCC	1 cut(s)	1317
BsuRI	GGCC	2 cut(s)	308, 1476
BtgI	CCRYGG	2 cut(s)	275, 1477
BtgZI	GCGATG	2 cut(s)	399, 1116
BtrI	CACGTC	2 cut(s)	37, 730
BtsIMutI	CAGTG	3 cut(s)	519, 1777, 1821
BtuMI	TCGCGA	1 cut(s)	1101
Cac8I	GCNNGC	9 cut(s)	191, 288, 294, 341, 403, 1893, 1959, 2025, 2091
CciI	TCATGA	2 cut(s)	1522, 2404
CfoI	GCGC	3 cut(s)	68, 103, 292
Cfr10I	RCCGGY	4 cut(s)	232, 286, 292, 1161
Cfr13I	GGNCC	3 cut(s)	306, 412, 2240
Cfr42I	CCGCGG	2 cut(s)	278, 1480
CseI	GACGC	2 cut(s)	182, 195
Csp6I	GTAC	7 cut(s)	708, 877, 1311, 1545, 1707, 1812, 2298
CviQI	GTAC	7 cut(s)	708, 877, 1311, 1545, 1707, 1812, 2298
DdeI	CTNAG	1 cut(s)	2697
DinI	GGCGCC	2 cut(s)	67, 291
DpnI	GATC	7 cut(s)	243, 884, 892, 969, 1068, 1849, 2531
DpnII	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
DraI	TTTAAA	1 cut(s)	700
DrdI	GACNNNNNNGTC	1 cut(s)	1600
DriI	GACNNNNNGTC	3 cut(s)	133, 145, 634
DseDI	GACNNNNNNGTC	1 cut(s)	1600
EaeI	YGGCCR	1 cut(s)	1474
Eam1104I	CTCTTC	4 cut(s)	52, 194, 1873, 2598
Eam1105I	GACNNNNNGTC	3 cut(s)	133, 145, 634
EarI	CTCTTC	4 cut(s)	52, 194, 1873, 2598
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	2 cut(s)	994, 1329
Eco24I	GRGCYC	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	1720
Eco47I	GGWCC	2 cut(s)	412, 2240
Eco57I	CTGAAG	4 cut(s)	215, 1683, 1893, 2247
Eco88I	CYCGRG	2 cut(s)	1002, 1565
Eco91I	GGTNACC	1 cut(s)	939
EcoO65I	GGTNACC	1 cut(s)	939
EcoT14I	CCWWGG	2 cut(s)	994, 1329
EcoT22I	ATGCAT	4 cut(s)	1920, 1998, 2223, 2638
EcoT38I	GRGCYC	1 cut(s)	472
EgeI	GGCGCC	2 cut(s)	67, 291
EheI	GGCGCC	2 cut(s)	67, 291
ErhI	CCWWGG	2 cut(s)	994, 1329
FaqI	GGGAC	4 cut(s)	198, 1264, 1715, 2162
FauI	CCCGC	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	1992
FblI	GTMKAC	1 cut(s)	1604
FriOI	GRGCYC	1 cut(s)	472
FspBI	CTAG	3 cut(s)	951, 1308, 2145
GlaI	GCGC	3 cut(s)	67, 102, 291
GsaI	CCCAGC	2 cut(s)	360, 903
GsuI	CTGGAG	1 cut(s)	2430
HaeII	RGCGCY	2 cut(s)	69, 293
HaeIII	GGCC	2 cut(s)	308, 1476
HapII	CCGG	9 cut(s)	86, 233, 257, 287, 293, 303, 309, 1162, 1851
HgaI	GACGC	2 cut(s)	182, 195
HhaI	GCGC	3 cut(s)	68, 103, 292
Hin1I	GRCGYC	3 cut(s)	66, 174, 290
Hin6I	GCGC	3 cut(s)	66, 101, 290
HinP1I	GCGC	3 cut(s)	66, 101, 290
HincII	GTYRAC	1 cut(s)	1654
HindII	GTYRAC	1 cut(s)	1654
HpaII	CCGG	9 cut(s)	86, 233, 257, 287, 293, 303, 309, 1162, 1851
HphI	GGTGA	4 cut(s)	25, 933, 962, 1348
Hpy166II	GTNNAC	7 cut(s)	1605, 1654, 1736, 1775, 1836, 2298, 2300
Hpy8I	GTNNAC	7 cut(s)	1605, 1654, 1736, 1775, 1836, 2298, 2300
Hpy99I	CGWCG	4 cut(s)	38, 176, 1641, 2595
HpyCH4III	ACNGT	8 cut(s)	835, 1044, 1131, 1354, 1706, 1772, 1816, 2558
