Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Reverse (-)

4748047 .. 4748916

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016207

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGCACAACACGAAAAAGGTATCAAAGGGACTATTGCAGAATGATGAATTGTATCCGTATATCTTGGAGACTAGTGTGTATCCGCGTGAACCGGAGCTTCTAAAGGAGCTTAGGGATGCCACTGCCAGCCACCCCACGGCTGAGATGGCTACTGCACCAGATGCAGGCCAGTTGATGACCATGCTGTTGGGGCTAGTAGATGCAAAGAAGACGATTGAAGTTGGAGTTTTTACAGGATACTCTCTTCTCCTCACTGCTCTTGCAATTCCTGAGGATGGCAAGATTGTAGCCATAGATGTAAATCGTGAGGCATATGATCAAATAGGATTTCCAATTATAAAGAAGGCTGGTGTTGAGCACAAATTTGACCTCATTGAATCTGAGGCCCTGCCAGTTCTTGACAAAATTGTGGCGATGGGATCACAATTTGTAGGCGACTATACTGATTTCTTCCTGAAAGTGAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

158

Amino Acids

17.3

Weight (kDa)

4.85

Isoelectric Point (pI)

26.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 141	6.7e-40	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AccII	CGCG	1 cut(s)	88
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	1 cut(s)	365
AfiI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
AgsI	TTSAA	2 cut(s)	221, 380
AhlI	ACTAGT	1 cut(s)	74
AluBI	AGCT	2 cut(s)	100, 112
AluI	AGCT	2 cut(s)	100, 112
Alw21I	GWGCWC	2 cut(s)	9, 363
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	2 cut(s)	169, 387
ApoI	RAATTY	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	388
AxyI	CCTNAGG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	9, 363
BccI	CCATC	3 cut(s)	142, 272, 412
BceAI	ACGGC	1 cut(s)	156
BciVI	GTATCC	3 cut(s)	66, 93, 233
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	65
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 197
BfuI	GTATCC	3 cut(s)	66, 93, 233
BmgT120I	GGNCC	1 cut(s)	388
BmsI	GCATC	3 cut(s)	109, 154, 193
BpiI	GAAGAC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 167, 278
Bse1I	ACTGG	2 cut(s)	172, 395
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	124, 283
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BseMII	CTCAG	3 cut(s)	135, 264, 375
BseNI	ACTGG	2 cut(s)	172, 395
BseRI	GAGGAG	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	171, 389
BsiHKAI	GWGCWC	2 cut(s)	9, 363
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	139, 167, 278
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	171, 389
Bsp1286I	GDGCHC	2 cut(s)	9, 363
Bsp143I	GATC	2 cut(s)	319, 422
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	171, 389
BspCNI	CTCAG	3 cut(s)	136, 265, 376
BspFNI	CGCG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	172, 395
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	2 cut(s)	319, 422
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	130, 169
BstDEI	CTNAG	4 cut(s)	113, 144, 273, 384
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	124, 283
BstFNI	CGCG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	322, 425
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	2 cut(s)	319, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
BstUI	CGCG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	3 cut(s)	66, 93, 233
BsuRI	GGCC	2 cut(s)	171, 389
BtgI	CCRYGG	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	2 cut(s)	124, 283
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	2 cut(s)	123, 255
Cac8I	GCNNGC	2 cut(s)	130, 169
Cfr13I	GGNCC	1 cut(s)	388
CviAII	CATG	1 cut(s)	184
DdeI	CTNAG	4 cut(s)	113, 144, 273, 384
DpnI	GATC	2 cut(s)	321, 424
DpnII	GATC	2 cut(s)	319, 422
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	388
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	63, 185, 296, 316, 318, 341, 444
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	319
FokI	GGATG	2 cut(s)	131, 290
FspBI	CTAG	2 cut(s)	75, 197
HaeIII	GGCC	2 cut(s)	171, 389
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	4 cut(s)	272, 308, 401, 457
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	5 cut(s)	40, 158, 167, 206, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
HpyF3I	CTNAG	4 cut(s)	113, 144, 273, 384
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	319, 422
LmnI	GCTCC	3 cut(s)	4, 97, 109
LweI	GCATC	3 cut(s)	109, 154, 193
MaeI	CTAG	2 cut(s)	75, 197
MalI	GATC	2 cut(s)	321, 424
MboI	GATC	2 cut(s)	319, 422
MboII	GAAGA	3 cut(s)	223, 239, 445
MhlI	GDGCHC	2 cut(s)	9, 363
MluCI	AATT	6 cut(s)	50, 267, 336, 365, 408, 428
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	263, 268, 304, 379, 383
MspI	CCGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	149, 164, 193
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	2 cut(s)	319, 422
NlaIII	CATG	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	388
Sau3AI	GATC	2 cut(s)	319, 422
Sau96I	GGNCC	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	9, 363
SetI	ASST	4 cut(s)	24, 102, 114, 375
SfaNI	GCATC	3 cut(s)	109, 154, 193
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	6 cut(s)	50, 267, 336, 365, 408, 428
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	75, 197
TasI	AATT	6 cut(s)	50, 267, 336, 365, 408, 428
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	2 cut(s)	130, 262
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	130, 262
XapI	RAATTY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	2 cut(s)	75, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.