Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

3886944 .. 3888065

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGCACGGCGTTAAAAAGGACGGGAATCTGGTGAAGAAGGGACTGCTGCAGAGTGACGAGTTATATGAGTATATCTTGGAGACCAGTATATATCCACGTGAACCGGAGCCACTCAAGGAGCTAAGAGCTGCCACTGCCAGCCACCCGAGGGCTGGGATGGCTACTGCACCAGATGCAGGTCAGTTAATGGCCATGCTGTTGAAGCTCATAGATGCAAAGAAAACGATTGAAGTTGGTGTTTTCACCGGATACTCTCTCCTCCTTACTGCTCTTACAATTCCTGACGATGGCAAGATTGTAGCCATAGATGTGAATCGTGAGACATATGAGCAAATAGGGCTTCCAATCATAAAGAAAGCCGGTGTTGAGCACAAAATCGACTTCATTGAATCCCAGGCCCTACCAGTTCTTGATAAGCTACTAGAAAATCATGAAAATGAAGGCAGTTTCAACTTTGCTTTCTTTGATGCCGACAAGGTCAACTACCGGAACTACCATGAGAGGTTAATGAAGCTGTTGAAGGTGGGTGATTTAGTTGTCTATGATAACACGCTCTGGGGAGGAACGGTTGTAATGCCTGATGAGTTGACTCCAGAGCGCAGGAAACCAGGCAGAGAGGCGACTATCGAGTTTAACAAGTTACTTGCAGCCGATCGCTCGTGTCCAGATTTCGCATGCTCCTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

231

Amino Acids

25.71

Weight (kDa)

5.24

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	28 - 220	6.5e-66	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	101
AfiI	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
AgsI	TTSAA	5 cut(s)	205, 233, 392, 454, 523
AjnI	CCWGG	2 cut(s)	396, 610
AluBI	AGCT	5 cut(s)	124, 131, 208, 421, 517
AluI	AGCT	5 cut(s)	124, 131, 208, 421, 517
Alw21I	GWGCWC	2 cut(s)	9, 375
Alw26I	GTCTC	2 cut(s)	77, 317
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	2 cut(s)	192, 399
ApeKI	GCWGC	3 cut(s)	49, 131, 650
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	46, 238, 542
AvaI	CYCGRG	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	194
BauI	CACGAG	1 cut(s)	661
BbrPI	CACGTG	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	9, 375
BbvI	GCAGC	3 cut(s)	36, 118, 662
BccI	CCATC	2 cut(s)	154, 284
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	398, 612
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	77, 317
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	50, 132, 651
BlsI	GCNGC	3 cut(s)	51, 133, 652
Bme1390I	CCNGG	2 cut(s)	398, 612
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	398, 612
BmsI	GCATC	3 cut(s)	166, 205, 460
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	149, 396
BsaWI	WCCGGW	3 cut(s)	106, 248, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	87, 407
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	398, 612
BseDI	CCNNGG	2 cut(s)	149, 396
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
BseNI	ACTGG	2 cut(s)	87, 407
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	36, 118, 662
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	2 cut(s)	194, 401
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	9, 375
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	107, 249, 363, 490
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
BsmAI	GTCTC	2 cut(s)	77, 317
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	194, 401
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	9, 375
Bsp143I	GATC	1 cut(s)	655
BspANI	GGCC	2 cut(s)	194, 401
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	87, 407
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	149, 396
BssMI	GATC	1 cut(s)	655
BssSI	CACGAG	1 cut(s)	661
Bst2BI	CACGAG	1 cut(s)	661
Bst2UI	CCWGG	2 cut(s)	398, 612
Bst4CI	ACNGT	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	142, 679
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	2 cut(s)	77, 317
BstMBI	GATC	1 cut(s)	655
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 161, 176, 205, 340
BstNI	CCWGG	2 cut(s)	398, 612
BstNSI	RCATGY	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	396, 610
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	36, 118, 662
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	194, 401
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	142, 679
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	400
CviAII	CATG	4 cut(s)	196, 434, 500, 678
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
EaeI	YGGCCR	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	396, 610
FaeI	CATG	4 cut(s)	199, 437, 503, 681
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	195, 433, 499, 677
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	50, 132, 651
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	3 cut(s)	50, 132, 651
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	50, 132, 651
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	194, 401
HapII	CCGG	4 cut(s)	107, 249, 363, 490
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	4 cut(s)	199, 437, 503, 681
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	2 cut(s)	484, 591
HindII	GTYRAC	2 cut(s)	484, 591
HinfI	GANTC	4 cut(s)	28, 316, 392, 592
HpaII	CCGG	4 cut(s)	107, 249, 363, 490
HphI	GGTGA	3 cut(s)	46, 238, 542
Hpy166II	GTNNAC	3 cut(s)	104, 484, 591
Hpy188III	TCNNGA	6 cut(s)	284, 320, 413, 434, 596, 668
Hpy8I	GTNNAC	3 cut(s)	104, 484, 591
HpyAV	CCTTC	3 cut(s)	34, 437, 517
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	5 cut(s)	52, 170, 179, 218, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 161, 176, 205, 340
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	4 cut(s)	199, 437, 503, 681
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	1 cut(s)	655
LmnI	GCTCC	4 cut(s)	4, 109, 121, 686
Lsp1109I	GCAGC	3 cut(s)	36, 118, 662
LweI	GCATC	3 cut(s)	166, 205, 460
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	56, 642
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	9, 375
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	586
MnlI	CCTC	5 cut(s)	144, 272, 498, 557, 613
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	4 cut(s)	15, 188, 509, 636
MslI	CAYNNNNRTG	2 cut(s)	311, 438
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	4 cut(s)	107, 249, 363, 490
MspR9I	CCNGG	2 cut(s)	398, 612
MvaI	CCWGG	2 cut(s)	398, 612
MwoI	GCNNNNNNNGC	5 cut(s)	137, 161, 176, 205, 340
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	4 cut(s)	199, 437, 503, 681
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	681
PaeI	GCATGC	1 cut(s)	681
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	3 cut(s)	28, 316, 392
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	51, 133, 652
Ple19I	CGATCG	1 cut(s)	658
PleI	GAGTC	1 cut(s)	586
PmaCI	CACGTG	1 cut(s)	101
PmlI	CACGTG	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	396, 610
PspCI	CACGTG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	396, 610
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	54
PsyI	GACNNNGTC	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	658
RseI	CAYNNNNRTG	2 cut(s)	311, 438
SaqAI	TTAA	4 cut(s)	15, 188, 509, 636
SatI	GCNGC	3 cut(s)	50, 132, 651
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	2 cut(s)	398, 612
SduI	GDGCHC	2 cut(s)	9, 375
SfaNI	GCATC	3 cut(s)	166, 205, 460
SfcI	CTRYAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	311, 438
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SphI	GCATGC	1 cut(s)	681
Sse9I	AATT	1 cut(s)	279
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	396, 610
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	381, 630
TasI	AATT	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	28, 316, 392
Tru1I	TTAA	4 cut(s)	15, 188, 509, 636
Tru9I	TTAA	4 cut(s)	15, 188, 509, 636
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	49, 131, 650
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	376, 450, 456, 527
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	479
XceI	RCATGY	1 cut(s)	681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.