Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

6059909 .. 6061122

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGCAGAACAAGAAAAAGGTATCGAAGGGACTATTGCAGAGTGATGACTTGTATCAGTATATCTTGGAGACTAGCGTGTATCCGCGTGAACCGGAGCTTCTCAAGGAGCTGAGAGAGGCCACTGCCAGCCACCCCGAGAACACTAGCTTGGTATTTTTCAGGGCTGGGATGGCTACTGCACCAGATGCAGGTCAGTTAATGACCATGCTATTGAAGTTAGTAGATGCAAAGAAGACGATTGAAGTAGGAGTTTTTACCGGATACTCTCTTCTCCTCACTGCTCTTACAACTCCTGAGGATGGCAAGATTGTCGCCATAGATGTAGATCGTGAGCCATATGATCAAATAGGATTTCCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACCTCATTGAATCTGAGGCCGTGCCAGTTCTTGATAAGCTATTGGAACAACATGAAAATGAAGGAAGTTTTGACTTTGCTTTTGTCGATGCGGACAAGGTTAACTACTGGAATTACCATGAGAGACTAATGAAACTGCTGAAGGTGGGAGGTATAGCTGTGTATGATAACACTCTTTGGGGAGGGACAGTTGTAATGCCTGTTGAGTCGACTCCGGAATGGAAGAAACCAAGCAGACAGTCTATTATGGAGCTCAATAAGTTGCTCGCTGCTGATACTCGTGTCCAAATTTCGCATGCTGCTTTGGGTGATGGGATCACAGTTTGTAGGCGACTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

244

Amino Acids

27.37

Weight (kDa)

