Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002310

Physical Location & Seq

Genomic Coordinates Reverse (-)

28202008 .. 28209043

Gene Structure 7036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1137200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGACGCGAGGGTGAAGCAGGAGCTCCTGGAAGCTTCGTATATTCCAACGCCGAAGCGAAGCGGCGTCGGTTGTAAGTTGCCGCCGGATTCCGTAATTTGCCTGAGCACGAGTAGCGACAGTAGCAGCAGCGACTCCGACTCCGACGATTCGGCGGTCGGCGGCGGCGGAGCTTCGGGGGTTTTGACGAAGAAGAGGAAGTTGGACGGGATGGGAGTCGGATTTCCGGTTGGGTTTTTGAGCCCTCTACCGCCAGAAGAGGTGGGGCGGCTGCTTCCCGGGCCGGATGCGGCGGTTGCGCGAAGGGAAGAGCGCGGGGTGATGAGTCGGTCGCACTTTAAGCAGTTTTGGAAGGCCGGGGATTATGAAGGATCTCCTTGTGGCGATTGGGATTCTTCTGCCGGTGGGATAGACCATGTCCGGGTTCACCCAAAGTTTCTGCATTCGAATGCTACGAGCCATAAGTGGGCCCTTGGAGCTTTCGCCGAGCTCTTAGACAACGCATTGGACGAGGTTTGCAGTGGTGCTACATATGTTAATATAGATATGCTTGAAAATAAGAAAGACAGAAGCAGAATGTTGCTGATTGAAGATAATGGTGGTGGGATGGGTCCAGATAAGATGCGACATTGCATGTCGTTGGGGTATTCTGCGAAAAGCAAAGTTGCAAACACTATTGGACAATATGGAAATGGCTTTAAGACAAGTACCATGAGGCTTGGAGCAGATGTAATTGTGTTCTCTCGTTCTAGTGGAAAAGATGGAAAAAGTGCTACACAGAGCATTGGATTGCTGTCTTACACATTTTTGACGAGCACAGGAAAGGAAGATATTGTAGTTCCCATGCTTGACTATGAGAGAGGACAAGGGGCTTGGAACAAGATGTTAAGATCCTCGTCAATTGATTGGGATAAAAATTTGGAAACAATAATCCAATGGTCCCCATTTTTTGATGAAGAAGACCTGCTTCATCAGTTCTATATGATGAAAACCCATGGAACCCGAATAATCATCTACAACCTTTGGGAGGATGATGAAGGACAGCTGGAGCTTGATTTTGAAGCTGATCCACATGATATTCAAATTAGAGGTGTCAATCGAGACGAGAAGAGTATACAAATGGCAAAAGACCATCCCAATTCTCGTTTTTTCTTAACCTACCAGCACTCATTGAGGAGCTATGTATCAATTCTCTATTTGCGGATTCCTCATAACTTTCGAATTATTCTTCGCGGGAAGGATGTTGAGCACCACAACATAGTCAATGATATGATGATGTCCCAGCAAGTCACATATCGGCCACAGCCTGGTGCTGATGGGGTTACAAAGGATTCAAATATGGTTGCTGTTGTCACCATTGGGTTTGTGAAGGACGCAAAACATCATATTGATGTTCAAGGGTTTAATGTATATCACAAGAATCGACTGATTAAGCCATTTTGGAGGCTTTGGAATGCTGCAGGAAGTGACGGCCGTGGTGTTATAGGTCTTTTAGAAGCTAATTTTGTTGAACCAGCTCATGATAAGCAGGGGTTTGAGCGTACAACAGTTCTTCAAAGACTGGAGGGAAAATTAATAGCTATGCAAAAGACTTACTGGAGAGACAATTGTCATAAAATCGGTTATGCTCCACGGAATAAGAATGGCTCTGCAGATAAAGAGGGTCCTCCCTATGAAACGAATGGTAATACATCAGGCAGCAAGAAACCGGTTAATGTTTCCAGCAAGCTCCGTTCTAAAGCTTCAAAAAATATTTCTACTTATCATGGGCATGTGAATGTACACACGTCTGATAAAGCCACAAAAAGAGTGCAATCGCCCACAAAATCAGGGGAAGGATCGTCAAGCTCATCTGAACCACCATCACCTTCAGCAGTCAATGTTACCAATAAACAAGTGAATGGCAGTAGTAGTAAGGCATTTTCTGCTAAGAAATACTCTGGAAAAGATGTCCCGGTGACTCGGTTATCTTCATGTATGGACGGTACTCAATCTCAGCAAGATTATTCAACACGTGGAGGAACCAGTTTACACACCCCAAGTTCCAAGTCAAAGGGGAATGATGTCAATGGTGATTCAGGCGTTTTGGAGCGATTGAGAAAAGAGAATCGTGAACTGAAGCAAAGGTTGGAGGCGGAGAAGGACAGAGCAACTTCTGCTGATTTGGAGCAGGACTTGCAGCGTGAAAAGGATAGATCCAAGTTACTTGAAACTCAGCTCCAAACGGCACAAGAAAAAATTGAGGAAATGAGCAGGGAACAAGAAACTCTAATTGGCATATTCTCCGAGGAGAGGGAGCGACGAGACAATGAAGAGGCCACTTTGAGAAAGAAGCTGCAGGATGCATCCAGTACCATTCAATTATTGCTTGAAAAGGTAAGGGAACTCGAAGCAAAGAAGTCCGGGAACTTGAAATCCAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006282 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016020 GO:0016462 GO:0016604 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031935 GO:0031974 GO:0031981 GO:0032101 GO:0032103 GO:0033043 GO:0033044 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043621 GO:0043900 GO:0043902 GO:0044030 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1902275 GO:1902288 GO:1902290 GO:1903506 GO:2000112 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

809

Amino Acids

89.78

Weight (kDa)

8.68

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	159 - 256	9.5e-17	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5	PF17942	389 - 533	1.4e-60	Morc6 ribosomal protein S5 domain 2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24970 AT5G50780 AT5G50780 AT5G50780
fragaria_vesca	FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_5g08810 FvH4_6g42820
malus_domestica	MD06G1137200.v1.1 MD09G1078200.v1.1 MD14G1151900.v1.1 MD17G1068200.v1.1 MD17G1068600.v1.1
prunus_persica	Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1 Prupe.5G147000_v2.0.a1
pyrus_communis	pycom06g12840 pycom14g12650 pycom17g06890
rosa_chinensis	RchiOBHm_Chr2g0158661 RchiOBHm_Chr7g0189451
rosa_laevigata	RLG00000004610 RLG00000021104
rosa_multiflora	Rmu_sc0004188.1_g000012
rosa_roxburghii	Rroxscaffold_2G00091130 Rroxscaffold_3G00265430
rosa_rugosa	Rorug02G0471200 Rorug06G0498000 Rorug06G0498100
rosa_samantha	Rh2AG537000 Rh2BG550200 Rh2CG520700 Rh2DG559800 Rh7AG102800 Rh7BG105500 Rh7CG107300 Rh7DG104900
rosa_wichuraiana	Rw2G044460 Rw7G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	972
AccB7I	CCANNNNNTGG	1 cut(s)	1307
AccI	GTMKAC	1 cut(s)	1114
AccII	CGCG	4 cut(s)	8, 301, 315, 1233
AclWI	GGATC	5 cut(s)	379, 885, 1061, 1846, 2190
