Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

5899257 .. 5901470

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1073100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGCACAGCGTTAAAAAGGACGGGAATCCGGTGAACAAGGGACTGCTGCAGAGTGACGAGTTATATCAGTATATCTTGGAGACCAGTGTATATCCACGTGAACCGGAGCCTCTCAAGGAGCTAAGAGCTGCCACCGCCAGCCACCCGAGGGCTGAGATGGCTACTGCACCAGATGCAGGTCAGTTAATGGCCATGCTGTTGAAGCTCGTAGATGCAAAGAAAACGATTGAAGTTGGCGTTTTCACCGGATACTCTCTCCTCCTTACTGCTCTTACAATTCCCGACGATGGCAAGATTGTAGCCATAGATGTGAATCGTGAGGCGTATGAGCAAATAGGGCTTCCAATCATAAAGAAAGCCGGTGTTGCGCACAAAATCGACTTCATTGAATCCCAGGCCCTACCGGTTCTTGATAAGCTACTAGAAAATCATGAAAACGAAGGAAGTTTCGACTTTGCTTTCATCGATGCCGACAAGGACAACTACTGGAACTACCATGAGAGGCTAATGAAGCTGTTGAAGGTGGGTGGTTTAGTTGTCTATGATAACACCCTCTGGGGAGGAACGGTTGTAATGCCTGATGAGTTGACTCCAGAGAGCAAGAAACCAAGCAGACCGGCGACCATCGAGTTTAACAAGTTCCTTGCAGCCGATCCTCGTGTCCAGATTTCGCATGCTTCTTTGGGTGATGGGATCACAATCTGTCGTCGTCTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

241

Amino Acids

26.72

Weight (kDa)

