Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003495

Physical Location & Seq

Genomic Coordinates Forward (+)

7023959 .. 7025098

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46894

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAATTGTATCGGGTACACTTATATCTTGGAGACTAGTGTGTACCCGCGTGAACCAGAGCTTCTCAAGGAGCTTAGGGATGCCACTGTCAGCCACCCCAGGGCTGAGATGGCTACTGCACCAGATGCAGGCCAGTTGATGACCATGCTGTTGAGGCTAGTAGATGCAAAGAAGATGATTGAAGTTGGAGTTTGTACAGGATACTCTCTTCTCCTCACTGCTCTTGCAATTCCTGAGGATGGCAAGAAAACCTTATTGCTGATTGTAGCCATAGATGTAAACCGTGAGCCATATGATCAAATAGGATTTCCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGATCTCATTGAATCTGAGGCGCTGCCAGTTCTTGATAAGCTATTGGAACAGCATGAAAATGAAGGAAGTTTTGACTTTGCTTTTGTCGATGCGGACAAGGTTAACTATTGGAATTACCATGAGAGACTAATGAAGGTGGGAGGTATAGCTGTGTATGATAACACTCTGTGGGGAGGGTCAGTTGTAATGCCTATTGTGTCGACTCCAGAACACATGAAACCAGGCAGACAGTATACCATAGAGCTCAACAAGTTACTTGCTGCTGATACTCGTGTCCAAATTTCGCATGCTTCTTTGGGTGATGGGATCACAATTTGTAGGCGACTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0042409 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_3

Protein Analysis

225

Amino Acids

25.16

Weight (kDa)

