Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Forward (+)

7021715 .. 7022933

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGGGCTGAACAAGAAAAAGGTATCGAAGGGACTATTGCAGAGTGATGACTTGTATCAGTATATCTTGGAGACTAGCGTGTATCCGCGTGAACCGGAGCCTCTCAAGGAGCTGAGAGAGGCCACTGCCAGCCACCCCGGGGCTGGGATGGGTACTGCACCAGATGCAGGTCAGTTAATGACCATGCTATTGAAGTTAGTAGATGCAAAGAAGACGATTGAAGTTGGTGTTTTTACTGGATACTCTCTTCTCCTCACTGCTCTTACAATTCCTGAGGATGGCAAGATTGTAGCCATAGATGTAGATCGTGAGCCATATGATCAAATAGGATTTCCAATAATAAAGAAAGCTGGTGTTGAGCACAAAATTGACCTCATTGAATCTGAGGCCCTGCCCGTTCTTGATAAGCTATTGGAACAAGCAAGTATCGCGCTTTTTTTTTTTAAACTCCAACTGCATGAAAATGAAGGAAGTTTCGACTTTGCTGTCGTTGATGCAGACAAGGTTAACTACTGCAAGTACCATGAGAGACTAATGAAGCTGCTGAAGGTGGGGGGTATAGCTGTGTATGATAACACTCTATGGGGAGGGACAGTTGTAATGCCTATTGAGTCGACTCCGGAACAGATGAAACTAGGCAGACAGTCTATTATGGAGCTCAATAAGTTGCTCGCTGCTGATACTGGGGACCAAATTTCCCATGCTGCTTTGGGTGATTGGATCACAATTTGTAGGCGACTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

248

Amino Acids

27.51

Weight (kDa)

