Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

5668564 .. 5669197

Gene Structure 634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG075100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGCACAACACGGAAAAGGTATCAAAGGGACTATTGCAGAATGATGAATTGTATCAGTATATCTTGGAGACTAGTGTGTATCCGCGTGAACCGGAGCATCTCAAGGAGCTTAGGGATGCCACTGCCAGCCAACCCAGGGCTGAGATGGCTACTGCACCAGATGCAGGCCAGTTGATGACCATGCTGTTGGGGCTAGTAGATGCAAAGAAGACGATTGAAGTTGGGGTTTTTACTGGATACTCTCTTCTCCTCACTGCTCTTGCAATTCCTGAGGATGGCAAGGTCTGTTACTATTTAATTAGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

103

Amino Acids

11.45

Weight (kDa)

4.77

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 97	1.9e-23	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	88
AciI	CCGC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	307
AfiI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
AgsI	TTSAA	1 cut(s)	221
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	169
AxyI	CCTNAGG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	142, 272
BciT130I	CCWGG	1 cut(s)	139
BciVI	GTATCC	2 cut(s)	93, 233
BcoDI	GTCTC	1 cut(s)	65
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 197
BfuI	GTATCC	2 cut(s)	93, 233
Bme1390I	CCNGG	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	4 cut(s)	109, 109, 154, 193
BpiI	GAAGAC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	137, 138
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 167, 278
Bse1I	ACTGG	2 cut(s)	172, 241
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	2 cut(s)	124, 283
BseLI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BseMII	CTCAG	2 cut(s)	135, 264
BseNI	ACTGG	2 cut(s)	172, 241
BseRI	GAGGAG	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	136, 265
BspFNI	CGCG	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	172, 241
BssECI	CCNNGG	2 cut(s)	137, 138
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	130, 169
BstDEI	CTNAG	3 cut(s)	113, 144, 273
BstF5I	GGATG	2 cut(s)	124, 283
BstFNI	CGCG	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 233
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	124, 283
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
Cac8I	GCNNGC	2 cut(s)	130, 169
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	112, 132, 143, 152, 171, 196
CviKI_1	RGCY	6 cut(s)	112, 132, 143, 152, 171, 196
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	3 cut(s)	113, 144, 273
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	137
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	63, 185
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	183
FokI	GGATG	2 cut(s)	131, 290
FspBI	CTAG	2 cut(s)	75, 197
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	187
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	40, 158, 167, 206, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
HpyF3I	CTNAG	3 cut(s)	113, 144, 273
Hsp92II	CATG	1 cut(s)	187
LmnI	GCTCC	3 cut(s)	4, 97, 109
LpnPI	CCDG	9 cut(s)	108, 124, 142, 151, 153, 174, 185, 222, 285
LweI	GCATC	4 cut(s)	109, 109, 154, 193
MaeI	CTAG	2 cut(s)	75, 197
MaeIII	GTNAC	1 cut(s)	290
MboII	GAAGA	2 cut(s)	223, 239
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	50, 267, 300
MnlI	CCTC	2 cut(s)	263, 268
MseI	TTAA	1 cut(s)	299
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
NlaIII	CATG	1 cut(s)	187
PasI	CCCWGGG	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	4 cut(s)	24, 114, 288, 311
SfaNI	GCATC	4 cut(s)	109, 109, 154, 193
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	3 cut(s)	50, 267, 300
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	75, 197
StyD4I	CCNGG	1 cut(s)	137
TasI	AATT	3 cut(s)	50, 267, 300
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	2 cut(s)	130, 262
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	130, 262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	2 cut(s)	75, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.