Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

6232605 .. 6234323

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGCACAACACGGAAAAGGTATCAAAGGGACTATTGCAGAATGATGAATTGTATCAGTATATCTTGGAGACTAGTGTGTATCCGCGTGAACCGGAGCATCTCAAGGAGCTTAGGGATGCCACTGCCAGCCAACCCAGGGCTGAGATGGCTACTGCACCAGATGCAGGCCAGTTGATGACCATGCTGTTGGGGCTAGTAGATGCAAAGAAGACGATTGAAGTTGGGGTTTTTACTGGATACTCTCTTCTCCTCACTGCTCTTGCAATTCCTGAGGATGGCAAGATTGTAGCCATAGATGTAAACCGTGAGCCATATGATCAAATAGGATTTCCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACCTCATTGAATCTGAGGCGCTGCCAGTTCTTGATAAGCTATTGGAACAACATGAAAATGAAGGAAGTTTTGACTTTGCTTTTGTCGATGCTGACAAGGTTAACTATTGGCATTACCATGAGAGACTAATGAAGCTGCTGAAGGTGGGAGGTATAGCTGTGTATGATAACACTCTTTGGGGAGGGTCAGTTGTAATGCCTATTGAGTCGACTCCAGAACACATGAAACCAGGCAGACAGTATACTATAGAGCTCAACAAGTTACTTGCTGCTGATACTCGTGTCCAAATTTCGCATGCTTCTTTGGGTGATGGGATCACAGTTTGTAGGCGACTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

236

Amino Acids

26.46

Weight (kDa)

