Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

3612632 .. 3614498

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGGAGCAACAAGAGAAAGGTATTGAAGGGACTATTGCAGAGTGATGACTTGTATGAGTACATCTTGGAGACTAGCGTGTATCCGCTCGAACCGGAGCCTCTCAAGGAGCTGAGAGAAGCCACTGCCAGCCATCCCTGGGCTGGGATGGGAACTGCCCCAGATGCCGGCCAGTTGATGACCATGCTGTTGGGGCTAGTGGATGCAAAGAAGACGATTGAAGTTGGAGTTTTTACCGGATACTCTCTTCTCCTCACTGCTCTTACACTTCCTGAGGATGGCAAGATTGTAGCCATAGATGCACATCGTGAGCCATATGATCAAATCGGATTACCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGAACTCATTGAATCTGAGGCCCTGCCTGTTCTTGATAAGCTATTGGAACAACACGAAAATGAAGGAAGTTTCGACTTTGCTTTTGTGGATGCGGATAAGGAAAATTATTGTAATTACCATGAGAGGATAATGAAGCTGGTGAAGGTGGGAGGTATAGCTGTGTATGATAATACTCTTTGGGGAGGGTCAGTTGCAATGCCTATTAAGTATATACCAGAAGGAAGAAAACCAGGCAGACAATCTATGATAGTGCTCAACAAGTTACTTGCTGCTGATACTCGTGTCCAGATTTCACATGCTTCTGTGGGTGATGGGATCACAATTTGTAGGCGACTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

237

Amino Acids

26.08

Weight (kDa)

5.54

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	7.5e-75	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	2.5e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	88
AciI	CCGC	2 cut(s)	86, 461
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	169
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
AgsI	TTSAA	4 cut(s)	28, 221, 371, 380
AjnI	CCWGG	2 cut(s)	137, 598
AluBI	AGCT	5 cut(s)	112, 350, 409, 505, 527
AluI	AGCT	5 cut(s)	112, 350, 409, 505, 527
Alw21I	GWGCWC	2 cut(s)	363, 624
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	2 cut(s)	169, 387
ApeKI	GCWGC	1 cut(s)	638
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspS9I	GGNCC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	520, 689
AxyI	CCTNAGG	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	363, 624
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	4 cut(s)	141, 142, 272, 674
BciT130I	CCWGG	2 cut(s)	139, 600
BciVI	GTATCC	2 cut(s)	93, 233
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	75, 197
BfuI	GTATCC	2 cut(s)	93, 233
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
Bme1390I	CCNGG	2 cut(s)	139, 600
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	139, 600
BmsI	GCATC	4 cut(s)	154, 193, 289, 448
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	137, 138
BsaWI	WCCGGW	2 cut(s)	94, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	139, 600
BseDI	CCNNGG	2 cut(s)	137, 138
BseGI	GGATG	5 cut(s)	133, 153, 208, 283, 463
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	104, 264, 375
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	625
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	2 cut(s)	171, 389
BsiHKAI	GWGCWC	2 cut(s)	363, 624
BsiSI	CCGG	3 cut(s)	95, 168, 237
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	5 cut(s)	139, 143, 144, 167, 278
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	171, 389
Bsp1286I	GDGCHC	2 cut(s)	363, 624
Bsp143I	GATC	2 cut(s)	319, 684
BspACI	CCGC	2 cut(s)	86, 461
BspANI	GGCC	2 cut(s)	171, 389
BspCNI	CTCAG	3 cut(s)	105, 265, 376
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	692
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	2 cut(s)	319, 684
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	139, 600
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	130, 169
BstDEI	CTNAG	3 cut(s)	113, 273, 384
BstF5I	GGATG	5 cut(s)	133, 153, 208, 283, 463
BstKTI	GATC	2 cut(s)	322, 687
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	319, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 193, 299
BstNI	CCWGG	2 cut(s)	139, 600
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	2 cut(s)	137, 598
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	93, 233
BsuRI	GGCC	2 cut(s)	171, 389
BtsCI	GGATG	5 cut(s)	133, 153, 208, 283, 463
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	3 cut(s)	123, 255, 706
Cac8I	GCNNGC	2 cut(s)	130, 169
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	184, 488, 665
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	113, 273, 384
DpnI	GATC	2 cut(s)	321, 686
DpnII	GATC	2 cut(s)	319, 684
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	137, 598
FaeI	CATG	3 cut(s)	187, 491, 668
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	183, 487, 664
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	5 cut(s)	120, 160, 215, 290, 470
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	2 cut(s)	75, 197
GluI	GCNGC	1 cut(s)	639
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	171, 389
HapII	CCGG	3 cut(s)	95, 168, 237
Hin1II	CATG	3 cut(s)	187, 491, 668
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	3 cut(s)	95, 168, 237
HphI	GGTGA	2 cut(s)	520, 689
Hpy188I	TCNGA	2 cut(s)	329, 385
Hpy188III	TCNNGA	4 cut(s)	272, 308, 401, 655
HpyAV	CCTTC	4 cut(s)	22, 425, 505, 581
HpyCH4V	TGCA	5 cut(s)	40, 206, 302, 563, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 193, 299
HpyF3I	CTNAG	3 cut(s)	113, 273, 384
Hsp92II	CATG	3 cut(s)	187, 491, 668
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	319, 684
LmnI	GCTCC	3 cut(s)	6, 97, 109
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	4 cut(s)	154, 193, 289, 448
MaeI	CTAG	2 cut(s)	75, 197
MaeIII	GTNAC	1 cut(s)	630
MalI	GATC	2 cut(s)	321, 686
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	319, 684
MboII	GAAGA	3 cut(s)	223, 239, 603
MhlI	GDGCHC	2 cut(s)	363, 624
MluCI	AATT	4 cut(s)	366, 472, 481, 690
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	7 cut(s)	111, 263, 268, 379, 486, 512, 545
MroNI	GCCGGC	1 cut(s)	167
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	3 cut(s)	95, 168, 237
MspR9I	CCNGG	2 cut(s)	139, 600
MvaI	CCWGG	2 cut(s)	139, 600
MwoI	GCNNNNNNNGC	3 cut(s)	164, 193, 299
NaeI	GCCGGC	1 cut(s)	169
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	2 cut(s)	319, 684
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	187, 491, 668
NlaIV	GGNNCC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	668
PasI	CCCWGGG	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	640
Psp6I	CCWGG	2 cut(s)	137, 598
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	137, 598
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	388
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	2 cut(s)	319, 684
Sau96I	GGNCC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	139, 600
SduI	GDGCHC	2 cut(s)	363, 624
SetI	ASST	8 cut(s)	24, 114, 352, 411, 507, 516, 523, 529
SfaNI	GCATC	4 cut(s)	154, 193, 289, 448
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	366, 472, 481, 690
SsiI	CCGC	2 cut(s)	86, 461
SspMI	CTAG	2 cut(s)	75, 197
StyD4I	CCNGG	2 cut(s)	137, 598
TaqI	TCGA	2 cut(s)	90, 441
TasI	AATT	4 cut(s)	366, 472, 481, 690
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	2 cut(s)	130, 262
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	2 cut(s)	444, 515
TspRI	CASTG	2 cut(s)	130, 262
XceI	RCATGY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	75, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.