HpyCH4IV	ACGT	6 cut(s)	36, 729, 1639, 1980, 2046, 2112
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 74, 283, 476, 1343, 1444
HpyF3I	CTNAG	1 cut(s)	2697
HpySE526I	ACGT	6 cut(s)	36, 729, 1639, 1980, 2046, 2112
Hsp92I	GRCGYC	3 cut(s)	66, 174, 290
HspAI	GCGC	3 cut(s)	66, 101, 290
KasI	GGCGCC	2 cut(s)	65, 289
KpnI	GGTACC	1 cut(s)	1710
KroI	GCCGGC	2 cut(s)	286, 292
KroNI	GCCGGC	2 cut(s)	288, 294
KspI	CCGCGG	2 cut(s)	278, 1480
Kzo9I	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
LguI	GCTCTTC	1 cut(s)	1873
LmnI	GCTCC	8 cut(s)	22, 476, 487, 813, 866, 1048, 2449, 2674
Lsp1109I	GCAGC	7 cut(s)	1196, 1333, 1447, 1618, 2395, 2599, 2613
LweI	GCATC	8 cut(s)	376, 1051, 1324, 1366, 1886, 2460, 2623, 2645
MaeI	CTAG	3 cut(s)	951, 1308, 2145
MaeII	ACGT	6 cut(s)	36, 729, 1639, 1980, 2046, 2112
MaeIII	GTNAC	5 cut(s)	119, 939, 1288, 1354, 2248
MalI	GATC	7 cut(s)	243, 884, 892, 969, 1068, 1849, 2531
MboI	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	241, 1847
MhlI	GDGCHC	3 cut(s)	472, 818, 1251
MluI	ACGCGT	1 cut(s)	187
Mly113I	GGCGCC	2 cut(s)	66, 290
MlyI	GAGTC	7 cut(s)	83, 116, 122, 134, 143, 155, 1557
MmeI	TCCRAC	3 cut(s)	117, 129, 1026
Mph1103I	ATGCAT	4 cut(s)	1920, 1998, 2223, 2638
MreI	CGCCGGCG	1 cut(s)	292
MroNI	GCCGGC	2 cut(s)	286, 292
MseI	TTAA	6 cut(s)	330, 537, 699, 1434, 2358, 2460
MslI	CAYNNNNRTG	3 cut(s)	447, 1392, 1995
MspA1I	CMGCKG	4 cut(s)	277, 1479, 2246, 2450
MspCI	CTTAAG	1 cut(s)	2459
MspI	CCGG	9 cut(s)	86, 233, 257, 287, 293, 303, 309, 1162, 1851
MspR9I	CCNGG	3 cut(s)	304, 310, 1852
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	442
MvnI	CGCG	5 cut(s)	101, 189, 277, 1101, 1479
MwoI	GCNNNNNNNGC	6 cut(s)	49, 74, 283, 476, 1343, 1444
NaeI	GCCGGC	2 cut(s)	288, 294
NarI	GGCGCC	2 cut(s)	66, 290
NciI	CCSGG	3 cut(s)	304, 310, 1852
NdeI	CATATG	1 cut(s)	1992
NdeII	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
NgoMIV	GCCGGC	2 cut(s)	286, 292
NlaIV	GGNNCC	8 cut(s)	67, 81, 243, 291, 307, 1708, 2314, 2445
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	5 cut(s)	119, 939, 1288, 1354, 2248
NruI	TCGCGA	1 cut(s)	1101
NsiI	ATGCAT	4 cut(s)	1920, 1998, 2223, 2638
NspI	RCATGY	4 cut(s)	637, 1793, 1918, 2165
PaeR7I	CTCGAG	2 cut(s)	1002, 1565
PagI	TCATGA	2 cut(s)	1522, 2404
PciI	ACATGT	2 cut(s)	1789, 2161
PciSI	GCTCTTC	1 cut(s)	1873
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	442
PdiI	GCCGGC	2 cut(s)	288, 294
PflMI	CCANNNNNTGG	1 cut(s)	906
PleI	GAGTC	7 cut(s)	83, 116, 122, 134, 142, 154, 1557
PluTI	GGCGCC	2 cut(s)	69, 293
PpsI	GAGTC	7 cut(s)	83, 116, 122, 134, 142, 154, 1557