5.11

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	4e-76	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	1.1e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	578, 611
AccII	CGCG	1 cut(s)	88
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	692
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	1 cut(s)	530
AfiI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
AgsI	TTSAA	2 cut(s)	221, 380
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	137, 598
AluBI	AGCT	6 cut(s)	112, 350, 409, 505, 527, 622
AluI	AGCT	6 cut(s)	112, 350, 409, 505, 527, 622
Alw21I	GWGCWC	3 cut(s)	9, 363, 624
Alw26I	GTCTC	2 cut(s)	65, 487
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	3 cut(s)	391, 505, 638
ApoI	RAATTY	1 cut(s)	657
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspLEI	GCGC	1 cut(s)	391
AsuHPI	GGTGA	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BanII	GRGCYC	1 cut(s)	624
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	3 cut(s)	9, 363, 624
BbvI	GCAGC	3 cut(s)	378, 492, 625
BccI	CCATC	3 cut(s)	142, 272, 674
BciT130I	CCWGG	2 cut(s)	139, 600
BciVI	GTATCC	2 cut(s)	93, 233
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	65, 487
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 197
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	392
BfuI	GTATCC	2 cut(s)	93, 233
BisI	GCNGC	3 cut(s)	392, 506, 639
BlsI	GCNGC	3 cut(s)	393, 507, 640
Bme1390I	CCNGG	2 cut(s)	139, 600
BmrFI	CCNGG	2 cut(s)	139, 600
BmsI	GCATC	5 cut(s)	109, 109, 154, 193, 448
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	137, 138
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 167, 278
Bse1I	ACTGG	3 cut(s)	172, 241, 395
Bse21I	CCTNAGG	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	139, 600
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	2 cut(s)	124, 283
BseLI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BseMII	CTCAG	3 cut(s)	135, 264, 375
BseNI	ACTGG	3 cut(s)	172, 241, 395
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	3 cut(s)	378, 492, 625
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	3 cut(s)	9, 363, 624
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BsmAI	GTCTC	2 cut(s)	65, 487
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	9, 363, 624
Bsp143I	GATC	2 cut(s)	319, 684
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	3 cut(s)	136, 265, 376
BspFNI	CGCG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	692
BsrI	ACTGG	3 cut(s)	172, 241, 395
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	2 cut(s)	319, 684
BssNAI	GTATAC	1 cut(s)	612
BssSI	CACGAG	1 cut(s)	648
Bst1107I	GTATAC	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	139, 600
Bst4CI	ACNGT	3 cut(s)	308, 609, 691
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	130, 169, 666
BstDEI	CTNAG	4 cut(s)	113, 144, 273, 384
BstF5I	GGATG	2 cut(s)	124, 283
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	322, 687
BstMAI	GTCTC	2 cut(s)	65, 487
BstMBI	GATC	2 cut(s)	319, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
BstNI	CCWGG	2 cut(s)	139, 600
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	137, 598
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	378, 492, 625
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstZ17I	GTATAC	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 233
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	124, 283
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
Cac8I	GCNNGC	3 cut(s)	130, 169, 666
CfoI	GCGC	1 cut(s)	391
CviAII	CATG	5 cut(s)	184, 422, 488, 592, 665
DdeI	CTNAG	4 cut(s)	113, 144, 273, 384
DpnI	GATC	2 cut(s)	321, 686
DpnII	GATC	2 cut(s)	319, 684
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	137, 598
EcoT38I	GRGCYC	1 cut(s)	624
FaeI	CATG	5 cut(s)	187, 425, 491, 595, 668
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	5 cut(s)	183, 421, 487, 591, 664
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	2 cut(s)	578, 611
Fnu4HI	GCNGC	3 cut(s)	392, 506, 639
FokI	GGATG	2 cut(s)	131, 290
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	392, 506, 639
FspBI	CTAG	2 cut(s)	75, 197
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	3 cut(s)	392, 506, 639
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	5 cut(s)	187, 425, 491, 595, 668
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	2 cut(s)	472, 579
HindII	GTYRAC	2 cut(s)	472, 579
HinfI	GANTC	3 cut(s)	380, 575, 580
HpaI	GTTAAC	1 cut(s)	472
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	5 cut(s)	92, 304, 472, 579, 612
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	3 cut(s)	272, 401, 584
Hpy8I	GTNNAC	5 cut(s)	92, 304, 472, 579, 612
HpyAV	CCTTC	2 cut(s)	425, 505
HpyCH4III	ACNGT	3 cut(s)	308, 609, 691
HpyCH4V	TGCA	5 cut(s)	40, 158, 167, 206, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
HpyF3I	CTNAG	4 cut(s)	113, 144, 273, 384
Hsp92II	CATG	5 cut(s)	187, 425, 491, 595, 668
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	319, 684
LmnI	GCTCC	3 cut(s)	4, 97, 109
Lsp1109I	GCAGC	3 cut(s)	378, 492, 625
LweI	GCATC	5 cut(s)	109, 109, 154, 193, 448
MaeI	CTAG	2 cut(s)	75, 197
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	2 cut(s)	321, 686
MboI	GATC	2 cut(s)	319, 684
MboII	GAAGA	2 cut(s)	223, 239
MhlI	GDGCHC	3 cut(s)	9, 363, 624
MluCI	AATT	4 cut(s)	50, 267, 366, 657
MlyI	GAGTC	2 cut(s)	574, 584
MnlI	CCTC	6 cut(s)	263, 268, 379, 383, 512, 545
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	426, 486
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	139, 600
MvaI	CCWGG	2 cut(s)	139, 600
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	2 cut(s)	319, 684
NlaIII	CATG	5 cut(s)	187, 425, 491, 595, 668
NspI	RCATGY	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	668
PasI	CCCWGGG	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	393, 507, 640
PleI	GAGTC	2 cut(s)	574, 583
PpsI	GAGTC	2 cut(s)	574, 583
Psp124BI	GAGCTC	1 cut(s)	624
Psp6I	CCWGG	2 cut(s)	137, 598
PspGI	CCWGG	2 cut(s)	137, 598
RseI	CAYNNNNRTG	2 cut(s)	426, 486
SacI	GAGCTC	1 cut(s)	624
SalI	GTCGAC	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	392, 506, 639
Sau3AI	GATC	2 cut(s)	319, 684
SchI	GAGTC	2 cut(s)	574, 584
ScrFI	CCNGG	2 cut(s)	139, 600
SduI	GDGCHC	3 cut(s)	9, 363, 624
SfaNI	GCATC	5 cut(s)	109, 109, 154, 193, 448
SfcI	CTRYAG	1 cut(s)	615
SmiMI	CAYNNNNRTG	2 cut(s)	426, 486
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	74
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	4 cut(s)	50, 267, 366, 657
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	75, 197
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	137, 598
TaaI	ACNGT	3 cut(s)	308, 609, 691
TaqI	TCGA	2 cut(s)	456, 578
TasI	AATT	4 cut(s)	50, 267, 366, 657
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	3 cut(s)	391, 505, 638
TspDTI	ATGAA	5 cut(s)	63, 438, 444, 515, 608
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	130, 262
XapI	RAATTY	1 cut(s)	657
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	578, 611
XspI	CTAG	2 cut(s)	75, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.