5.28

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	11 - 224	2.5e-68	O-methyltransferase
Methyltransf_24	PF13578	60 - 169	4.8e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26220
fragaria_vesca	FvH4_1g06840 FvH4_1g06841 FvH4_1g06841
malus_domestica	MD02G1073100.v1.1 MD02G1073400.v1.1
prunus_persica	Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1 Prupe.7G214400_v2.0.a1
pyrus_communis	pycom02g05730 pycom02g05760 pycom02g05770
rosa_chinensis	RchiOBHm_Chr2g0092621 RchiOBHm_Chr2g0092631 RchiOBHm_Chr2g0093901 RchiOBHm_Chr2g0093911
rosa_laevigata	RLG00000016207 RLG00000016329
rosa_multiflora	Rmu_co8197646.1_g000001 Rmu_co8235837.1_g000001 Rmu_co8321945.1_g000001 Rmu_sc0003027.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147620 Rroxscaffold_2G00147650 Rroxscaffold_2G00148920
rosa_rugosa	Rorug02G0028200 Rorug02G0028300
rosa_samantha	Rh2AG074000 Rh2AG074100 Rh2BG075100 Rh2BG075200 Rh2CG076700 Rh2CG076800
rosa_wichuraiana	Rw2G005890 Rw2G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	545, 578
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	47, 437
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	624
AdeI	CACNNNGTG	1 cut(s)	513
AfaI	GTAC	3 cut(s)	17, 44, 196
AfiI	CCNNNNNNNGG	3 cut(s)	100, 128, 239
AgsI	TTSAA	2 cut(s)	182, 356
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	98, 565
AluBI	AGCT	6 cut(s)	61, 73, 326, 385, 494, 589
AluI	AGCT	6 cut(s)	61, 73, 326, 385, 494, 589
Alw21I	GWGCWC	2 cut(s)	339, 591
Alw26I	GTCTC	2 cut(s)	26, 463
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	367, 605
ApoI	RAATTY	1 cut(s)	624
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AspLEI	GCGC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	656
AxyI	CCTNAGG	1 cut(s)	234
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BanII	GRGCYC	1 cut(s)	591
BauI	CACGAG	1 cut(s)	615
Bbv12I	GWGCWC	2 cut(s)	339, 591
BbvI	GCAGC	2 cut(s)	354, 592
BccI	CCATC	3 cut(s)	103, 233, 641
BciT130I	CCWGG	2 cut(s)	100, 567
BciVI	GTATCC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	26, 463
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	2 cut(s)	36, 158
BfoI	RGCGCY	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	194
BisI	GCNGC	2 cut(s)	368, 606
BlsI	GCNGC	2 cut(s)	369, 607
Bme1390I	CCNGG	2 cut(s)	100, 567
BmrFI	CCNGG	2 cut(s)	100, 567
BmsI	GCATC	4 cut(s)	70, 115, 154, 424
BpmI	CTGGAG	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	98, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 128, 239
Bse1I	ACTGG	2 cut(s)	133, 371
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	100, 567
BseDI	CCNNGG	2 cut(s)	98, 99
BseGI	GGATG	2 cut(s)	85, 244
BseLI	CCNNNNNNNGG	3 cut(s)	100, 128, 239
BseMII	CTCAG	3 cut(s)	96, 225, 351
BseNI	ACTGG	2 cut(s)	133, 371
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	2 cut(s)	354, 592
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	339, 591
BslI	CCNNNNNNNGG	3 cut(s)	100, 128, 239
BsmAI	GTCTC	2 cut(s)	26, 463
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	339, 591
Bsp1407I	TGTACA	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	295, 346, 651
BspACI	CCGC	2 cut(s)	47, 437
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	3 cut(s)	97, 226, 352
BspFNI	CGCG	1 cut(s)	49
BspPI	GGATC	1 cut(s)	659
BsrGI	TGTACA	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	133, 371
BssECI	CCNNGG	2 cut(s)	98, 99
BssMI	GATC	3 cut(s)	295, 346, 651
BssNAI	GTATAC	1 cut(s)	579
BssSI	CACGAG	1 cut(s)	615
Bst1107I	GTATAC	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	100, 567
Bst4CI	ACNGT	3 cut(s)	88, 284, 576
Bst6I	CTCTTC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	130, 633
BstDEI	CTNAG	4 cut(s)	74, 105, 234, 360
BstF5I	GGATG	2 cut(s)	85, 244
BstFNI	CGCG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	3 cut(s)	298, 349, 654
BstMAI	GTCTC	2 cut(s)	26, 463
BstMBI	GATC	3 cut(s)	295, 346, 651
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 125, 154
BstNI	CCWGG	2 cut(s)	100, 567
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	98, 565
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	354, 592
BstZ17I	GTATAC	1 cut(s)	579
Bsu36I	CCTNAGG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	85, 244
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	84, 216
Cac8I	GCNNGC	2 cut(s)	130, 633
CfoI	GCGC	1 cut(s)	367
Csp6I	GTAC	3 cut(s)	16, 43, 195
CviAII	CATG	5 cut(s)	145, 398, 464, 559, 632
CviQI	GTAC	3 cut(s)	16, 43, 195
DdeI	CTNAG	4 cut(s)	74, 105, 234, 360
DpnI	GATC	3 cut(s)	297, 348, 653
DpnII	GATC	3 cut(s)	295, 346, 651
DraIII	CACNNNGTG	1 cut(s)	513
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	589
Eco81I	CCTNAGG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	98, 565
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	5 cut(s)	148, 401, 467, 562, 635
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	5 cut(s)	144, 397, 463, 558, 631
FauI	CCCGC	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	545, 578
Fnu4HI	GCNGC	2 cut(s)	368, 606
FokI	GGATG	2 cut(s)	92, 251
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	368, 606
FspBI	CTAG	2 cut(s)	36, 158
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	2 cut(s)	368, 606
GsuI	CTGGAG	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	5 cut(s)	148, 401, 467, 562, 635
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	2 cut(s)	448, 546
HindII	GTYRAC	2 cut(s)	448, 546
HinfI	GANTC	2 cut(s)	356, 547
HpaI	GTTAAC	1 cut(s)	448
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	7 cut(s)	18, 43, 53, 280, 448, 546, 579
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	3 cut(s)	233, 377, 551
Hpy8I	GTNNAC	7 cut(s)	18, 43, 53, 280, 448, 546, 579
HpyAV	CCTTC	2 cut(s)	401, 472
HpyCH4III	ACNGT	3 cut(s)	88, 284, 576
HpyCH4V	TGCA	4 cut(s)	119, 128, 167, 227
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 125, 154
HpyF3I	CTNAG	4 cut(s)	74, 105, 234, 360
Hsp92II	CATG	5 cut(s)	148, 401, 467, 562, 635
HspAI	GCGC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	295
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	295, 346, 651
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	354, 592
LweI	GCATC	4 cut(s)	70, 115, 154, 424
MaeI	CTAG	2 cut(s)	36, 158
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	3 cut(s)	297, 348, 653
MboI	GATC	3 cut(s)	295, 346, 651
MboII	GAAGA	2 cut(s)	184, 200
MhlI	GDGCHC	2 cut(s)	339, 591
MluCI	AATT	6 cut(s)	4, 228, 342, 457, 624, 657
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	6 cut(s)	147, 224, 229, 355, 479, 512
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	100, 567
MvaI	CCWGG	2 cut(s)	100, 567
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	110, 125, 154
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	3 cut(s)	295, 346, 651
NlaIII	CATG	5 cut(s)	148, 401, 467, 562, 635
NspI	RCATGY	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	635
PasI	CCCWGGG	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	369, 607
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	2 cut(s)	98, 565
PspGI	CCWGG	2 cut(s)	98, 565
RsaI	GTAC	3 cut(s)	17, 44, 196
RsaNI	GTAC	3 cut(s)	16, 43, 195
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	544
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	368, 606
Sau3AI	GATC	3 cut(s)	295, 346, 651
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	100, 567
SduI	GDGCHC	2 cut(s)	339, 591
SfaNI	GCATC	4 cut(s)	70, 115, 154, 424
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SpeI	ACTAGT	1 cut(s)	35
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	6 cut(s)	4, 228, 342, 457, 624, 657
SsiI	CCGC	2 cut(s)	47, 437
SspMI	CTAG	2 cut(s)	36, 158
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	98, 565
TaaI	ACNGT	3 cut(s)	88, 284, 576
TaqI	TCGA	2 cut(s)	432, 545
TasI	AATT	6 cut(s)	4, 228, 342, 457, 624, 657
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	91, 223
TseI	GCWGC	2 cut(s)	367, 605
TspDTI	ATGAA	5 cut(s)	17, 414, 420, 491, 575
TspRI	CASTG	2 cut(s)	91, 223
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	2 cut(s)	545, 578
XspI	CTAG	2 cut(s)	36, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.