Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Forward (+)

13283526 .. 13285323

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTAAGGATGAAGCCAAGGGATTGCTGAAAAGTGAAGAGCTCTATAAATATATACTGGAGACTAGTGTGTACCCACGCGAGCCAGAGGTTCTCAGGGAGCTTAGGAACATTACTCATAACCACCCTCAAGCTGGTATGGCTACTGCACCAGACGCTGGCCAGTTGATGGGGATGCTGCTGAATCTGGTAAATGCAAGAAAGACTATCGAGGTTGGGGTTTTCACTGGATACTCTCTTCTCCTCACTGCTCTTACGCTACCAGAAGATGGCAAGGTTATCGCCATTGACATGAATAGAGACTCGTATGAAATAGGATTGCCGGTTATAAAGAAAGCTGGTGTTGAACACAAAATTGATTTCAAAGAGTCTGAAGCTCTTCCAGCCCTCGACGAGCTTTTAAACAATAAAGTGAATGAGGGTGGATTCGACTTCGCATTTGTGGATGCAGACAAGCTGAATTATTGGAACTATCATGAGAGGCTTATTAGATTGATCAAGGTTGGTGGGATCATAGTGTATGATAACACTCTCTGGGGAGGATCAGTTGCTGAACCGGACTCGTCCACGCCCGAGTGGAGGATAGAAGTCAAGAAAGCAACCCTCGAGCTGAACAAGAAACTCTCGGCTGATCAGCGTGTGCAGATCTCGCAAGCTGCGCTTGGCGATGGTATCACTATTTGCAGGAGGTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

232

Amino Acids

25.95

Weight (kDa)

