Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

3614890 .. 3616645

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06841.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGCACAACACGAAGAAGGTGTCAAAGGGACTATTGCAGAGTGATGAATTGTATCAGTATATTTTGGAGACTAGTGTGTATCCGCGTGAACCAAAGCCTCTCAAGGAGCTTAGGGAAGCCACTGCCAGCCATCCCAGGGCTGAGATGGCTACTTCACCAGATGCAGGCCAGTTGATGACCATGCTGTTGGGGCTAGTGGATGCAAAGAAGACGATTGAAGTTGGAGTTTTTACAGGATACTCTCTTCTCCTCACTGCTCTTGCAATTCCTGAGGATGGCAAGATTGTAGCCATTGATGTCAATCGTGAGCCATATGATCAAATAGGATTTCCAATCATAAAGAAAGGTGGTGTTGAGCACAAAATTGACCTCATTGAATCGGAGGCCTTGCCTGTGCTTGATAAGTTAGTGGAACAACATGGAAATGAAGGAAGTTTCGACTTTTCTTTCGTTGATGCAGACAAGGTTAACTACTGGAATTACCATGAGAGACTAATGAAGCTGCTGAGGGTGGGAGGTATAGCTGTATATGATAACACTCTTTGGGAAGGGTCAGTTGTAATGCCTCATGAGTCTACTCCAGAATTCATGAAACCAGGCAGACAGTATACTATAGAGCTTAACAAGTCTCTGGCAGCTGATCCGCGTGTGCAGCTTTCACATGCTTCTTTGGGAGATGGGATCACAATTTGTAGGCGATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

237

Amino Acids

26.44

Weight (kDa)