AcoI	YGGCCR	2 cut(s)	1298, 1471
AcsI	RAATTY	1 cut(s)	916
AcuI	CTGAAG	2 cut(s)	1854, 2138
AcvI	CACGTG	1 cut(s)	2015
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	5 cut(s)	709, 1543, 1782, 1987, 2353
AfiI	CCNNNNNNNGG	5 cut(s)	421, 466, 1027, 1307, 2292
AflIII	ACRYGT	2 cut(s)	1785, 2012
AgeI	ACCGGT	1 cut(s)	1708
AjiI	CACGTC	1 cut(s)	1788
AjnI	CCWGG	2 cut(s)	27, 1306
AjuI	GAANNNNNNNTTGG	6 cut(s)	185, 217, 2111, 2143, 2256, 2288
AloI	GAACNNNNNNTCC	1 cut(s)	2399
Alw21I	GWGCWC	5 cut(s)	27, 110, 492, 818, 1251
Alw26I	GTCTC	3 cut(s)	1095, 1596, 2298
AlwI	GGATC	5 cut(s)	379, 885, 1061, 1846, 2190
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	6 cut(s)	281, 354, 468, 1298, 1471, 2316
ApaI	GGGCCC	1 cut(s)	472
ApeKI	GCWGC	7 cut(s)	126, 129, 271, 1457, 1698, 2179, 2335
ApoI	RAATTY	1 cut(s)	916
AseI	ATTAAT	1 cut(s)	1574
AsiGI	ACCGGT	1 cut(s)	1708
AspLEI	GCGC	2 cut(s)	301, 315
AspS9I	GGNCC	6 cut(s)	281, 468, 469, 611, 939, 1664
AsuC2I	CCSGG	6 cut(s)	279, 280, 358, 422, 1955, 2404
AsuHPI	GGTGA	7 cut(s)	25, 331, 419, 1345, 1857, 1969, 2084
AsuII	TTCGAA	2 cut(s)	446, 1219
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	3 cut(s)	611, 939, 1664
BaeGI	GKGCMC	1 cut(s)	472
BanII	GRGCYC	4 cut(s)	27, 245, 472, 492
BauI	CACGAG	1 cut(s)	109
BbrPI	CACGTG	1 cut(s)	2015
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	5 cut(s)	27, 110, 492, 818, 1251
BbvI	GCAGC	7 cut(s)	138, 141, 258, 1444, 1710, 2191, 2322
BccI	CCATC	6 cut(s)	205, 601, 755, 1140, 1310, 1870
BceAI	ACGGC	3 cut(s)	1458, 1486, 2241
BciT130I	CCWGG	2 cut(s)	29, 1308
BcnI	CCSGG	6 cut(s)	279, 280, 358, 422, 1955, 2404
BcoDI	GTCTC	3 cut(s)	1095, 1596, 2298
BfaI	CTAG	1 cut(s)	750
BfmI	CTRYAG	3 cut(s)	1458, 1650, 2336
BfuAI	ACCTGC	1 cut(s)	972
Bme1390I	CCNGG	8 cut(s)	29, 279, 280, 358, 422, 1308, 1955, 2404
Bme18I	GGWCC	3 cut(s)	611, 939, 1664
BmeT110I	CYCGRG	1 cut(s)	278
BmgBI	CACGTC	1 cut(s)	1788
BmgT120I	GGNCC	6 cut(s)	281, 468, 469, 611, 939, 1664
BmiI	GGNNCC	6 cut(s)	470, 612, 941, 1000, 1665, 2023
BmrFI	CCNGG	8 cut(s)	29, 279, 280, 358, 422, 1308, 1955, 2404
BmsI	GCATC	4 cut(s)	277, 612, 2332, 2354
BoxI	GACNNNNGTC	1 cut(s)	1608
BpiI	GAAGAC	1 cut(s)	966
BpmI	CTGGAG	3 cut(s)	1067, 1583, 1618
Bpu10I	CCTNAGC	1 cut(s)	104
Bpu14I	TTCGAA	2 cut(s)	446, 1219
