Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197646.1

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Forward (+)

75 .. 570

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197646.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgtggcagtatatcttggagactagcttgtatccgcgtgaaccggagcctctcaaggagctgagagaggccactgccagccatcccggggctgggatgggtactgcaccagatgcaggtcagttaatgaccatgctattgaagttagtagatgcaaagaagacgattgaagttggtgtttttaccggatactctcttctcttcgctgctcttaaaattcctgaggatggcaaggcctgttactacttactagttatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

86

Amino Acids

9.48

Weight (kDa)

5.24

Isoelectric Point (pI)

24.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	107
AccII	CGCG	1 cut(s)	37
AciI	CCGC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	5 cut(s)	88, 92, 93, 116, 227
AgsI	TTSAA	2 cut(s)	142, 170
AhlI	ACTAGT	1 cut(s)	250
AluBI	AGCT	2 cut(s)	27, 61
AluI	AGCT	2 cut(s)	27, 61
Alw26I	GTCTC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	69, 234
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	216
AsuC2I	CCSGG	2 cut(s)	87, 88
AvaI	CYCGRG	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	3 cut(s)	90, 91, 221
BciVI	GTATCC	2 cut(s)	42, 182
BcnI	CCSGG	2 cut(s)	87, 88
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	2 cut(s)	24, 251
BfuAI	ACCTGC	1 cut(s)	107
BfuI	GTATCC	2 cut(s)	42, 182
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	87, 88
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	87, 88
BmsI	GCATC	2 cut(s)	103, 142
BpiI	GAAGAC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	87, 88
BsaJI	CCNNGG	2 cut(s)	86, 87
BsaWI	WCCGGW	2 cut(s)	43, 185
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 92, 93, 116, 227
Bse21I	CCTNAGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	86, 87
BseGI	GGATG	3 cut(s)	82, 102, 232
BseLI	CCNNNNNNNGG	5 cut(s)	88, 92, 93, 116, 227
BseMII	CTCAG	2 cut(s)	53, 213
BseXI	GCAGC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	71, 236
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	44, 87, 186
BslI	CCNNNNNNNGG	5 cut(s)	88, 92, 93, 116, 227
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	71, 236
BsoBI	CYCGRG	1 cut(s)	86
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	71, 236
BspCNI	CTCAG	2 cut(s)	54, 214
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	86, 87
Bst6I	CTCTTC	2 cut(s)	201, 206
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	62, 222
BstF5I	GGATG	3 cut(s)	82, 102, 232
BstFNI	CGCG	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSCI	CCNGG	2 cut(s)	85, 86
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	222
BsuI	GTATCC	2 cut(s)	42, 182
BsuRI	GGCC	2 cut(s)	71, 236
BtsCI	GGATG	3 cut(s)	82, 102, 232
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	79
Cfr9I	CCCGGG	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	7 cut(s)	27, 49, 61, 71, 81, 92, 236
CviKI_1	RGCY	7 cut(s)	27, 49, 61, 71, 81, 92, 236
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	2 cut(s)	62, 222
Eam1104I	CTCTTC	2 cut(s)	201, 206
EarI	CTCTTC	2 cut(s)	201, 206
Eco147I	AGGCCT	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	86
FaeI	CATG	1 cut(s)	136
FaiI	YATR	2 cut(s)	12, 134
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	3 cut(s)	69, 109, 239
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	24, 251
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	71, 236
HapII	CCGG	3 cut(s)	44, 87, 186
Hin1II	CATG	1 cut(s)	136
HpaII	CCGG	3 cut(s)	44, 87, 186
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	107, 116, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	62, 222
Hsp92II	CATG	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	46, 58
LpnPI	CCDG	9 cut(s)	57, 78, 91, 100, 102, 123, 199, 234, 250
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	103, 142
MaeI	CTAG	2 cut(s)	24, 251
MaeIII	GTNAC	1 cut(s)	239
MboII	GAAGA	3 cut(s)	172, 188, 193
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	3 cut(s)	60, 61, 217
MseI	TTAA	2 cut(s)	125, 213
MspI	CCGG	3 cut(s)	44, 87, 186
MspR9I	CCNGG	2 cut(s)	87, 88
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	87, 88
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	48
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	125, 213
SatI	GCNGC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	87, 88
SetI	ASST	3 cut(s)	29, 63, 121
SfaNI	GCATC	2 cut(s)	103, 142
SmaI	CCCGGG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	24, 251
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	85, 86
TasI	AATT	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	125, 213
Tru9I	TTAA	2 cut(s)	125, 213
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	206
TspMI	CCCGGG	1 cut(s)	86
TspRI	CASTG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XmaI	CCCGGG	1 cut(s)	86
XspI	CTAG	2 cut(s)	24, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.