5.24

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 243	2e-72	O-methyltransferase
Methyltransf_24	PF13578	81 - 188	1.1e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccI	GTMKAC	1 cut(s)	602
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	607
AciI	CCGC	2 cut(s)	86, 485
AclWI	GGATC	1 cut(s)	716
AcsI	RAATTY	1 cut(s)	681
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	191, 302
AgsI	TTSAA	3 cut(s)	217, 245, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	7 cut(s)	100, 112, 150, 374, 433, 551, 646
AluI	AGCT	7 cut(s)	100, 112, 150, 374, 433, 551, 646
Alw21I	GWGCWC	2 cut(s)	387, 648
Alw26I	GTCTC	2 cut(s)	65, 511
AlwI	GGATC	1 cut(s)	716
Ama87I	CYCGRG	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	607
AoxI	GGCC	2 cut(s)	120, 411
ApeKI	GCWGC	2 cut(s)	662, 692
ApoI	RAATTY	1 cut(s)	681
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AsuHPI	GGTGA	1 cut(s)	713
AvaI	CYCGRG	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	297
BaeI	ACNNNNGTAYC	2 cut(s)	660, 693
BanII	GRGCYC	1 cut(s)	648
BauI	CACGAG	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	387, 648
BbvI	GCAGC	2 cut(s)	649, 679
BccI	CCATC	3 cut(s)	166, 296, 698
BceAI	ACGGC	1 cut(s)	398
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciVI	GTATCC	2 cut(s)	93, 257
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	65, 511
BfaI	CTAG	2 cut(s)	75, 147
BfuAI	ACCTGC	1 cut(s)	182
BfuI	GTATCC	2 cut(s)	93, 257
BisI	GCNGC	2 cut(s)	663, 693
BlsI	GCNGC	2 cut(s)	664, 694
BmeT110I	CYCGRG	1 cut(s)	137
BmsI	GCATC	3 cut(s)	178, 217, 472
BpiI	GAAGAC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	327
BsaWI	WCCGGW	3 cut(s)	94, 260, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 302
Bse1I	ACTGG	2 cut(s)	419, 506
Bse21I	CCTNAGG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	607
BseGI	GGATG	2 cut(s)	177, 307
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	191, 302
BseMII	CTCAG	3 cut(s)	104, 288, 399
BseNI	ACTGG	2 cut(s)	419, 506
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	649, 679
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	122, 413
BsiHKAI	GWGCWC	2 cut(s)	387, 648
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	95, 261, 608
BslFI	GGGAC	2 cut(s)	45, 592
BslI	CCNNNNNNNGG	2 cut(s)	191, 302
BsmAI	GTCTC	2 cut(s)	65, 511
BsmFI	GGGAC	2 cut(s)	45, 592
BsnI	GGCC	2 cut(s)	122, 413
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	387, 648
Bsp13I	TCCGGA	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	328, 343, 708
BspACI	CCGC	2 cut(s)	86, 485
BspANI	GGCC	2 cut(s)	122, 413
BspCNI	CTCAG	3 cut(s)	105, 289, 400
BspEI	TCCGGA	1 cut(s)	607
BspFNI	CGCG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	716
BsrI	ACTGG	2 cut(s)	419, 506
BssMI	GATC	3 cut(s)	328, 343, 708
BssSI	CACGAG	1 cut(s)	672
Bst2BI	CACGAG	1 cut(s)	672
Bst4CI	ACNGT	4 cut(s)	583, 633, 715, 729
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	130, 660, 690
BstDEI	CTNAG	3 cut(s)	113, 297, 408
BstF5I	GGATG	2 cut(s)	177, 307
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	3 cut(s)	331, 346, 711
BstMAI	GTCTC	2 cut(s)	65, 511
BstMBI	GATC	3 cut(s)	328, 343, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 188
BstNSI	RCATGY	1 cut(s)	692
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	649, 679
BstV2I	GAAGAC	1 cut(s)	242
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	2 cut(s)	93, 257
BsuRI	GGCC	2 cut(s)	122, 413
BtsCI	GGATG	2 cut(s)	177, 307
BtsI	GCAGTG	2 cut(s)	123, 279
BtsIMutI	CAGTG	2 cut(s)	123, 279
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	3 cut(s)	130, 660, 690
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	4 cut(s)	208, 446, 512, 689
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	3 cut(s)	113, 297, 408
DpnI	GATC	3 cut(s)	330, 345, 710
DpnII	GATC	3 cut(s)	328, 343, 708
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Ecl136II	GAGCTC	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	554
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	648
FaeI	CATG	4 cut(s)	211, 449, 515, 692
FaqI	GGGAC	2 cut(s)	45, 592
FatI	CATG	4 cut(s)	207, 445, 511, 688
FauNDI	CATATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	602
Fnu4HI	GCNGC	2 cut(s)	663, 693
FokI	GGATG	2 cut(s)	184, 314
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	2 cut(s)	663, 693
FspBI	CTAG	2 cut(s)	75, 147
GluI	GCNGC	2 cut(s)	663, 693
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	122, 413
HapII	CCGG	3 cut(s)	95, 261, 608
Hin1II	CATG	4 cut(s)	211, 449, 515, 692
HincII	GTYRAC	2 cut(s)	496, 603
HindII	GTYRAC	2 cut(s)	496, 603
HinfI	GANTC	3 cut(s)	404, 599, 604
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	3 cut(s)	95, 261, 608
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	3 cut(s)	92, 496, 603
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	4 cut(s)	296, 332, 425, 608
Hpy8I	GTNNAC	3 cut(s)	92, 496, 603
HpyAV	CCTTC	3 cut(s)	22, 449, 529
HpyCH4III	ACNGT	4 cut(s)	583, 633, 715, 729
HpyCH4V	TGCA	4 cut(s)	40, 182, 191, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 188
HpyF3I	CTNAG	3 cut(s)	113, 297, 408
Hsp92II	CATG	4 cut(s)	211, 449, 515, 692
Kpn2I	TCCGGA	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	343
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	328, 343, 708
LmnI	GCTCC	4 cut(s)	4, 97, 109, 643
Lsp1109I	GCAGC	2 cut(s)	649, 679
LweI	GCATC	3 cut(s)	178, 217, 472
MaeI	CTAG	2 cut(s)	75, 147
MalI	GATC	3 cut(s)	330, 345, 710
MboI	GATC	3 cut(s)	328, 343, 708
MboII	GAAGA	3 cut(s)	247, 263, 628
MhlI	GDGCHC	2 cut(s)	387, 648
MluCI	AATT	3 cut(s)	390, 505, 681
MlyI	GAGTC	2 cut(s)	598, 608
MnlI	CCTC	7 cut(s)	112, 287, 292, 403, 407, 536, 569
MroI	TCCGGA	1 cut(s)	607
MseI	TTAA	2 cut(s)	200, 495
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	3 cut(s)	95, 261, 608
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	173, 188
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	3 cut(s)	328, 343, 708
NlaIII	CATG	4 cut(s)	211, 449, 515, 692
NspI	RCATGY	1 cut(s)	692
PaeI	GCATGC	1 cut(s)	692
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	664, 694
PleI	GAGTC	2 cut(s)	598, 607
PpsI	GAGTC	2 cut(s)	598, 607
Psp124BI	GAGCTC	1 cut(s)	648
PspFI	CCCAGC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	450
SacI	GAGCTC	1 cut(s)	648
SalI	GTCGAC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	200, 495
SatI	GCNGC	2 cut(s)	663, 693
Sau3AI	GATC	3 cut(s)	328, 343, 708
SchI	GAGTC	2 cut(s)	598, 608
SduI	GDGCHC	2 cut(s)	387, 648
SfaNI	GCATC	3 cut(s)	178, 217, 472
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	3 cut(s)	390, 505, 681
SsiI	CCGC	2 cut(s)	86, 485
SspMI	CTAG	2 cut(s)	75, 147
SstI	GAGCTC	1 cut(s)	648
TaaI	ACNGT	4 cut(s)	583, 633, 715, 729
TaqI	TCGA	3 cut(s)	26, 480, 602
TasI	AATT	3 cut(s)	390, 505, 681
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	2 cut(s)	200, 495
Tru9I	TTAA	2 cut(s)	200, 495
TscAI	CASTG	2 cut(s)	130, 286
TseI	GCWGC	2 cut(s)	662, 692
TspDTI	ATGAA	3 cut(s)	462, 468, 539
TspRI	CASTG	2 cut(s)	130, 286
XapI	RAATTY	1 cut(s)	681
XceI	RCATGY	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	602
XspI	CTAG	2 cut(s)	75, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.