BpuMI	CCSGG	6 cut(s)	279, 280, 358, 422, 1955, 2404
BsaAI	YACGTR	1 cut(s)	2015
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	7 cut(s)	278, 357, 472, 994, 1474, 1631, 2286
BsaWI	WCCGGW	2 cut(s)	226, 1708
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 714, 744
Bsc4I	CCNNNNNNNGG	5 cut(s)	421, 466, 1027, 1307, 2292
Bse118I	RCCGGY	2 cut(s)	401, 1708
Bse1I	ACTGG	4 cut(s)	1566, 1601, 2025, 2349
Bse3DI	GCAATG	1 cut(s)	628
BseBI	CCWGG	2 cut(s)	29, 1308
BseDI	CCNNGG	7 cut(s)	278, 357, 472, 994, 1474, 1631, 2286
BseGI	GGATG	8 cut(s)	216, 292, 612, 1036, 1132, 1246, 2345, 2347
BseLI	CCNNNNNNNGG	5 cut(s)	421, 466, 1027, 1307, 2292
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	3 cut(s)	95, 2009, 2228
BseNI	ACTGG	4 cut(s)	1566, 1601, 2025, 2349
BseRI	GAGGAG	2 cut(s)	1189, 2303
BseSI	GKGCMC	1 cut(s)	472
BseX3I	CGGCCG	1 cut(s)	1471
BseXI	GCAGC	7 cut(s)	138, 141, 258, 1444, 1710, 2191, 2322
BseYI	CCCAGC	1 cut(s)	1281
Bsh1236I	CGCG	4 cut(s)	8, 301, 315, 1233
Bsh1285I	CGRYCG	3 cut(s)	159, 332, 1474
BshFI	GGCC	6 cut(s)	283, 356, 470, 1300, 1473, 2318
BshTI	ACCGGT	1 cut(s)	1708
BsiEI	CGRYCG	3 cut(s)	159, 332, 1474
BsiHKAI	GWGCWC	5 cut(s)	27, 110, 492, 818, 1251
BsiHKCI	CYCGRG	1 cut(s)	278
BslFI	GGGAC	3 cut(s)	925, 1264, 1937
BslI	CCNNNNNNNGG	5 cut(s)	421, 466, 1027, 1307, 2292
BsmAI	GTCTC	3 cut(s)	1095, 1596, 2298
BsmBI	CGTCTC	1 cut(s)	1095
BsmFI	GGGAC	3 cut(s)	925, 1264, 1937
BsmI	GAATGC	3 cut(s)	442, 454, 1459
BsnI	GGCC	6 cut(s)	283, 356, 470, 1300, 1473, 2318
BsoBI	CYCGRG	1 cut(s)	278
Bsp119I	TTCGAA	2 cut(s)	446, 1219
Bsp120I	GGGCCC	1 cut(s)	468
Bsp1286I	GDGCHC	7 cut(s)	27, 110, 245, 472, 492, 818, 1251
Bsp1407I	TGTACA	1 cut(s)	1780
Bsp143I	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
Bsp19I	CCATGG	1 cut(s)	994
BspANI	GGCC	6 cut(s)	283, 356, 470, 1300, 1473, 2318
BspCNI	CTCAG	3 cut(s)	96, 2008, 2227
BspFNI	CGCG	4 cut(s)	8, 301, 315, 1233
BspHI	TCATGA	1 cut(s)	1519
BspLI	GGNNCC	6 cut(s)	470, 612, 941, 1000, 1665, 2023
BspMAI	CTGCAG	3 cut(s)	1462, 1654, 2340
BspMI	ACCTGC	1 cut(s)	972
BspPI	GGATC	5 cut(s)	379, 885, 1061, 1846, 2190
BspQI	GCTCTTC	1 cut(s)	303
BspT104I	TTCGAA	2 cut(s)	446, 1219
BsrDI	GCAATG	1 cut(s)	628
BsrFI	RCCGGY	2 cut(s)	401, 1708
BsrGI	TGTACA	1 cut(s)	1780
BsrI	ACTGG	4 cut(s)	1566, 1601, 2025, 2349