5.31

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	28 - 239	4.9e-80	O-methyltransferase
Methyltransf_24	PF13578	77 - 184	1e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	650, 704
AcoI	YGGCCR	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	151, 179, 290
AgeI	ACCGGT	1 cut(s)	406
AgsI	TTSAA	4 cut(s)	205, 233, 392, 523
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	5 cut(s)	124, 131, 208, 421, 517
AluI	AGCT	5 cut(s)	124, 131, 208, 421, 517
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	650, 704
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	2 cut(s)	192, 399
ApeKI	GCWGC	3 cut(s)	49, 131, 650
AsiGI	ACCGGT	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	400
AsuHPI	GGTGA	3 cut(s)	46, 238, 701
AvaI	CYCGRG	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	194
BauI	CACGAG	1 cut(s)	660
BbrPI	CACGTG	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	36, 118, 662
BccI	CCATC	4 cut(s)	154, 284, 635, 686
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	50, 132, 651
BlsI	GCNGC	3 cut(s)	51, 133, 652
Bme1390I	CCNGG	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	3 cut(s)	166, 205, 460
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	101
BsaBI	GATNNNNATC	2 cut(s)	315, 701
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	149, 396
BsaWI	WCCGGW	4 cut(s)	31, 106, 248, 406
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 179, 290
Bse118I	RCCGGY	3 cut(s)	362, 406, 619
Bse1I	ACTGG	2 cut(s)	87, 494
Bse8I	GATNNNNATC	2 cut(s)	315, 701
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	149, 396
BseJI	GATNNNNATC	2 cut(s)	315, 701
BseLI	CCNNNNNNNGG	3 cut(s)	151, 179, 290
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	87, 494
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	3 cut(s)	36, 118, 662
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	194, 401
BshTI	ACCGGT	1 cut(s)	406
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	6 cut(s)	32, 107, 249, 363, 407, 620
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	151, 179, 290
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	194, 401
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	655, 696
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	194, 401
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	111
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	650, 704
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	3 cut(s)	362, 406, 619
BsrI	ACTGG	2 cut(s)	87, 494
BssAI	RCCGGY	3 cut(s)	362, 406, 619
BssECI	CCNNGG	2 cut(s)	149, 396
BssMI	GATC	2 cut(s)	655, 696
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	142, 678
BstDEI	CTNAG	2 cut(s)	125, 156
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	2 cut(s)	658, 699
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	655, 696
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 161, 176, 205, 340, 368, 514
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	396
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	36, 118, 662
Bsu15I	ATCGAT	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	194, 401
BsuTUI	ATCGAT	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	142, 678
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	373
Cfr10I	RCCGGY	3 cut(s)	362, 406, 619
Cfr13I	GGNCC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	468
CspAI	ACCGGT	1 cut(s)	406
CviAII	CATG	4 cut(s)	196, 434, 500, 677
DdeI	CTNAG	2 cut(s)	125, 156
DpnI	GATC	2 cut(s)	657, 698
DpnII	GATC	2 cut(s)	655, 696
EaeI	YGGCCR	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	396
FaeI	CATG	4 cut(s)	199, 437, 503, 680
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	195, 433, 499, 676
Fnu4HI	GCNGC	3 cut(s)	50, 132, 651
Fsp4HI	GCNGC	3 cut(s)	50, 132, 651
FspBI	CTAG	1 cut(s)	425
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	3 cut(s)	50, 132, 651
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	194, 401
HapII	CCGG	6 cut(s)	32, 107, 249, 363, 407, 620
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	4 cut(s)	199, 437, 503, 680
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	4 cut(s)	28, 316, 392, 592
HpaII	CCGG	6 cut(s)	32, 107, 249, 363, 407, 620
HphI	GGTGA	3 cut(s)	46, 238, 701
Hpy166II	GTNNAC	3 cut(s)	37, 104, 591
Hpy188III	TCNNGA	6 cut(s)	284, 320, 413, 434, 596, 667
Hpy8I	GTNNAC	3 cut(s)	37, 104, 591
Hpy99I	CGWCG	2 cut(s)	290, 714
HpyAV	CCTTC	2 cut(s)	437, 517
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	5 cut(s)	52, 170, 179, 218, 650
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 161, 176, 205, 340, 368, 514
HpyF3I	CTNAG	2 cut(s)	125, 156
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	4 cut(s)	199, 437, 503, 680
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	2 cut(s)	655, 696
LmnI	GCTCC	3 cut(s)	4, 109, 121
Lsp1109I	GCAGC	3 cut(s)	36, 118, 662
LweI	GCATC	3 cut(s)	166, 205, 460
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	657, 698
MboI	GATC	2 cut(s)	655, 696
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	586
MnlI	CCTC	8 cut(s)	123, 144, 272, 316, 498, 557, 566, 669
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	3 cut(s)	15, 188, 636
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	6 cut(s)	32, 107, 249, 363, 407, 620
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	7 cut(s)	137, 161, 176, 205, 340, 368, 514
NdeII	GATC	2 cut(s)	655, 696
NlaIII	CATG	4 cut(s)	199, 437, 503, 680
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	56
NsbI	TGCGCA	1 cut(s)	372
NspI	RCATGY	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	680
PagI	TCATGA	1 cut(s)	433
PfeI	GAWTC	3 cut(s)	28, 316, 392
PinAI	ACCGGT	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	51, 133, 652
PleI	GAGTC	1 cut(s)	586
PmaCI	CACGTG	1 cut(s)	101
PmlI	CACGTG	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	586
Ppu21I	YACGTR	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	15, 188, 636
SatI	GCNGC	3 cut(s)	50, 132, 651
Sau3AI	GATC	2 cut(s)	655, 696
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	8 cut(s)	103, 126, 133, 184, 210, 423, 519, 528
SfaNI	GCATC	3 cut(s)	166, 205, 460
SfcI	CTRYAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	571
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	4 cut(s)	381, 453, 468, 630
TasI	AATT	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	28, 316, 392
Tru1I	TTAA	3 cut(s)	15, 188, 636
Tru9I	TTAA	3 cut(s)	15, 188, 636
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	3 cut(s)	49, 131, 650
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	376, 450, 454, 527
TspRI	CASTG	1 cut(s)	94
XceI	RCATGY	1 cut(s)	680
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.