Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

3874506 .. 3875680

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGGACAGCGCCAAAAAGGAAAGGAATCTAGAGACGAAGGGACTGCTGCAGAGTGACGAGTTATATCAGTATATCTTGGAGACTAGTGTGTATCCACACGAACCCAAGCCTCTCAGGGAGCTAAGAGCTGCCACCGCGGACCACCCGAGGGCTGGGATGGCTACTGCGCCAGATGCAGGTCAGTTAATGGCCATGCTGTTGAAGCTAGTAGATGCAAAGAAAACGATTGAAGTTGGCGTTTTCACCGGATACTCTCTCCTCCTCACTGCTCTTACAATTCCCGACGATGGCAAGATTGTAGCCATAGATGTGAATCGTGAGATGTATGAGCAAATAGGGCTTCCAATCATGAAGAAAGCTGGTGTTGAGCACAAAATCGACTTCATTGAATCCCAGGCCCTACCAGTACTTGATAAGCTACTAGAAAATCATGAAAACGAAGGAAGTTTCGACTTTGCTTTCATTGATGCTGACAAGGTCAACTACTGGAACTACCATGAGAGGTTAATGAAGCTGTTGAAGGTGGGTGGTATAGTTGTCTATGATAACACCCTCTGGGGAGGAACGGTTGTAATGCCTGATGAGTTGATTCCAGAGATCATGAAACCAGGCAAACAGGCGACAATTGAGCTTAACAAGTTACTTGCAGCCGATCCTCGTGTCCAGATTTCGCATGCTTCTTTGGGTGATGGGATCGATCGTTCTTGGTACAATTTGTCGTCGACTTTACTGATTCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

249

Amino Acids

27.68

Weight (kDa)