BssAI	RCCGGY	2 cut(s)	401, 1708
BssECI	CCNNGG	7 cut(s)	278, 357, 472, 994, 1474, 1631, 2286
BssMI	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
BssNAI	GTATAC	1 cut(s)	1115
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	109
BssT1I	CCWWGG	2 cut(s)	472, 994
Bst1107I	GTATAC	1 cut(s)	1115
Bst2BI	CACGAG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	29, 1308
Bst4CI	ACNGT	3 cut(s)	122, 1549, 1985
Bst6I	CTCTTC	5 cut(s)	188, 252, 303, 1103, 2307
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	3 cut(s)	1925, 2156, 2176
BstAUI	TGTACA	1 cut(s)	1780
BstBAI	YACGTR	1 cut(s)	2015
BstBI	TTCGAA	2 cut(s)	446, 1219
BstC8I	GCNNGC	1 cut(s)	1727
BstDEI	CTNAG	5 cut(s)	104, 493, 1929, 1995, 2214
BstDSI	CCRYGG	3 cut(s)	994, 1474, 1631
BstENI	CCTNNNNNAGG	1 cut(s)	1025
BstF5I	GGATG	8 cut(s)	216, 292, 612, 1036, 1132, 1246, 2345, 2347
BstFNI	CGCG	4 cut(s)	8, 301, 315, 1233
BstHHI	GCGC	2 cut(s)	301, 315
BstKTI	GATC	5 cut(s)	374, 893, 1069, 1841, 2198
BstMAI	GTCTC	3 cut(s)	1095, 1596, 2298
BstMBI	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
BstMCI	CGRYCG	3 cut(s)	159, 332, 1474
BstMWI	GCNNNNNNNGC	9 cut(s)	114, 123, 280, 296, 340, 476, 1925, 2156, 2176
BstNI	CCWGG	2 cut(s)	29, 1308
BstNSI	RCATGY	2 cut(s)	637, 1775
BstPAI	GACNNNNGTC	1 cut(s)	1608
BstSCI	CCNGG	8 cut(s)	27, 277, 278, 356, 420, 1306, 1953, 2402
BstSFI	CTRYAG	3 cut(s)	1458, 1650, 2336
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	4 cut(s)	8, 301, 315, 1233
BstV1I	GCAGC	7 cut(s)	138, 141, 258, 1444, 1710, 2191, 2322
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	3 cut(s)	371, 890, 2195
BstYI	RGATCY	3 cut(s)	371, 890, 2195
BstZ17I	GTATAC	1 cut(s)	1115
BstZI	CGGCCG	1 cut(s)	1471
BsuRI	GGCC	6 cut(s)	283, 356, 470, 1300, 1473, 2318
BtgI	CCRYGG	3 cut(s)	994, 1474, 1631
BtrI	CACGTC	1 cut(s)	1788
BtsCI	GGATG	8 cut(s)	216, 292, 612, 1036, 1132, 1246, 2345, 2347
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	972
Cac8I	GCNNGC	1 cut(s)	1727
CciI	TCATGA	1 cut(s)	1519
CfoI	GCGC	2 cut(s)	301, 315
Cfr10I	RCCGGY	2 cut(s)	401, 1708
Cfr13I	GGNCC	6 cut(s)	281, 468, 469, 611, 939, 1664
Cfr9I	CCCGGG	1 cut(s)	278
CseI	GACGC	3 cut(s)	14, 55, 1382
Csp6I	GTAC	5 cut(s)	708, 1542, 1781, 1986, 2352
CspAI	ACCGGT	1 cut(s)	1708
CviQI	GTAC	5 cut(s)	708, 1542, 1781, 1986, 2352
