Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Forward (+)

19458449 .. 19460610

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G214400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGCACAACCTGAAAAAGGAATCGGATCCTTCACAAAAGGGACTGCTGCAGAGTGATGAGTTATATCAGTATATCTTGGAGACTAGTGTATATCCCCGTGAACTGGAGCCTCTCAAGGAGCTAAGGGCTGCCACTGCCAGCCACCCAAGGTCTCAGATGGCTACTGCACCAGATGCAGGTCAGTTAATGACTATGCTGTTGAAGCTAGTAGATGCAAAGAAGACAATCGAAGTTGGTGTTTTCACCGGATACTCTCTTCTCCTCACTGCTCTTACAATTCCTGAGGATGGCAAGATTGTAGCGGTAGATGTGAATCGTGACGCATATGATCAAATAGGGTTGCCAATCATAGAGAAAGCTGGTGTTCAACACAAAATTGACTTCATTGAATCTGAAGCCCTACCAGTTCTTGATGAGCTACTAGAACATCATGAAAATGAAGGCAGTTTCGACTTTGCTTTTGTTGATGCCGACAAGGTGAACTATTGGAAATACCATGAGAGGCTAATGAAGCTGTTGAAGGTGGGTGGCATAGTTGTCTATGATAACACCCTCTGGGGAGGAACAGTTGTAATGCTTGAGGAATCAACTCCAGAATACATGAAACAAGGCAGACAGGCGACTATTGAGCTTAACAAGTTACTCGCAGCCGATGCTCGTGTCCAAATTTCACATGCTTCTTTGGGTGATGGGATCACAATTTGCAGGAGAATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

241

Amino Acids

26.88

Weight (kDa)