PscI	ACATGT	2 cut(s)	1789, 2161
PspEI	GGTNACC	1 cut(s)	939
PspFI	CCCAGC	2 cut(s)	356, 899
PspN4I	GGNNCC	8 cut(s)	67, 81, 243, 291, 307, 1708, 2314, 2445
PspPI	GGNCC	3 cut(s)	306, 412, 2240
PspXI	VCTCGAGB	2 cut(s)	1002, 1565
PstI	CTGCAG	2 cut(s)	1465, 2631
PsuI	RGATCY	2 cut(s)	241, 1847
PvuII	CAGCTG	2 cut(s)	2246, 2450
RruI	TCGCGA	1 cut(s)	1101
RsaI	GTAC	7 cut(s)	709, 878, 1312, 1546, 1708, 1813, 2299
RsaNI	GTAC	7 cut(s)	708, 877, 1311, 1545, 1707, 1812, 2298
RseI	CAYNNNNRTG	3 cut(s)	447, 1392, 1995
SacII	CCGCGG	2 cut(s)	278, 1480
SapI	GCTCTTC	1 cut(s)	1873
SaqAI	TTAA	6 cut(s)	330, 537, 699, 1434, 2358, 2460
Sau3AI	GATC	7 cut(s)	241, 882, 890, 967, 1066, 1847, 2529
Sau96I	GGNCC	3 cut(s)	306, 412, 2240
ScaI	AGTACT	1 cut(s)	1312
SchI	GAGTC	7 cut(s)	83, 116, 122, 134, 143, 155, 1557
ScrFI	CCNGG	3 cut(s)	304, 310, 1852
SduI	GDGCHC	3 cut(s)	472, 818, 1251
SfaNI	GCATC	8 cut(s)	376, 1051, 1324, 1366, 1886, 2460, 2623, 2645
SfcI	CTRYAG	2 cut(s)	1461, 2627
SfoI	GGCGCC	2 cut(s)	67, 291
Sfr274I	CTCGAG	2 cut(s)	1002, 1565
Sfr303I	CCGCGG	2 cut(s)	278, 1480
SgrAI	CRCCGGYG	1 cut(s)	292
SgrBI	CCGCGG	2 cut(s)	278, 1480
SinI	GGWCC	2 cut(s)	412, 2240
SlaI	CTCGAG	2 cut(s)	1002, 1565
SmiMI	CAYNNNNRTG	3 cut(s)	447, 1392, 1995
SmlI	CTYRAG	4 cut(s)	932, 1002, 1565, 2459
SmoI	CTYRAG	4 cut(s)	932, 1002, 1565, 2459
SspDI	GGCGCC	2 cut(s)	65, 289
SspMI	CTAG	3 cut(s)	951, 1308, 2145
StyD4I	CCNGG	3 cut(s)	302, 308, 1850
StyI	CCWWGG	2 cut(s)	994, 1329
TaaI	ACNGT	8 cut(s)	835, 1044, 1131, 1354, 1706, 1772, 1816, 2558
TaiI	ACGT	6 cut(s)	39, 732, 1642, 1983, 2049, 2115
TaqI	TCGA	5 cut(s)	1003, 1212, 1426, 1566, 2532
TatI	WGTACW	3 cut(s)	1310, 1811, 2297
TauI	GCSGC	6 cut(s)	43, 85, 277, 1204, 1450, 1479
Tru1I	TTAA	6 cut(s)	330, 537, 699, 1434, 2358, 2460
Tru9I	TTAA	6 cut(s)	330, 537, 699, 1434, 2358, 2460
TscAI	CASTG	3 cut(s)	526, 1777, 1821
TseFI	GTSAC	5 cut(s)	119, 939, 1288, 1354, 2248
TseI	GCWGC	7 cut(s)	1184, 1346, 1460, 1631, 2383, 2587, 2626
Tsp45I	GTSAC	5 cut(s)	119, 939, 1288, 1354, 2248
TspDTI	ATGAA	9 cut(s)	416, 623, 870, 1001, 1050, 1119, 2189, 2421, 2616
TspGWI	ACGGA	3 cut(s)	582, 1742, 2591
TspRI	CASTG	3 cut(s)	526, 1777, 1821
Van91I	CCANNNNNTGG	1 cut(s)	906
Vha464I	CTTAAG	1 cut(s)	2459
VpaK11BI	GGWCC	2 cut(s)	412, 2240
XapI	RAATTY	1 cut(s)	916
XbaI	TCTAGA	1 cut(s)	950
XceI	RCATGY	4 cut(s)	637, 1793, 1918, 2165
XhoI	CTCGAG	2 cut(s)	1002, 1565
XmiI	GTMKAC	1 cut(s)	1604
XspI	CTAG	3 cut(s)	951, 1308, 2145
ZrmI	AGTACT	1 cut(s)	1312
Zsp2I	ATGCAT	4 cut(s)	1920, 1998, 2223, 2638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.