DdeI	CTNAG	5 cut(s)	104, 493, 1929, 1995, 2214
DpnI	GATC	5 cut(s)	373, 892, 1068, 1840, 2197
DpnII	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
EaeI	YGGCCR	2 cut(s)	1298, 1471
EagI	CGGCCG	1 cut(s)	1471
Eam1104I	CTCTTC	5 cut(s)	188, 252, 303, 1103, 2307
EarI	CTCTTC	5 cut(s)	188, 252, 303, 1103, 2307
EciI	GGCGGA	2 cut(s)	183, 2150
Ecl136II	GAGCTC	2 cut(s)	25, 490
EclXI	CGGCCG	1 cut(s)	1471
Eco130I	CCWWGG	2 cut(s)	472, 994
Eco24I	GRGCYC	4 cut(s)	27, 245, 472, 492
Eco47I	GGWCC	3 cut(s)	611, 939, 1664
Eco52I	CGGCCG	1 cut(s)	1471
Eco53kI	GAGCTC	2 cut(s)	25, 490
Eco57I	CTGAAG	2 cut(s)	1854, 2138
Eco72I	CACGTG	1 cut(s)	2015
Eco88I	CYCGRG	1 cut(s)	278
EcoICRI	GAGCTC	2 cut(s)	25, 490
EcoNI	CCTNNNNNAGG	1 cut(s)	1025
EcoO109I	RGGNCCY	2 cut(s)	469, 1664
EcoRII	CCWGG	2 cut(s)	27, 1306
EcoT14I	CCWWGG	2 cut(s)	472, 994
EcoT22I	ATGCAT	1 cut(s)	2347
EcoT38I	GRGCYC	4 cut(s)	27, 245, 472, 492
ErhI	CCWWGG	2 cut(s)	472, 994
Esp3I	CGTCTC	1 cut(s)	1095
FalI	AAGNNNNNCTT	2 cut(s)	951, 983
FaqI	GGGAC	3 cut(s)	925, 1264, 1937
FauI	CCCGC	2 cut(s)	308, 1226
FauNDI	CATATG	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	1114
FokI	GGATG	8 cut(s)	223, 299, 619, 1043, 1119, 1253, 2332, 2354
FriOI	GRGCYC	4 cut(s)	27, 245, 472, 492
FspBI	CTAG	1 cut(s)	750
GlaI	GCGC	2 cut(s)	300, 314
GsaI	CCCAGC	1 cut(s)	1285
GsuI	CTGGAG	3 cut(s)	1067, 1583, 1618
HaeIII	GGCC	6 cut(s)	283, 356, 470, 1300, 1473, 2318
HgaI	GACGC	3 cut(s)	14, 55, 1382
HhaI	GCGC	2 cut(s)	301, 315
Hin1I	GRCGYC	1 cut(s)	66
Hin6I	GCGC	2 cut(s)	299, 313
HinP1I	GCGC	2 cut(s)	299, 313
HindIII	AAGCTT	2 cut(s)	33, 1740
HphI	GGTGA	7 cut(s)	25, 331, 419, 1345, 1857, 1969, 2084
Hpy166II	GTNNAC	5 cut(s)	427, 1115, 1783, 2030, 2114
Hpy188I	TCNGA	6 cut(s)	139, 145, 221, 1792, 1855, 2287
Hpy188III	TCNNGA	5 cut(s)	614, 1100, 1520, 1941, 2111
Hpy8I	GTNNAC	5 cut(s)	427, 1115, 1783, 2030, 2114
Hpy99I	CGWCG	3 cut(s)	71, 149, 2304
HpyAV	CCTTC	9 cut(s)	297, 346, 362, 1031, 1231, 1363, 1829, 1878, 2134
HpyCH4III	ACNGT	3 cut(s)	122, 1549, 1985
HpyCH4IV	ACGT	2 cut(s)	1787, 2014
HpyF10VI	GCNNNNNNNGC	9 cut(s)	114, 123, 280, 296, 340, 476, 1925, 2156, 2176
HpyF3I	CTNAG	5 cut(s)	104, 493, 1929, 1995, 2214
HpySE526I	ACGT	2 cut(s)	1787, 2014
Hsp92I	GRCGYC	1 cut(s)	66
HspAI	GCGC	2 cut(s)	299, 313
