Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003027.1

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

18319 .. 19191

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003027.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgtggcagtatatcttggagactagtgtgtatccgcgtgaaccagagcgtctcaaggagcttagggatgccactgtcagccaccccagggctgagatggctactgcaccagatgcaggcctgttgatgaccatgctgttggggctagtagatgcaaagaagatgattgaagttggagtttgtacaggatactctcttctcctcactgctcttgcaattcctgaggatggcaagcatgaaaatgaaggaagttttgactttgcttttgtcgatgcggacaaggttaaccattggaattaccaagatttatatggaacagtctccgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

109

Amino Acids

12.24

Weight (kDa)

4.64

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	37
AciI	CCGC	2 cut(s)	35, 275
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	3 cut(s)	88, 116, 227
AgsI	TTSAA	1 cut(s)	170
AhlI	ACTAGT	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	3 cut(s)	14, 56, 325
AoxI	GGCC	1 cut(s)	118
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AxyI	CCTNAGG	1 cut(s)	222
BccI	CCATC	2 cut(s)	91, 221
BciT130I	CCWGG	1 cut(s)	88
BciVI	GTATCC	2 cut(s)	42, 182
BcoDI	GTCTC	3 cut(s)	14, 56, 325
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 146
BfuI	GTATCC	2 cut(s)	42, 182
Bme1390I	CCNGG	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	4 cut(s)	58, 103, 142, 262
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	86, 87
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 116, 227
Bse21I	CCTNAGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	86, 87
BseGI	GGATG	2 cut(s)	73, 232
BseLI	CCNNNNNNNGG	3 cut(s)	88, 116, 227
BseMII	CTCAG	2 cut(s)	84, 213
BseRI	GAGGAG	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	120
BslI	CCNNNNNNNGG	3 cut(s)	88, 116, 227
BsmAI	GTCTC	3 cut(s)	14, 56, 325
BsmBI	CGTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	182
BspACI	CCGC	2 cut(s)	35, 275
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	2 cut(s)	85, 214
BspFNI	CGCG	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	86, 87
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	76, 319
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	118, 233
BstDEI	CTNAG	3 cut(s)	62, 93, 222
BstF5I	GGATG	2 cut(s)	73, 232
BstFNI	CGCG	1 cut(s)	37
BstMAI	GTCTC	3 cut(s)	14, 56, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 113, 142
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	139
Bsu36I	CCTNAGG	1 cut(s)	222
BsuI	GTATCC	2 cut(s)	42, 182
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	73, 232
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	72, 204
Cac8I	GCNNGC	2 cut(s)	118, 233
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	2 cut(s)	133, 236
CviJI	RGCY	6 cut(s)	61, 81, 92, 101, 120, 145
CviKI_1	RGCY	6 cut(s)	61, 81, 92, 101, 120, 145
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	3 cut(s)	62, 93, 222
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	86
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	2 cut(s)	136, 239
FaiI	YATR	5 cut(s)	12, 134, 237, 310, 312
FatI	CATG	2 cut(s)	132, 235
FokI	GGATG	2 cut(s)	80, 239
FspBI	CTAG	2 cut(s)	24, 146
HaeIII	GGCC	1 cut(s)	120
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	136, 239
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HpaI	GTTAAC	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	41, 286
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	41, 286
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	76, 319
HpyCH4V	TGCA	4 cut(s)	107, 116, 155, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 113, 142
HpyF3I	CTNAG	3 cut(s)	62, 93, 222
Hsp92II	CATG	2 cut(s)	136, 239
KspAI	GTTAAC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	57, 73, 100, 102, 123, 134, 171, 234
LweI	GCATC	4 cut(s)	58, 103, 142, 262
MaeI	CTAG	2 cut(s)	24, 146
MboII	GAAGA	2 cut(s)	172, 188
MluCI	AATT	2 cut(s)	216, 295
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	212, 217
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	98, 113, 142
NlaIII	CATG	2 cut(s)	136, 239
PasI	CCCWGGG	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	2 cut(s)	63, 285
SfaNI	GCATC	4 cut(s)	58, 103, 142, 262
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	2 cut(s)	216, 295
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	35, 275
SspMI	CTAG	2 cut(s)	24, 146
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	76, 319
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	216, 295
TatI	WGTACW	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	79, 211
TspDTI	ATGAA	2 cut(s)	252, 258
TspRI	CASTG	2 cut(s)	79, 211
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 308
XspI	CTAG	2 cut(s)	24, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.