5.37

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	21 - 231	9.3e-80	O-methyltransferase
Methyltransf_24	PF13578	70 - 176	4.6e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AccB7I	CCANNNNNTGG	3 cut(s)	158, 169, 269
AccII	CGCG	1 cut(s)	81
AclWI	GGATC	2 cut(s)	518, 550
AcoI	YGGCCR	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	74
AfiI	CCNNNNNNNGG	5 cut(s)	134, 158, 169, 269, 579
AgsI	TTSAA	2 cut(s)	347, 364
AhlI	ACTAGT	1 cut(s)	65
AluBI	AGCT	9 cut(s)	43, 103, 134, 338, 377, 397, 457, 610, 656
AluI	AGCT	9 cut(s)	43, 103, 134, 338, 377, 397, 457, 610, 656
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	56, 294
AlwI	GGATC	2 cut(s)	518, 550
AlwNI	CAGNNNCTG	2 cut(s)	158, 551
Ama87I	CYCGRG	2 cut(s)	572, 605
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	178, 656
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	661
AvaI	CYCGRG	2 cut(s)	572, 605
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	165, 643
BccI	CCATC	3 cut(s)	163, 263, 662
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciVI	GTATCC	1 cut(s)	224
BclI	TGATCA	2 cut(s)	495, 631
BcoDI	GTCTC	2 cut(s)	56, 294
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	2 cut(s)	179, 657
BlsI	GCNGC	2 cut(s)	180, 658
BmeT110I	CYCGRG	2 cut(s)	572, 605
BmsI	GCATC	2 cut(s)	165, 436
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	2 cut(s)	6, 104
BpuEI	CTTGAG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 158, 169, 269, 579
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	3 cut(s)	63, 163, 232
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	3 cut(s)	16, 180, 451
BseLI	CCNNNNNNNGG	5 cut(s)	134, 158, 169, 269, 579
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	3 cut(s)	63, 163, 232
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	165, 643
BsgI	GTGCAG	2 cut(s)	132, 662
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	572, 605
BsiSI	CCGG	2 cut(s)	323, 557
BslI	CCNNNNNNNGG	5 cut(s)	134, 158, 169, 269, 579
BsmAI	GTCTC	2 cut(s)	56, 294
BsnI	GGCC	1 cut(s)	162
BsoBI	CYCGRG	2 cut(s)	572, 605
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	495, 510, 542, 631, 645
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	475
BspPI	GGATC	2 cut(s)	518, 550
BspQI	GCTCTTC	2 cut(s)	33, 384
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	3 cut(s)	63, 163, 232
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	5 cut(s)	495, 510, 542, 631, 645
BssT1I	CCWWGG	1 cut(s)	18
Bst6I	CTCTTC	3 cut(s)	33, 243, 384
BstC8I	GCNNGC	3 cut(s)	83, 160, 654
BstDEI	CTNAG	3 cut(s)	6, 95, 104
BstF5I	GGATG	3 cut(s)	16, 180, 451
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	5 cut(s)	498, 513, 545, 634, 648
BstMAI	GTCTC	2 cut(s)	56, 294
BstMBI	GATC	5 cut(s)	495, 510, 542, 631, 645
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 155, 383, 649, 658
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	165, 643
BstX2I	RGATCY	1 cut(s)	645
BstYI	RGATCY	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	3 cut(s)	16, 180, 451
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	225, 246
Cac8I	GCNNGC	3 cut(s)	83, 160, 654
CaiI	CAGNNNCTG	2 cut(s)	158, 551
CciI	TCATGA	1 cut(s)	475
CfoI	GCGC	1 cut(s)	661
Cfr10I	RCCGGY	1 cut(s)	322
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	73
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	2 cut(s)	292, 476
CviQI	GTAC	1 cut(s)	73
DdeI	CTNAG	3 cut(s)	6, 95, 104
DpnI	GATC	5 cut(s)	497, 512, 544, 633, 647
DpnII	GATC	5 cut(s)	495, 510, 542, 631, 645
DraI	TTTAAA	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	3 cut(s)	33, 243, 384
EarI	CTCTTC	3 cut(s)	33, 243, 384
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	572, 605
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	2 cut(s)	295, 479
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FatI	CATG	2 cut(s)	291, 475
FbaI	TGATCA	2 cut(s)	495, 631
Fnu4HI	GCNGC	2 cut(s)	179, 657
FokI	GGATG	3 cut(s)	23, 187, 458
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	179, 657
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	2 cut(s)	179, 657
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	2 cut(s)	323, 557
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	2 cut(s)	295, 479
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HinfI	GANTC	5 cut(s)	184, 302, 368, 426, 560
HpaII	CCGG	2 cut(s)	323, 557
Hpy166II	GTNNAC	2 cut(s)	73, 567
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	2 cut(s)	476, 592
Hpy8I	GTNNAC	2 cut(s)	73, 567
Hpy99I	CGWCG	1 cut(s)	395
HpyCH4V	TGCA	5 cut(s)	149, 197, 449, 643, 684
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 155, 383, 649, 658
HpyF3I	CTNAG	3 cut(s)	6, 95, 104
Hsp92II	CATG	2 cut(s)	295, 479
HspAI	GCGC	1 cut(s)	659
Ksp22I	TGATCA	2 cut(s)	495, 631
Kzo9I	GATC	5 cut(s)	495, 510, 542, 631, 645
LguI	GCTCTTC	2 cut(s)	33, 384
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	165, 643
LweI	GCATC	2 cut(s)	165, 436
MaeI	CTAG	1 cut(s)	66
MalI	GATC	5 cut(s)	497, 512, 544, 633, 647
MboI	GATC	5 cut(s)	495, 510, 542, 631, 645
MboII	GAAGA	4 cut(s)	50, 230, 278, 371
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	2 cut(s)	354, 460
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	3 cut(s)	296, 377, 554
Mox20I	TGGCCA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	401
MslI	CAYNNNNRTG	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	2 cut(s)	323, 557
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	5 cut(s)	140, 155, 383, 649, 658
NdeII	GATC	5 cut(s)	495, 510, 542, 631, 645
NlaIII	CATG	2 cut(s)	295, 479
NmeAIII	GCCGAG	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	475
PciSI	GCTCTTC	2 cut(s)	33, 384
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	184, 426
PflMI	CCANNNNNTGG	3 cut(s)	158, 169, 269
PkrI	GCNGC	2 cut(s)	180, 658
PleI	GAGTC	3 cut(s)	296, 376, 554
PpsI	GAGTC	3 cut(s)	296, 376, 554
PsiI	TTATAA	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	45
PspXI	VCTCGAGB	1 cut(s)	605
PstNI	CAGNNNCTG	2 cut(s)	158, 551
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	290
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	2 cut(s)	33, 384
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	2 cut(s)	179, 657
Sau3AI	GATC	5 cut(s)	495, 510, 542, 631, 645
SchI	GAGTC	3 cut(s)	296, 377, 554
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	165, 436
Sfr274I	CTCGAG	1 cut(s)	605
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	129, 605
SmoI	CTYRAG	2 cut(s)	129, 605
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	2 cut(s)	354, 460
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	18
TaqI	TCGA	4 cut(s)	210, 390, 429, 606
TasI	AATT	2 cut(s)	354, 460
TfiI	GAWTC	2 cut(s)	184, 426
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	2 cut(s)	232, 253
TseI	GCWGC	2 cut(s)	178, 656
TspDTI	ATGAA	3 cut(s)	27, 308, 324
TspRI	CASTG	2 cut(s)	232, 253
Van91I	CCANNNNNTGG	3 cut(s)	158, 169, 269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.