5.05

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	3 cut(s)	23, 36, 704
AcsI	RAATTY	1 cut(s)	669
AcuI	CTGAAG	1 cut(s)	417
AfiI	CCNNNNNNNGG	4 cut(s)	19, 106, 179, 290
AgsI	TTSAA	4 cut(s)	205, 371, 392, 523
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	6 cut(s)	124, 208, 362, 421, 517, 634
AluI	AGCT	6 cut(s)	124, 208, 362, 421, 517, 634
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	77, 159
AlwI	GGATC	3 cut(s)	23, 36, 704
ApeKI	GCWGC	3 cut(s)	49, 131, 650
ApoI	RAATTY	1 cut(s)	669
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AsuHPI	GGTGA	3 cut(s)	238, 493, 701
AxyI	CCTNAGG	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	36, 118, 662
BccI	CCATC	3 cut(s)	154, 284, 686
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	77, 159
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	3 cut(s)	87, 209, 425
BfmI	CTRYAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	50, 132, 651
BlsI	GCNGC	3 cut(s)	51, 133, 652
BmiI	GGNNCC	2 cut(s)	30, 111
BmsI	GCATC	4 cut(s)	166, 205, 460, 646
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	2 cut(s)	128, 579
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	101, 602
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 106, 179, 290
Bse1I	ACTGG	2 cut(s)	111, 407
Bse21I	CCTNAGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	4 cut(s)	19, 106, 179, 290
BseMII	CTCAG	2 cut(s)	170, 276
BseNI	ACTGG	2 cut(s)	111, 407
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	36, 118, 662
BsgI	GTGCAG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	4 cut(s)	19, 106, 179, 290
BsmAI	GTCTC	2 cut(s)	77, 159
BsmFI	GGGAC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	28, 331, 696
BspACI	CCGC	1 cut(s)	305
BspCNI	CTCAG	2 cut(s)	169, 277
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	30, 111
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	3 cut(s)	23, 36, 704
BspTNI	GGTCTC	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	111, 407
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	3 cut(s)	28, 331, 696
BssSI	CACGAG	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	264
BstAPI	GCANNNNNTGC	2 cut(s)	176, 656
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	125, 156, 285
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	31, 334, 699
BstMAI	GTCTC	2 cut(s)	77, 159
BstMBI	GATC	3 cut(s)	28, 331, 696
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 176, 205, 514, 656
BstNSI	RCATGY	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	36, 118, 662
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	2 cut(s)	135, 267
BtsIMutI	CAGTG	2 cut(s)	135, 267
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	433
CseI	GACGC	1 cut(s)	332
CviAII	CATG	4 cut(s)	434, 500, 604, 677
DdeI	CTNAG	3 cut(s)	125, 156, 285
DpnI	GATC	3 cut(s)	30, 333, 698
DpnII	GATC	3 cut(s)	28, 331, 696
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	4 cut(s)	437, 503, 607, 680
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	433, 499, 603, 676
FauNDI	CATATG	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	50, 132, 651
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	50, 132, 651
FspBI	CTAG	3 cut(s)	87, 209, 425
GluI	GCNGC	3 cut(s)	50, 132, 651
GsuI	CTGGAG	2 cut(s)	128, 579
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	437, 503, 607, 680
HinfI	GANTC	4 cut(s)	23, 316, 392, 587
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	238, 493, 701
Hpy166II	GTNNAC	2 cut(s)	104, 484
Hpy188I	TCNGA	3 cut(s)	28, 159, 397
Hpy188III	TCNNGA	5 cut(s)	284, 320, 413, 434, 596
Hpy8I	GTNNAC	2 cut(s)	104, 484
HpyAV	CCTTC	3 cut(s)	42, 437, 517
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	5 cut(s)	52, 170, 179, 218, 708
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 176, 205, 514, 656
HpyF3I	CTNAG	3 cut(s)	125, 156, 285
Hsp92II	CATG	4 cut(s)	437, 503, 607, 680
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	28, 331, 696
LmnI	GCTCC	3 cut(s)	4, 109, 121
Lsp1109I	GCAGC	3 cut(s)	36, 118, 662
LweI	GCATC	4 cut(s)	166, 205, 460, 646
MaeI	CTAG	3 cut(s)	87, 209, 425
MaeIII	GTNAC	2 cut(s)	320, 642
MalI	GATC	3 cut(s)	30, 333, 698
MboI	GATC	3 cut(s)	28, 331, 696
MboII	GAAGA	2 cut(s)	235, 251
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	5 cut(s)	279, 378, 669, 702, 714
MnlI	CCTC	7 cut(s)	123, 275, 280, 498, 557, 566, 577
MseI	TTAA	3 cut(s)	188, 636, 717
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	5 cut(s)	137, 176, 205, 514, 656
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	3 cut(s)	28, 331, 696
NlaIII	CATG	4 cut(s)	437, 503, 607, 680
NlaIV	GGNNCC	2 cut(s)	30, 111
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	680
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	23, 316, 392, 587
PkrI	GCNGC	3 cut(s)	51, 133, 652
PspN4I	GGNNCC	2 cut(s)	30, 111
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	188, 636, 717
SatI	GCNGC	3 cut(s)	50, 132, 651
Sau3AI	GATC	3 cut(s)	28, 331, 696
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	4 cut(s)	166, 205, 460, 646
SfcI	CTRYAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	116, 581
SmoI	CTYRAG	2 cut(s)	116, 581
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	5 cut(s)	279, 378, 669, 702, 714
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	3 cut(s)	87, 209, 425
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	231, 453
TasI	AATT	5 cut(s)	279, 378, 669, 702, 714
TfiI	GAWTC	4 cut(s)	23, 316, 392, 587
Tru1I	TTAA	3 cut(s)	188, 636, 717
Tru9I	TTAA	3 cut(s)	188, 636, 717
TscAI	CASTG	2 cut(s)	142, 274
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	3 cut(s)	49, 131, 650
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	5 cut(s)	376, 450, 456, 527, 620
TspRI	CASTG	2 cut(s)	142, 274
XagI	CCTNNNNNAGG	1 cut(s)	17
XapI	RAATTY	1 cut(s)	669
XceI	RCATGY	1 cut(s)	680
XspI	CTAG	3 cut(s)	87, 209, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.