Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

6234887 .. 6236713

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGCAGAACAAGAAAAAGGTATCGAAGGGACTATTGCAGAGTGATGACTTGTATCAGTATATCTTGGAGACTAGCGTGTATCCGCGTGAACCGGAGCCTCTCAAGGAGCTGAGAGAGGCCACTGCCAGCCACCCCGAGGCTGGGATGGCTACTGCACCAGATGCAGGTCAGTTAATGACCATGCTATTGAAGTTAGTAGATGCAAAGAAGACGATTGAAGTAGGAGTTTTTACCGGATACTCTCTTCTCCTCACTGCTCTTACAACTCCTGAGGATGGCAAGATTGTCGCCATAGATGTAGATCGTGAGCCATATGATCAAATAGGATTTCCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACCTCATTGAATCTGAGGCCCTGCCAGTTCTTGATAAGCTATTGGAACAACATGAAAATGAAGGAAGTTTTGACTTTGCTTTTGTCGATGCGGACAAGGTTAACTACTGGAATTACCATGAGAGACTAATGAAACTGCTGAAGGTGGGAGGTATAGCTGTGTATGATAACACTCTTTGGGGAGGGACAGTTGTAATGCCTGTTGAGTCGACTCCGGAATGGAAGAAACCAAGCAGACAGTCTATTATGGAGCTCAATAAGTTGCTCGCTGCTGATACTCGTGTCCAAATTTCGCATGCTGCTTTGGGTGATGGGATCACAGTTTGTAGGCGACTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

236

Amino Acids

26.4

Weight (kDa)

