Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

85381514 .. 85381830

Gene Structure 317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGTACTGCACCAGATGCAGGTCAGTTAATGACCATGCTATTGAAGTTAGTAGATGCAAAGAAGACGATTGAAGTTGGTGTTTTTACTGGATACTCTCTTCTCCTCGCTGCTCTTAAAATTCCTGAGGATGGCAAGATTGTAGCCATAGATGTAGATCGTGAGCCATATGATCAAATAGGATTTCCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGACCTCATTGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

79

Amino Acids

8.55

Weight (kDa)

4.93

Isoelectric Point (pI)

20.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	1 - 79	1.6e-28	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	20, 131
AgsI	TTSAA	3 cut(s)	46, 74, 233
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	120
AxyI	CCTNAGG	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmsI	GCATC	2 cut(s)	7, 46
BpiI	GAAGAC	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 131
Bse1I	ACTGG	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	156
BseGI	GGATG	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	20, 131
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	20, 131
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	157, 172
BspCNI	CTCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	157, 172
Bst6I	CTCTTC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	126, 237
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	160, 175
BstMBI	GATC	2 cut(s)	157, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	3 cut(s)	146, 166, 203
CviKI_1	RGCY	3 cut(s)	146, 166, 203
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	126, 237
DpnI	GATC	2 cut(s)	159, 174
DpnII	GATC	2 cut(s)	157, 172
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco81I	CCTNAGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	40
FaiI	YATR	5 cut(s)	38, 149, 169, 171, 194
FatI	CATG	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	125, 161
HpyCH4V	TGCA	3 cut(s)	11, 20, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	126, 237
Hsp92II	CATG	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	157, 172
LpnPI	CCDG	5 cut(s)	6, 27, 75, 138, 189
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	7, 46
MalI	GATC	2 cut(s)	159, 174
MboI	GATC	2 cut(s)	157, 172
MboII	GAAGA	2 cut(s)	76, 92
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	120, 219
MnlI	CCTC	3 cut(s)	116, 121, 236
MseI	TTAA	2 cut(s)	29, 117
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	2 cut(s)	157, 172
NlaIII	CATG	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	29, 117
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	157, 172
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	3 cut(s)	25, 205, 228
SfaNI	GCATC	2 cut(s)	7, 46
SgeI	CNNG	9 cut(s)	26, 33, 49, 102, 119, 137, 148, 173, 216
Sse9I	AATT	2 cut(s)	120, 219
TasI	AATT	2 cut(s)	120, 219
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	29, 117
Tru9I	TTAA	2 cut(s)	29, 117
TseI	GCWGC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.