Kzo9I	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
LguI	GCTCTTC	1 cut(s)	303
Lsp1109I	GCAGC	7 cut(s)	138, 141, 258, 1444, 1710, 2191, 2322
LweI	GCATC	4 cut(s)	277, 612, 2332, 2354
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	2 cut(s)	1787, 2014
MaeIII	GTNAC	7 cut(s)	1288, 1321, 1351, 1466, 1882, 1957, 2202
MalI	GATC	5 cut(s)	373, 892, 1068, 1840, 2197
MboI	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
MfeI	CAATTG	2 cut(s)	900, 1606
MflI	RGATCY	3 cut(s)	371, 890, 2195
MhlI	GDGCHC	7 cut(s)	27, 110, 245, 472, 492, 818, 1251
MlyI	GAGTC	5 cut(s)	128, 134, 225, 334, 1954
MmeI	TCCRAC	6 cut(s)	71, 162, 168, 183, 199, 2109
Mph1103I	ATGCAT	1 cut(s)	2347
MseI	TTAA	9 cut(s)	339, 537, 699, 887, 1154, 1404, 1431, 1574, 1713
MslI	CAYNNNNRTG	4 cut(s)	447, 1389, 1770, 1776
MspA1I	CMGCKG	1 cut(s)	1045
MspR9I	CCNGG	8 cut(s)	29, 279, 280, 358, 422, 1308, 1955, 2404
MunI	CAATTG	2 cut(s)	900, 1606
Mva1269I	GAATGC	3 cut(s)	442, 454, 1459
MvaI	CCWGG	2 cut(s)	29, 1308
MvnI	CGCG	4 cut(s)	8, 301, 315, 1233
MwoI	GCNNNNNNNGC	9 cut(s)	114, 123, 280, 296, 340, 476, 1925, 2156, 2176
NciI	CCSGG	6 cut(s)	279, 280, 358, 422, 1955, 2404
NcoI	CCATGG	1 cut(s)	994
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
NlaIV	GGNNCC	6 cut(s)	470, 612, 941, 1000, 1665, 2023
NmeAIII	GCCGAG	1 cut(s)	511
NmuCI	GTSAC	4 cut(s)	1288, 1351, 1466, 1957
NsiI	ATGCAT	1 cut(s)	2347
NspI	RCATGY	2 cut(s)	637, 1775
NspV	TTCGAA	2 cut(s)	446, 1219
PagI	TCATGA	1 cut(s)	1519
PciSI	GCTCTTC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	452, 507
PctI	GAATGC	3 cut(s)	442, 454, 1459
PfeI	GAWTC	8 cut(s)	89, 149, 392, 1204, 1331, 1420, 2075, 2107
PflFI	GACNNNGTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	1307
PfoI	TCCNGGA	2 cut(s)	27, 2402
PinAI	ACCGGT	1 cut(s)	1708
PleI	GAGTC	5 cut(s)	128, 134, 224, 333, 1954
PmaCI	CACGTG	1 cut(s)	2015
PmlI	CACGTG	1 cut(s)	2015
PpsI	GAGTC	5 cut(s)	128, 134, 224, 333, 1954
Ppu21I	YACGTR	1 cut(s)	2015
PpuMI	RGGWCCY	1 cut(s)	1664
PshAI	GACNNNNGTC	1 cut(s)	1608
PshBI	ATTAAT	1 cut(s)	1574
Psp124BI	GAGCTC	2 cut(s)	27, 492
Psp5II	RGGWCCY	1 cut(s)	1664
Psp6I	CCWGG	2 cut(s)	27, 1306
PspCI	CACGTG	1 cut(s)	2015
PspFI	CCCAGC	1 cut(s)	1281
PspGI	CCWGG	2 cut(s)	27, 1306
PspN4I	GGNNCC	6 cut(s)	470, 612, 941, 1000, 1665, 2023