5.04

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	725
AccII	CGCG	1 cut(s)	140
AciI	CCGC	2 cut(s)	138, 140
AclWI	GGATC	2 cut(s)	650, 704
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	2 cut(s)	411, 713
AfiI	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
AgsI	TTSAA	4 cut(s)	205, 233, 392, 523
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	396, 610
AloI	GAACNNNNNNTCC	2 cut(s)	688, 720
AluBI	AGCT	7 cut(s)	124, 131, 208, 362, 421, 517, 634
AluI	AGCT	7 cut(s)	124, 131, 208, 362, 421, 517, 634
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	2 cut(s)	29, 77
AlwI	GGATC	2 cut(s)	650, 704
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	2 cut(s)	192, 399
ApeKI	GCWGC	3 cut(s)	49, 131, 650
AspLEI	GCGC	2 cut(s)	14, 172
AspS9I	GGNCC	2 cut(s)	142, 400
AsuHPI	GGTGA	2 cut(s)	238, 701
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	194
BauI	CACGAG	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	36, 118, 662
BccI	CCATC	3 cut(s)	154, 284, 686
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	398, 612
BciVI	GTATCC	2 cut(s)	105, 245
BcoDI	GTCTC	2 cut(s)	29, 77
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	4 cut(s)	32, 87, 209, 425
BfmI	CTRYAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	2 cut(s)	105, 245
BisI	GCNGC	3 cut(s)	50, 132, 651
BlsI	GCNGC	3 cut(s)	51, 133, 652
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	398, 612
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	142, 400
BmrFI	CCNGG	2 cut(s)	398, 612
BmsI	GCATC	3 cut(s)	166, 205, 460
Bsa29I	ATCGAT	1 cut(s)	699
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	138, 149, 396
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
Bse1I	ACTGG	2 cut(s)	407, 494
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	398, 612
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	3 cut(s)	138, 149, 396
BseGI	GGATG	1 cut(s)	165
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	2 cut(s)	407, 494
BseRI	GAGGAG	2 cut(s)	251, 254
BseXI	GCAGC	3 cut(s)	36, 118, 662
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	703
BshFI	GGCC	2 cut(s)	194, 401
BshVI	ATCGAT	1 cut(s)	699
BsiEI	CGRYCG	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	4 cut(s)	151, 155, 179, 290
BsmAI	GTCTC	2 cut(s)	29, 77
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	194, 401
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	600, 655, 696, 700
BspACI	CCGC	2 cut(s)	138, 140
BspANI	GGCC	2 cut(s)	194, 401
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	3 cut(s)	351, 433, 603
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	650, 704
BsrI	ACTGG	2 cut(s)	407, 494
BssECI	CCNNGG	3 cut(s)	138, 149, 396
BssMI	GATC	4 cut(s)	600, 655, 696, 700
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	2 cut(s)	398, 612
Bst4CI	ACNGT	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	2 cut(s)	116, 125
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 172
BstKTI	GATC	4 cut(s)	603, 658, 699, 703
BstMAI	GTCTC	2 cut(s)	29, 77
BstMBI	GATC	4 cut(s)	600, 655, 696, 700
BstMCI	CGRYCG	1 cut(s)	703
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 161, 176, 205, 340
BstNI	CCWGG	2 cut(s)	398, 612
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	2 cut(s)	396, 610
BstSFI	CTRYAG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	36, 118, 662
Bsu15I	ATCGAT	1 cut(s)	699
BsuI	GTATCC	2 cut(s)	105, 245
BsuRI	GGCC	2 cut(s)	194, 401
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	678
CciI	TCATGA	3 cut(s)	351, 433, 603
CfoI	GCGC	2 cut(s)	14, 172
Cfr13I	GGNCC	2 cut(s)	142, 400
Cfr42I	CCGCGG	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	410, 712
CviAII	CATG	6 cut(s)	196, 352, 434, 500, 604, 677
CviQI	GTAC	2 cut(s)	410, 712
DdeI	CTNAG	2 cut(s)	116, 125
DpnI	GATC	4 cut(s)	602, 657, 698, 702
DpnII	GATC	4 cut(s)	600, 655, 696, 700
EaeI	YGGCCR	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	396, 610
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	6 cut(s)	199, 355, 437, 503, 607, 680
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	6 cut(s)	195, 351, 433, 499, 603, 676
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	3 cut(s)	50, 132, 651
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	3 cut(s)	50, 132, 651
FspBI	CTAG	4 cut(s)	32, 87, 209, 425
GlaI	GCGC	2 cut(s)	13, 171
GluI	GCNGC	3 cut(s)	50, 132, 651
GsaI	CCCAGC	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	194, 401
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	2 cut(s)	14, 172
Hin1II	CATG	6 cut(s)	199, 355, 437, 503, 607, 680
Hin6I	GCGC	2 cut(s)	12, 170
HinP1I	GCGC	2 cut(s)	12, 170
HincII	GTYRAC	2 cut(s)	484, 726
HindII	GTYRAC	2 cut(s)	484, 726
HinfI	GANTC	5 cut(s)	28, 316, 392, 592, 736
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	238, 701
Hpy166II	GTNNAC	2 cut(s)	484, 726
Hpy188III	TCNNGA	8 cut(s)	32, 284, 320, 352, 434, 596, 604, 667
Hpy8I	GTNNAC	2 cut(s)	484, 726
Hpy99I	CGWCG	2 cut(s)	290, 727
HpyAV	CCTTC	3 cut(s)	34, 437, 517
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	4 cut(s)	52, 179, 218, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 161, 176, 205, 340
HpyF3I	CTNAG	2 cut(s)	116, 125
Hsp92II	CATG	6 cut(s)	199, 355, 437, 503, 607, 680
HspAI	GCGC	2 cut(s)	12, 170
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	600, 655, 696, 700
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	3 cut(s)	36, 118, 662
LweI	GCATC	3 cut(s)	166, 205, 460
MaeI	CTAG	4 cut(s)	32, 87, 209, 425
MaeIII	GTNAC	2 cut(s)	56, 642
MalI	GATC	4 cut(s)	602, 657, 698, 702
MboI	GATC	4 cut(s)	600, 655, 696, 700
MboII	GAAGA	1 cut(s)	367
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	1 cut(s)	375
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	279, 627, 715
MluNI	TGGCCA	1 cut(s)	194
MnlI	CCTC	8 cut(s)	123, 144, 272, 275, 498, 557, 566, 669
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	188, 509, 636
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	398, 612
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	2 cut(s)	398, 612
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	5 cut(s)	137, 161, 176, 205, 340
NdeII	GATC	4 cut(s)	600, 655, 696, 700
NlaIII	CATG	6 cut(s)	199, 355, 437, 503, 607, 680
NmuCI	GTSAC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	680
PagI	TCATGA	3 cut(s)	351, 433, 603
PfeI	GAWTC	5 cut(s)	28, 316, 392, 592, 736
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	51, 133, 652
Ple19I	CGATCG	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	396, 610
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	396, 610
PspPI	GGNCC	2 cut(s)	142, 400
PstI	CTGCAG	1 cut(s)	54
PsyI	GACNNNGTC	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	703
RsaI	GTAC	2 cut(s)	411, 713
RsaNI	GTAC	2 cut(s)	410, 712
RseI	CAYNNNNRTG	1 cut(s)	311
SacII	CCGCGG	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	724
SaqAI	TTAA	3 cut(s)	188, 509, 636
SatI	GCNGC	3 cut(s)	50, 132, 651
Sau3AI	GATC	4 cut(s)	600, 655, 696, 700
Sau96I	GGNCC	2 cut(s)	142, 400
ScaI	AGTACT	1 cut(s)	411
ScrFI	CCNGG	2 cut(s)	398, 612
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	166, 205, 460
SfcI	CTRYAG	1 cut(s)	50
Sfr303I	CCGCGG	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	86
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	3 cut(s)	279, 627, 715
SsiI	CCGC	2 cut(s)	138, 140
SspMI	CTAG	4 cut(s)	32, 87, 209, 425
StyD4I	CCNGG	2 cut(s)	396, 610
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	4 cut(s)	381, 453, 699, 725
TasI	AATT	3 cut(s)	279, 627, 715
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	5 cut(s)	28, 316, 392, 592, 736
Tru1I	TTAA	3 cut(s)	188, 509, 636
Tru9I	TTAA	3 cut(s)	188, 509, 636
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	49, 131, 650
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	6 cut(s)	368, 376, 450, 454, 527, 620
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	725
XspI	CTAG	4 cut(s)	32, 87, 209, 425
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.