Rh2BG075200

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003495
Physical Location & Seq
Reverse (-)
5669256 .. 5671385
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG075200.1

Sequence Viewer

Length: 357 bp
ATGGAGCAGAACAAGAAAAAGGTATCGAAGGGACTATTGCAGAGTGATGACTTGTATCAGTATATCTTGGAGACTAGCGTGTATCCGCGTGAACCGGAGCCTCTCAAGGAGCTGAGAGAGGCCACTGCCAGCCACCCCGAGGCTGGGATGGCTACTGCACCAGATGCAGGTCAGTTAATGACCATGCTATTGAAGTTAGTAGATGCAAAGAAGACGATTGAAGTAGGAGTTTTTACCGGATACTCTCTTCTCCTCACTGCTCTTACAACTCCTGAGGATGGCAAGGAGTCTGTTCTTCATTCCAATGAGTTTTTGACCTTGAAGTTCACTTGCAATGATGATGTTGTTTTGAATTAA

Protein Analysis

118

Amino Acids

13.07

Weight (kDa)

4.85

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 24 - 97 2.7e-22 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccII CGCG 1 cut(s) 88
AciI CCGC 1 cut(s) 86
AfiI CCNNNNNNNGG 5 cut(s) 139, 143, 144, 167, 278
AgsI TTSAA 4 cut(s) 193, 221, 322, 352
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 137
AxyI CCTNAGG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 218
BccI CCATC 2 cut(s) 142, 272
BciVI GTATCC 2 cut(s) 93, 233
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 158
BfuI GTATCC 2 cut(s) 93, 233
BmeT110I CYCGRG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 99
BmsI GCATC 2 cut(s) 154, 193
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 2 cut(s) 94, 236
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 143, 144, 167, 278
Bse21I CCTNAGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 2 cut(s) 153, 283
BseLI CCNNNNNNNGG 5 cut(s) 139, 143, 144, 167, 278
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 104, 264
BseRI GAGGAG 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 2 cut(s) 95, 237
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 5 cut(s) 139, 143, 144, 167, 278
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 137
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 105, 265
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 113, 273
BstF5I GGATG 2 cut(s) 153, 283
BstFNI CGCG 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 65
BstMWI GCNNNNNNNGC 2 cut(s) 149, 164
BstUI CGCG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 273
BsuI GTATCC 2 cut(s) 93, 233
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 2 cut(s) 153, 283
BtsI GCAGTG 2 cut(s) 123, 255
BtsIMutI CAGTG 2 cut(s) 123, 255
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 130
CviAII CATG 1 cut(s) 184
CviJI RGCY 6 cut(s) 100, 112, 122, 132, 143, 152
CviKI_1 RGCY 6 cut(s) 100, 112, 122, 132, 143, 152
DdeI CTNAG 2 cut(s) 113, 273
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 137
FaeI CATG 1 cut(s) 187
FaiI YATR 2 cut(s) 63, 185
FaqI GGGAC 1 cut(s) 45
FatI CATG 1 cut(s) 183
FokI GGATG 2 cut(s) 160, 290
FspBI CTAG 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 122
HapII CCGG 2 cut(s) 95, 237
Hin1II CATG 1 cut(s) 187
HinfI GANTC 1 cut(s) 287
HpaII CCGG 2 cut(s) 95, 237
Hpy166II GTNNAC 2 cut(s) 92, 327
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 92, 327
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 40, 158, 167, 206, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 164
HpyF3I CTNAG 2 cut(s) 113, 273
Hsp92II CATG 1 cut(s) 187
LmnI GCTCC 3 cut(s) 4, 97, 109
LpnPI CCDG 7 cut(s) 108, 129, 142, 153, 174, 250, 285
LweI GCATC 2 cut(s) 154, 193
MaeI CTAG 1 cut(s) 75
MboII GAAGA 3 cut(s) 223, 239, 287
MluCI AATT 1 cut(s) 352
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 5 cut(s) 111, 112, 133, 263, 268
MseI TTAA 2 cut(s) 176, 355
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 2 cut(s) 95, 237
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 149, 164
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 99
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 176, 355
SchI GAGTC 1 cut(s) 296
SetI ASST 4 cut(s) 24, 114, 172, 320
SfaNI GCATC 2 cut(s) 154, 193
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 1 cut(s) 352
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 75
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 352
Tru1I TTAA 2 cut(s) 176, 355
Tru9I TTAA 2 cut(s) 176, 355
TscAI CASTG 2 cut(s) 130, 262
TspDTI ATGAA 1 cut(s) 287
TspRI CASTG 2 cut(s) 130, 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.