PspOMI	GGGCCC	1 cut(s)	468
PspPI	GGNCC	6 cut(s)	281, 468, 469, 611, 939, 1664
PspPPI	RGGWCCY	1 cut(s)	1664
PstI	CTGCAG	3 cut(s)	1462, 1654, 2340
PsuI	RGATCY	3 cut(s)	371, 890, 2195
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	1045
RsaI	GTAC	5 cut(s)	709, 1543, 1782, 1987, 2353
RsaNI	GTAC	5 cut(s)	708, 1542, 1781, 1986, 2352
RseI	CAYNNNNRTG	4 cut(s)	447, 1389, 1770, 1776
SacI	GAGCTC	2 cut(s)	27, 492
SapI	GCTCTTC	1 cut(s)	303
SaqAI	TTAA	9 cut(s)	339, 537, 699, 887, 1154, 1404, 1431, 1574, 1713
Sau3AI	GATC	5 cut(s)	371, 890, 1066, 1838, 2195
Sau96I	GGNCC	6 cut(s)	281, 468, 469, 611, 939, 1664
SchI	GAGTC	5 cut(s)	128, 134, 225, 334, 1954
ScrFI	CCNGG	8 cut(s)	29, 279, 280, 358, 422, 1308, 1955, 2404
SduI	GDGCHC	7 cut(s)	27, 110, 245, 472, 492, 818, 1251
SfaNI	GCATC	4 cut(s)	277, 612, 2332, 2354
SfcI	CTRYAG	3 cut(s)	1458, 1650, 2336
SfuI	TTCGAA	2 cut(s)	446, 1219
SinI	GGWCC	3 cut(s)	611, 939, 1664
SmaI	CCCGGG	1 cut(s)	280
SmiMI	CAYNNNNRTG	4 cut(s)	447, 1389, 1770, 1776
SspI	AATATT	1 cut(s)	1753
SspMI	CTAG	1 cut(s)	750
SstI	GAGCTC	2 cut(s)	27, 492
StyD4I	CCNGG	8 cut(s)	27, 277, 278, 356, 420, 1306, 1953, 2402
StyI	CCWWGG	2 cut(s)	472, 994
TaaI	ACNGT	3 cut(s)	122, 1549, 1985
TaiI	ACGT	2 cut(s)	1790, 2017
TaqI	TCGA	5 cut(s)	446, 1099, 1219, 1423, 2388
TaqII	GACCGA	1 cut(s)	318
TatI	WGTACW	1 cut(s)	1780
TauI	GCSGC	6 cut(s)	66, 85, 165, 168, 271, 293
TfiI	GAWTC	8 cut(s)	89, 149, 392, 1204, 1331, 1420, 2075, 2107
Tru1I	TTAA	9 cut(s)	339, 537, 699, 887, 1154, 1404, 1431, 1574, 1713
Tru9I	TTAA	9 cut(s)	339, 537, 699, 887, 1154, 1404, 1431, 1574, 1713
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	4 cut(s)	1288, 1351, 1466, 1957
TseI	GCWGC	7 cut(s)	126, 129, 271, 1457, 1698, 2179, 2335
Tsp45I	GTSAC	4 cut(s)	1288, 1351, 1466, 1957
TspDTI	ATGAA	8 cut(s)	381, 959, 969, 1001, 1050, 1689, 1962, 2325
TspGWI	ACGGA	3 cut(s)	82, 1648, 1721
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	1307
VpaK11BI	GGWCC	3 cut(s)	611, 939, 1664
VspI	ATTAAT	1 cut(s)	1574
XagI	CCTNNNNNAGG	1 cut(s)	1025
XapI	RAATTY	1 cut(s)	916
XceI	RCATGY	2 cut(s)	637, 1775
XmaI	CCCGGG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	1114
XspI	CTAG	1 cut(s)	750
Zsp2I	ATGCAT	1 cut(s)	2347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.