5.14

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	3.2e-75	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	6.9e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	578
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	583
AciI	CCGC	2 cut(s)	86, 461
AclWI	GGATC	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
AgsI	TTSAA	3 cut(s)	193, 221, 380
AluBI	AGCT	5 cut(s)	112, 350, 409, 527, 622
AluI	AGCT	5 cut(s)	112, 350, 409, 527, 622
Alw21I	GWGCWC	2 cut(s)	363, 624
Alw26I	GTCTC	2 cut(s)	65, 487
AlwI	GGATC	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	583
AoxI	GGCC	2 cut(s)	120, 387
ApeKI	GCWGC	2 cut(s)	638, 668
ApoI	RAATTY	1 cut(s)	657
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BanII	GRGCYC	1 cut(s)	624
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	363, 624
BbvI	GCAGC	2 cut(s)	625, 655
BccI	CCATC	3 cut(s)	142, 272, 674
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciVI	GTATCC	2 cut(s)	93, 233
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	65, 487
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	158
BfuI	GTATCC	2 cut(s)	93, 233
BisI	GCNGC	2 cut(s)	639, 669
BlsI	GCNGC	2 cut(s)	640, 670
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	3 cut(s)	154, 193, 448
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	3 cut(s)	94, 236, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
Bse1I	ACTGG	2 cut(s)	395, 482
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	153, 283
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
BseMII	CTCAG	3 cut(s)	104, 264, 375
BseNI	ACTGG	2 cut(s)	395, 482
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	625, 655
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	122, 389
BsiHKAI	GWGCWC	2 cut(s)	363, 624
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	95, 237, 584
BslFI	GGGAC	2 cut(s)	45, 568
BslI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
BsmAI	GTCTC	2 cut(s)	65, 487
BsmFI	GGGAC	2 cut(s)	45, 568
BsnI	GGCC	2 cut(s)	122, 389
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	363, 624
Bsp13I	TCCGGA	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	304, 319, 684
BspACI	CCGC	2 cut(s)	86, 461
BspANI	GGCC	2 cut(s)	122, 389
BspCNI	CTCAG	3 cut(s)	105, 265, 376
BspEI	TCCGGA	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	692
BsrI	ACTGG	2 cut(s)	395, 482
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	304, 319, 684
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst4CI	ACNGT	4 cut(s)	559, 609, 691, 705
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	130, 636, 666
BstDEI	CTNAG	3 cut(s)	113, 273, 384
BstF5I	GGATG	2 cut(s)	153, 283
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	3 cut(s)	307, 322, 687
BstMAI	GTCTC	2 cut(s)	65, 487
BstMBI	GATC	3 cut(s)	304, 319, 684
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 164
BstNSI	RCATGY	1 cut(s)	668
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	625, 655
BstV2I	GAAGAC	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 233
BsuRI	GGCC	2 cut(s)	122, 389
BtsCI	GGATG	2 cut(s)	153, 283
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	3 cut(s)	130, 636, 666
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	706
CviAII	CATG	4 cut(s)	184, 422, 488, 665
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	3 cut(s)	113, 273, 384
DpnI	GATC	3 cut(s)	306, 321, 686
DpnII	GATC	3 cut(s)	304, 319, 684
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	624
FaeI	CATG	4 cut(s)	187, 425, 491, 668
FaqI	GGGAC	2 cut(s)	45, 568
FatI	CATG	4 cut(s)	183, 421, 487, 664
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	2 cut(s)	639, 669
FokI	GGATG	2 cut(s)	160, 290
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	2 cut(s)	639, 669
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	639, 669
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	122, 389
HapII	CCGG	3 cut(s)	95, 237, 584
Hin1II	CATG	4 cut(s)	187, 425, 491, 668
HincII	GTYRAC	2 cut(s)	472, 579
HindII	GTYRAC	2 cut(s)	472, 579
HinfI	GANTC	3 cut(s)	380, 575, 580
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	3 cut(s)	95, 237, 584
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	3 cut(s)	92, 472, 579
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	4 cut(s)	272, 308, 401, 584
Hpy8I	GTNNAC	3 cut(s)	92, 472, 579
HpyAV	CCTTC	3 cut(s)	22, 425, 505
HpyCH4III	ACNGT	4 cut(s)	559, 609, 691, 705
HpyCH4V	TGCA	4 cut(s)	40, 158, 167, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 164
HpyF3I	CTNAG	3 cut(s)	113, 273, 384
Hsp92II	CATG	4 cut(s)	187, 425, 491, 668
Kpn2I	TCCGGA	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	304, 319, 684
LmnI	GCTCC	4 cut(s)	4, 97, 109, 619
Lsp1109I	GCAGC	2 cut(s)	625, 655
LweI	GCATC	3 cut(s)	154, 193, 448
MaeI	CTAG	1 cut(s)	75
MalI	GATC	3 cut(s)	306, 321, 686
MboI	GATC	3 cut(s)	304, 319, 684
MboII	GAAGA	3 cut(s)	223, 239, 604
MhlI	GDGCHC	2 cut(s)	363, 624
MluCI	AATT	3 cut(s)	366, 481, 657
MlyI	GAGTC	2 cut(s)	574, 584
MnlI	CCTC	9 cut(s)	111, 112, 133, 263, 268, 379, 383, 512, 545
MroI	TCCGGA	1 cut(s)	583
MseI	TTAA	2 cut(s)	176, 471
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	3 cut(s)	95, 237, 584
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	149, 164
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	304, 319, 684
NlaIII	CATG	4 cut(s)	187, 425, 491, 668
NlaIV	GGNNCC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	668
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	640, 670
PleI	GAGTC	2 cut(s)	574, 583
PpsI	GAGTC	2 cut(s)	574, 583
Psp124BI	GAGCTC	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	624
SalI	GTCGAC	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	176, 471
SatI	GCNGC	2 cut(s)	639, 669
Sau3AI	GATC	3 cut(s)	304, 319, 684
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	2 cut(s)	574, 584
SduI	GDGCHC	2 cut(s)	363, 624
SfaNI	GCATC	3 cut(s)	154, 193, 448
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	3 cut(s)	366, 481, 657
SsiI	CCGC	2 cut(s)	86, 461
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	624
TaaI	ACNGT	4 cut(s)	559, 609, 691, 705
TaqI	TCGA	3 cut(s)	26, 456, 578
TasI	AATT	3 cut(s)	366, 481, 657
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	176, 471
Tru9I	TTAA	2 cut(s)	176, 471
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	2 cut(s)	638, 668
TspDTI	ATGAA	3 cut(s)	438, 444, 515
TspRI	CASTG	2 cut(s)	130, 262
XapI	RAATTY	1 cut(s)	657
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	578
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.