5.42

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	7e-77	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	1.7e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	578, 611
AccII	CGCG	2 cut(s)	88, 649
AciI	CCGC	2 cut(s)	86, 647
AclWI	GGATC	2 cut(s)	638, 692
AcsI	RAATTY	1 cut(s)	587
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
AgsI	TTSAA	2 cut(s)	221, 380
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	137, 598
AluBI	AGCT	6 cut(s)	112, 505, 527, 622, 641, 658
AluI	AGCT	6 cut(s)	112, 505, 527, 622, 641, 658
Alw21I	GWGCWC	2 cut(s)	9, 363
Alw26I	GTCTC	3 cut(s)	65, 487, 636
AlwI	GGATC	2 cut(s)	638, 692
AoxI	GGCC	2 cut(s)	169, 387
ApeKI	GCWGC	3 cut(s)	505, 638, 655
ApoI	RAATTY	1 cut(s)	587
ArsI	GACNNNNNNTTYG	4 cut(s)	8, 40, 434, 466
AsuHPI	GGTGA	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	9, 363
BbvCI	CCTCAGC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	492, 650, 667
BccI	CCATC	4 cut(s)	141, 142, 272, 674
BciT130I	CCWGG	2 cut(s)	139, 600
BciVI	GTATCC	2 cut(s)	93, 233
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	3 cut(s)	65, 487, 636
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 197
BfmI	CTRYAG	1 cut(s)	615
BfuI	GTATCC	2 cut(s)	93, 233
BisI	GCNGC	3 cut(s)	506, 639, 656
BlsI	GCNGC	3 cut(s)	507, 640, 657
Bme1390I	CCNGG	2 cut(s)	139, 600
BmrFI	CCNGG	2 cut(s)	139, 600
BmsI	GCATC	3 cut(s)	154, 193, 448
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	2 cut(s)	113, 509
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	137, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 167, 278
Bse1I	ACTGG	2 cut(s)	172, 482
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	139, 600
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	3 cut(s)	133, 208, 283
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BseMII	CTCAG	3 cut(s)	135, 264, 500
BseNI	ACTGG	2 cut(s)	172, 482
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	492, 650, 667
BsgI	GTGCAG	1 cut(s)	674
Bsh1236I	CGCG	2 cut(s)	88, 649
BshFI	GGCC	2 cut(s)	171, 389
BsiHKAI	GWGCWC	2 cut(s)	9, 363
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BsmAI	GTCTC	3 cut(s)	65, 487, 636
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	171, 389
Bsp1286I	GDGCHC	2 cut(s)	9, 363
Bsp143I	GATC	3 cut(s)	319, 643, 684
BspACI	CCGC	2 cut(s)	86, 647
BspANI	GGCC	2 cut(s)	171, 389
BspCNI	CTCAG	3 cut(s)	136, 265, 501
BspFNI	CGCG	2 cut(s)	88, 649
BspHI	TCATGA	2 cut(s)	571, 591
BspPI	GGATC	2 cut(s)	638, 692
BsrI	ACTGG	2 cut(s)	172, 482
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	3 cut(s)	319, 643, 684
BssNAI	GTATAC	1 cut(s)	612
Bst1107I	GTATAC	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	139, 600
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	130, 169
BstDEI	CTNAG	4 cut(s)	113, 144, 273, 509
BstF5I	GGATG	3 cut(s)	133, 208, 283
BstFNI	CGCG	2 cut(s)	88, 649
BstKTI	GATC	3 cut(s)	322, 646, 687
BstMAI	GTCTC	3 cut(s)	65, 487, 636
BstMBI	GATC	3 cut(s)	319, 643, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 193, 655
BstNI	CCWGG	2 cut(s)	139, 600
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	137, 598
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	2 cut(s)	88, 649
BstV1I	GCAGC	3 cut(s)	492, 650, 667
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 233
BsuRI	GGCC	2 cut(s)	171, 389
BtsCI	GGATG	3 cut(s)	133, 208, 283
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
Cac8I	GCNNGC	2 cut(s)	130, 169
CciI	TCATGA	2 cut(s)	571, 591
Csp6I	GTAC	1 cut(s)	706
CviAII	CATG	6 cut(s)	184, 422, 488, 572, 592, 665
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	4 cut(s)	113, 144, 273, 509
DpnI	GATC	3 cut(s)	321, 645, 686
DpnII	GATC	3 cut(s)	319, 643, 684
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	137, 598
FaeI	CATG	6 cut(s)	187, 425, 491, 575, 595, 668
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	6 cut(s)	183, 421, 487, 571, 591, 664
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	2 cut(s)	578, 611
Fnu4HI	GCNGC	3 cut(s)	506, 639, 656
FokI	GGATG	3 cut(s)	120, 215, 290
Fsp4HI	GCNGC	3 cut(s)	506, 639, 656
FspBI	CTAG	2 cut(s)	75, 197
GluI	GCNGC	3 cut(s)	506, 639, 656
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	171, 389
Hin1II	CATG	6 cut(s)	187, 425, 491, 575, 595, 668
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	2 cut(s)	380, 575
HpaI	GTTAAC	1 cut(s)	472
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	4 cut(s)	92, 472, 579, 612
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	5 cut(s)	272, 308, 572, 584, 592
Hpy8I	GTNNAC	4 cut(s)	92, 472, 579, 612
HpyAV	CCTTC	3 cut(s)	13, 425, 545
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4V	TGCA	6 cut(s)	40, 167, 206, 266, 461, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 193, 655
HpyF3I	CTNAG	4 cut(s)	113, 144, 273, 509
Hsp92II	CATG	6 cut(s)	187, 425, 491, 575, 595, 668
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	319, 643, 684
LmnI	GCTCC	2 cut(s)	4, 109
Lsp1109I	GCAGC	3 cut(s)	492, 650, 667
LweI	GCATC	3 cut(s)	154, 193, 448
MaeI	CTAG	2 cut(s)	75, 197
MalI	GATC	3 cut(s)	321, 645, 686
MboI	GATC	3 cut(s)	319, 643, 684
MboII	GAAGA	3 cut(s)	28, 223, 239
MhlI	GDGCHC	2 cut(s)	9, 363
MluCI	AATT	6 cut(s)	50, 267, 366, 481, 587, 690
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	8 cut(s)	111, 263, 268, 379, 383, 504, 512, 579
MseI	TTAA	2 cut(s)	471, 624
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	641
MspR9I	CCNGG	2 cut(s)	139, 600
MvaI	CCWGG	2 cut(s)	139, 600
MvnI	CGCG	2 cut(s)	88, 649
MwoI	GCNNNNNNNGC	3 cut(s)	149, 193, 655
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	319, 643, 684
NlaIII	CATG	6 cut(s)	187, 425, 491, 575, 595, 668
NspI	RCATGY	1 cut(s)	668
PagI	TCATGA	2 cut(s)	571, 591
PasI	CCCWGGG	1 cut(s)	138
PceI	AGGCCT	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	507, 640, 657
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
Psp6I	CCWGG	2 cut(s)	137, 598
PspGI	CCWGG	2 cut(s)	137, 598
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	471, 624
SatI	GCNGC	3 cut(s)	506, 639, 656
Sau3AI	GATC	3 cut(s)	319, 643, 684
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	139, 600
SduI	GDGCHC	2 cut(s)	9, 363
SfaNI	GCATC	3 cut(s)	154, 193, 448
SfcI	CTRYAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	6 cut(s)	50, 267, 366, 481, 587, 690
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	2 cut(s)	86, 647
SspMI	CTAG	2 cut(s)	75, 197
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	137, 598
TaaI	ACNGT	1 cut(s)	609
TaqI	TCGA	1 cut(s)	441
TasI	AATT	6 cut(s)	50, 267, 366, 481, 587, 690
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	471, 624
Tru9I	TTAA	2 cut(s)	471, 624
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	3 cut(s)	505, 638, 655
TspDTI	ATGAA	5 cut(s)	63, 444, 515, 580, 608
TspRI	CASTG	2 cut(s)	130, 262
XapI	RAATTY	1 cut(s)	587
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	578, 611
XspI	CTAG	2 cut(s)	75, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.