Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

3890653 .. 3891690

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGCACAGTGCCAAAAAGGTCCGGAATCTAGAGACGAAGGGACTGCTGCAGAGTGACGAGTTATATCAGGTTACAACGCCGGCTGGGATGGCTACGGCACCAGATGCAGGTCAGTTAATGGCCATGCTGTTGAAGCTAGTAGATGCAAAGAAAACGATTGAAGTTGGCGTTTTCACCGGATACTCTCTCCTCCTCACTGCTCTTACAATTCCCGACGATGGCAAGATTGTAGCCATAGATGTGAATCGTGAGACGTATGAGCAAATAGGGCTTCCAATCATAAAGAAAGCCGGTGTTGAGCACAAAATCGACTTCATTGAATCCCAGGCCCTACCGGTTCTTGATAAGCTACTAGAAAATCATGAAAACGAAGGAAGTTTCGACTTTGCTTTCATTGATGCCGACAAGCTCAACTACTGGAACTACCATGAGATGTTAATGAAGCTGTTGAAGGTGGGTGGTATAGTTGTCTATGATAACACCCTCTGGGGAGGAACGGGTGTAATCCCTGATGAGTTGATTCCGGAGTTCATGAAACCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

183

Amino Acids

20.16

Weight (kDa)

4.81

Isoelectric Point (pI)

18.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	100
AccIII	TCCGGA	2 cut(s)	24, 526
AcoI	YGGCCR	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	110, 221
AgeI	ACCGGT	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	136, 164, 323, 454
AjnI	CCWGG	2 cut(s)	327, 541
AluBI	AGCT	4 cut(s)	139, 352, 412, 448
AluI	AGCT	4 cut(s)	139, 352, 412, 448
Alw21I	GWGCWC	2 cut(s)	9, 306
Alw26I	GTCTC	2 cut(s)	29, 248
Aor13HI	TCCGGA	2 cut(s)	24, 526
AoxI	GGCC	2 cut(s)	123, 330
ApeKI	GCWGC	1 cut(s)	49
AsiGI	ACCGGT	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	22, 331
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	9, 306
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	2 cut(s)	85, 215
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	329, 543
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	29, 248
BfaI	CTAG	3 cut(s)	32, 140, 356
BfmI	CTRYAG	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	2 cut(s)	329, 543
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 331
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	329, 543
BmsI	GCATC	3 cut(s)	97, 136, 391
BsaBI	GATNNNNATC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	4 cut(s)	24, 179, 337, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 221
Bse118I	RCCGGY	3 cut(s)	82, 293, 337
Bse1I	ACTGG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	246
BseAI	TCCGGA	2 cut(s)	24, 526
BseBI	CCWGG	2 cut(s)	329, 543
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	110, 221
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	182, 185
BseXI	GCAGC	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	125, 332
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	337
BsiHKAI	GWGCWC	2 cut(s)	9, 306
BsiSI	CCGG	6 cut(s)	25, 83, 180, 294, 338, 527
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	110, 221
BsmAI	GTCTC	2 cut(s)	29, 248
BsmBI	CGTCTC	2 cut(s)	29, 248
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	125, 332
Bsp1286I	GDGCHC	2 cut(s)	9, 306
Bsp13I	TCCGGA	2 cut(s)	24, 526
BspANI	GGCC	2 cut(s)	125, 332
BspEI	TCCGGA	2 cut(s)	24, 526
BspHI	TCATGA	2 cut(s)	364, 534
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	100
BsrFI	RCCGGY	3 cut(s)	82, 293, 337
BsrI	ACTGG	1 cut(s)	425
BssAI	RCCGGY	3 cut(s)	82, 293, 337
BssECI	CCNNGG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	329, 543
Bst4CI	ACNGT	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	96
BstMAI	GTCTC	2 cut(s)	29, 248
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 107, 136, 271
BstNI	CCWGG	2 cut(s)	329, 543
BstSCI	CCNGG	2 cut(s)	327, 541
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	125, 332
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	16, 198
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	2 cut(s)	364, 534
Cfr10I	RCCGGY	3 cut(s)	82, 293, 337
Cfr13I	GGNCC	2 cut(s)	22, 331
CspAI	ACCGGT	1 cut(s)	337
CviAII	CATG	4 cut(s)	127, 365, 431, 535
EaeI	YGGCCR	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	327, 541
Esp3I	CGTCTC	2 cut(s)	29, 248
FaeI	CATG	4 cut(s)	130, 368, 434, 538
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	126, 364, 430, 534
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	3 cut(s)	32, 140, 356
GluI	GCNGC	1 cut(s)	50
GsaI	CCCAGC	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	125, 332
HapII	CCGG	6 cut(s)	25, 83, 180, 294, 338, 527
Hin1II	CATG	4 cut(s)	130, 368, 434, 538
HinfI	GANTC	4 cut(s)	28, 247, 323, 523
HpaII	CCGG	6 cut(s)	25, 83, 180, 294, 338, 527
HphI	GGTGA	1 cut(s)	169
Hpy188III	TCNNGA	8 cut(s)	25, 32, 215, 251, 344, 365, 527, 535
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	34, 368, 448
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	52, 110, 149
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 107, 136, 271
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	4 cut(s)	130, 368, 434, 538
Kpn2I	TCCGGA	2 cut(s)	24, 526
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	3 cut(s)	97, 136, 391
MaeI	CTAG	3 cut(s)	32, 140, 356
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	2 cut(s)	56, 73
MhlI	GDGCHC	2 cut(s)	9, 306
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	210
MluNI	TGGCCA	1 cut(s)	125
MnlI	CCTC	4 cut(s)	203, 206, 488, 497
Mox20I	TGGCCA	1 cut(s)	125
MroI	TCCGGA	2 cut(s)	24, 526
MroNI	GCCGGC	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	2 cut(s)	119, 440
MslI	CAYNNNNRTG	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	6 cut(s)	25, 83, 180, 294, 338, 527
MspR9I	CCNGG	2 cut(s)	329, 543
MvaI	CCWGG	2 cut(s)	329, 543
MwoI	GCNNNNNNNGC	4 cut(s)	92, 107, 136, 271
NaeI	GCCGGC	1 cut(s)	84
NgoMIV	GCCGGC	1 cut(s)	82
NlaIII	CATG	4 cut(s)	130, 368, 434, 538
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	56
PagI	TCATGA	2 cut(s)	364, 534
PdiI	GCCGGC	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	28, 247, 323, 523
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	327, 541
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	2 cut(s)	327, 541
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	22, 331
PstI	CTGCAG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	119, 440
SatI	GCNGC	1 cut(s)	50
Sau96I	GGNCC	2 cut(s)	22, 331
ScrFI	CCNGG	2 cut(s)	329, 543
SduI	GDGCHC	2 cut(s)	9, 306
SetI	ASST	9 cut(s)	24, 75, 115, 141, 260, 354, 414, 450, 459
SfaNI	GCATC	3 cut(s)	97, 136, 391
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	210
SspMI	CTAG	3 cut(s)	32, 140, 356
StyD4I	CCNGG	2 cut(s)	327, 541
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	312, 384
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	4 cut(s)	28, 247, 323, 523
Tru1I	TTAA	2 cut(s)	119, 440
Tru9I	TTAA	2 cut(s)	119, 440
TscAI	CASTG	2 cut(s)	16, 205
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	5 cut(s)	307, 381, 385, 458, 523
TspRI	CASTG	2 cut(s)	16, 205
VpaK11BI	GGWCC	1 cut(s)	22
XbaI	TCTAGA	1 cut(s)	31
XspI	CTAG	3 cut(s)	32, 140, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.