5.21

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 247	1.5e-66	O-methyltransferase
Methyltransf_24	PF13578	73 - 192	5.8e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	2 cut(s)	88, 431
AccIII	TCCGGA	1 cut(s)	619
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	728
AcsI	RAATTY	1 cut(s)	693
AcuI	CTGAAG	1 cut(s)	566
AfaI	GTAC	3 cut(s)	154, 521, 743
AfiI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
AgsI	TTSAA	3 cut(s)	193, 221, 380
AluBI	AGCT	6 cut(s)	112, 350, 409, 541, 563, 658
AluI	AGCT	6 cut(s)	112, 350, 409, 541, 563, 658
Alw21I	GWGCWC	2 cut(s)	363, 660
Alw26I	GTCTC	2 cut(s)	65, 523
AlwI	GGATC	1 cut(s)	728
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	2 cut(s)	120, 387
ApeKI	GCWGC	3 cut(s)	541, 674, 704
ApoI	RAATTY	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	388, 688
AsuC2I	CCSGG	2 cut(s)	138, 139
AsuHPI	GGTGA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	688
AxyI	CCTNAGG	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	363, 660
BbvI	GCAGC	3 cut(s)	528, 661, 691
BccI	CCATC	2 cut(s)	142, 272
BciVI	GTATCC	2 cut(s)	93, 233
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	138, 139
BcoDI	GTCTC	2 cut(s)	65, 523
BfaI	CTAG	2 cut(s)	75, 635
BfuAI	ACCTGC	1 cut(s)	158
BfuI	GTATCC	2 cut(s)	93, 233
BisI	GCNGC	3 cut(s)	542, 675, 705
BlsI	GCNGC	3 cut(s)	543, 676, 706
Bme1390I	CCNGG	2 cut(s)	138, 139
Bme18I	GGWCC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	388, 688
BmiI	GGNNCC	2 cut(s)	99, 689
BmrFI	CCNGG	2 cut(s)	138, 139
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	3 cut(s)	154, 193, 484
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	2 cut(s)	138, 139
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	136, 137, 138
BsaWI	WCCGGW	2 cut(s)	94, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
Bse1I	ACTGG	2 cut(s)	241, 688
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	619
BseDI	CCNNGG	3 cut(s)	136, 137, 138
BseGI	GGATG	2 cut(s)	153, 283
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
BseMII	CTCAG	3 cut(s)	104, 264, 375
BseNI	ACTGG	2 cut(s)	241, 688
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	528, 661, 691
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	88, 431
BshFI	GGCC	2 cut(s)	122, 389
BsiHKAI	GWGCWC	2 cut(s)	363, 660
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	95, 138, 620
BslFI	GGGAC	3 cut(s)	45, 604, 701
BslI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
BsmAI	GTCTC	2 cut(s)	65, 523
BsmFI	GGGAC	3 cut(s)	45, 604, 701
BsnI	GGCC	2 cut(s)	122, 389
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	363, 660
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	3 cut(s)	304, 319, 720
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	122, 389
BspCNI	CTCAG	3 cut(s)	105, 265, 376
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	2 cut(s)	88, 431
BspLI	GGNNCC	2 cut(s)	99, 689
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	728
BsrI	ACTGG	2 cut(s)	241, 688
BssECI	CCNNGG	3 cut(s)	136, 137, 138
BssMI	GATC	3 cut(s)	304, 319, 720
Bst4CI	ACNGT	3 cut(s)	595, 645, 741
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	130, 672
BstDEI	CTNAG	3 cut(s)	113, 273, 384
BstF5I	GGATG	2 cut(s)	153, 283
BstFNI	CGCG	2 cut(s)	88, 431
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	307, 322, 723
BstMAI	GTCTC	2 cut(s)	65, 523
BstMBI	GATC	3 cut(s)	304, 319, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 428
BstSCI	CCNGG	2 cut(s)	136, 137
BstUI	CGCG	2 cut(s)	88, 431
BstV1I	GCAGC	3 cut(s)	528, 661, 691
BstV2I	GAAGAC	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 233
BsuRI	GGCC	2 cut(s)	122, 389
BtsCI	GGATG	2 cut(s)	153, 283
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	130, 672
CfoI	GCGC	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	388, 688
Cfr9I	CCCGGG	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	153, 520, 742
CviAII	CATG	4 cut(s)	184, 458, 524, 701
CviQI	GTAC	3 cut(s)	153, 520, 742
DdeI	CTNAG	3 cut(s)	113, 273, 384
DpnI	GATC	3 cut(s)	306, 321, 722
DpnII	GATC	3 cut(s)	304, 319, 720
DraI	TTTAAA	1 cut(s)	445
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	660
FaeI	CATG	4 cut(s)	187, 461, 527, 704
FaqI	GGGAC	3 cut(s)	45, 604, 701
FatI	CATG	4 cut(s)	183, 457, 523, 700
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	3 cut(s)	542, 675, 705
FokI	GGATG	2 cut(s)	160, 290
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	542, 675, 705
FspBI	CTAG	2 cut(s)	75, 635
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	3 cut(s)	542, 675, 705
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	122, 389
HapII	CCGG	3 cut(s)	95, 138, 620
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	4 cut(s)	187, 461, 527, 704
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	2 cut(s)	508, 615
HindII	GTYRAC	2 cut(s)	508, 615
HinfI	GANTC	3 cut(s)	380, 611, 616
HpaI	GTTAAC	1 cut(s)	508
HpaII	CCGG	3 cut(s)	95, 138, 620
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	3 cut(s)	92, 508, 615
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	4 cut(s)	272, 308, 401, 620
Hpy8I	GTNNAC	3 cut(s)	92, 508, 615
HpyAV	CCTTC	3 cut(s)	22, 461, 541
HpyCH4III	ACNGT	3 cut(s)	595, 645, 741
HpyCH4V	TGCA	7 cut(s)	40, 158, 167, 206, 457, 497, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 428
HpyF3I	CTNAG	3 cut(s)	113, 273, 384
Hsp92II	CATG	4 cut(s)	187, 461, 527, 704
HspAI	GCGC	1 cut(s)	431
Kpn2I	TCCGGA	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	304, 319, 720
LmnI	GCTCC	3 cut(s)	97, 109, 655
Lsp1109I	GCAGC	3 cut(s)	528, 661, 691
LweI	GCATC	3 cut(s)	154, 193, 484
MaeI	CTAG	2 cut(s)	75, 635
MalI	GATC	3 cut(s)	306, 321, 722
MboI	GATC	3 cut(s)	304, 319, 720
MboII	GAAGA	2 cut(s)	223, 239
MhlI	GDGCHC	2 cut(s)	363, 660
MluCI	AATT	4 cut(s)	267, 366, 693, 726
MlyI	GAGTC	2 cut(s)	610, 620
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	7 cut(s)	111, 112, 263, 268, 379, 383, 581
MroI	TCCGGA	1 cut(s)	619
MseI	TTAA	3 cut(s)	176, 444, 507
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	3 cut(s)	95, 138, 620
MspR9I	CCNGG	2 cut(s)	138, 139
MvnI	CGCG	2 cut(s)	88, 431
MwoI	GCNNNNNNNGC	2 cut(s)	164, 428
NciI	CCSGG	2 cut(s)	138, 139
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	304, 319, 720
NlaIII	CATG	4 cut(s)	187, 461, 527, 704
NlaIV	GGNNCC	2 cut(s)	99, 689
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	543, 676, 706
PleI	GAGTC	2 cut(s)	610, 619
PpsI	GAGTC	2 cut(s)	610, 619
Psp124BI	GAGCTC	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	99, 689
PspPI	GGNCC	2 cut(s)	388, 688
RsaI	GTAC	3 cut(s)	154, 521, 743
RsaNI	GTAC	3 cut(s)	153, 520, 742
RseI	CAYNNNNRTG	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	660
SalI	GTCGAC	1 cut(s)	613
SaqAI	TTAA	3 cut(s)	176, 444, 507
SatI	GCNGC	3 cut(s)	542, 675, 705
Sau3AI	GATC	3 cut(s)	304, 319, 720
Sau96I	GGNCC	2 cut(s)	388, 688
SchI	GAGTC	2 cut(s)	610, 620
ScrFI	CCNGG	2 cut(s)	138, 139
SduI	GDGCHC	2 cut(s)	363, 660
SfaNI	GCATC	3 cut(s)	154, 193, 484
SinI	GGWCC	1 cut(s)	688
SmaI	CCCGGG	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	267, 366, 693, 726
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	75, 635
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	136, 137
TaaI	ACNGT	3 cut(s)	595, 645, 741
TaqI	TCGA	3 cut(s)	26, 477, 614
TasI	AATT	4 cut(s)	267, 366, 693, 726
TatI	WGTACW	1 cut(s)	741
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	176, 444, 507
Tru9I	TTAA	3 cut(s)	176, 444, 507
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	3 cut(s)	541, 674, 704
TspDTI	ATGAA	4 cut(s)	474, 480, 551, 644
TspMI	CCCGGG	1 cut(s)	137
TspRI	CASTG	2 cut(s)	130, 262
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	1 cut(s)	693
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmaI	CCCGGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	2 cut(s)	75, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.