Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8235837.1

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 764

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8235837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

cacggaaaaggtatcaaagggactattgcagaatgatgaattgtatcagtatatcttggagactagtgtgtatccgcgtgaaccggagcatctcaaggagcttagggatgccactgccagccaccccagggctgagatggctactgcaccagatgcaggccagttgatgaccatgctgttggggctagtagatgcaaagaagacgattgaagttggagtttttactggatactctcttctcctcactgctcttgcaattcctgaggatggcaagattgtagccatagatgtaaaccgtgagccatatgatcaaataggatttccaatcataaagaaagctggtgttgagcacaaaattgacctcattgaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

4.89

Isoelectric Point (pI)

28.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	128, 156, 267
AgsI	TTSAA	2 cut(s)	210, 369
AhlI	ACTAGT	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	101, 339
AluI	AGCT	2 cut(s)	101, 339
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	158
AxyI	CCTNAGG	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	352
BccI	CCATC	2 cut(s)	131, 261
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	2 cut(s)	82, 222
BclI	TGATCA	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	54
BcuI	ACTAGT	1 cut(s)	63
BfaI	CTAG	2 cut(s)	64, 186
BfuI	GTATCC	2 cut(s)	82, 222
Bme1390I	CCNGG	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	4 cut(s)	98, 98, 143, 182
BpiI	GAAGAC	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	126, 127
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 156, 267
Bse1I	ACTGG	2 cut(s)	161, 230
Bse21I	CCTNAGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	126, 127
BseGI	GGATG	2 cut(s)	113, 272
BseLI	CCNNNNNNNGG	3 cut(s)	128, 156, 267
BseMII	CTCAG	2 cut(s)	124, 253
BseNI	ACTGG	2 cut(s)	161, 230
BseRI	GAGGAG	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	128, 156, 267
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	2 cut(s)	125, 254
BspFNI	CGCG	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	161, 230
BssECI	CCNNGG	2 cut(s)	126, 127
BssMI	GATC	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	119, 158
BstDEI	CTNAG	3 cut(s)	102, 133, 262
BstF5I	GGATG	2 cut(s)	113, 272
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 153, 182
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	207
BstXI	CCANNNNNNTGG	1 cut(s)	179
Bsu36I	CCTNAGG	1 cut(s)	262
BsuI	GTATCC	2 cut(s)	82, 222
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	113, 272
BtsI	GCAGTG	2 cut(s)	112, 244
BtsIMutI	CAGTG	2 cut(s)	112, 244
Cac8I	GCNNGC	2 cut(s)	119, 158
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	9 cut(s)	101, 121, 132, 141, 160, 185, 282, 302, 339
CviKI_1	RGCY	9 cut(s)	101, 121, 132, 141, 160, 185, 282, 302, 339
DdeI	CTNAG	3 cut(s)	102, 133, 262
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	241
Eco81I	CCTNAGG	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	176
FaiI	YATR	6 cut(s)	52, 174, 285, 305, 307, 330
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	308
FokI	GGATG	2 cut(s)	120, 279
FspBI	CTAG	2 cut(s)	64, 186
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	84
Hpy166II	GTNNAC	2 cut(s)	81, 293
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	2 cut(s)	81, 293
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	29, 147, 156, 195, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 153, 182
HpyF3I	CTNAG	3 cut(s)	102, 133, 262
Hsp92II	CATG	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	2 cut(s)	86, 98
LweI	GCATC	4 cut(s)	98, 98, 143, 182
MaeI	CTAG	2 cut(s)	64, 186
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	2 cut(s)	212, 228
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	3 cut(s)	39, 256, 355
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	252, 257, 372
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	138, 153, 182
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	4 cut(s)	13, 103, 341, 364
SfaNI	GCATC	4 cut(s)	98, 98, 143, 182
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SpeI	ACTAGT	1 cut(s)	63
Sse9I	AATT	3 cut(s)	39, 256, 355
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	64, 186
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	297
TasI	AATT	3 cut(s)	39, 256, 355
TfiI	GAWTC	1 cut(s)	369
TscAI	CASTG	2 cut(s)	119, 251
TspDTI	ATGAA	1 cut(s)	52
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	119, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	2 cut(s)	64, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.