Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

13886033 .. 13887272

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGATTATCTCTGAGATGGAGGAGGCGAGACCCTCGATGGTGCCTTTCACCGCAAGTTTTGATCCTTCAAACCCAATAGCGTTTTTGGAGAAAGTTCTTGATGTTATCGGGAAAGAGAGCAATTTTCTGAAGAAAGACACGGCTGAGAAGGAGATCGTGGCTGCTGTTATGGCTGCGAAGCAGAGGTTGAGGGAAGCGGAGAAGAAGAAGTTGGAGAAGGAGAGTGTTAAGTCCATGGAGGTTGAGAAGCCAAAGAAAGATAGCTTGAAGCCCACGGAGCTGGAGAAGCCGAAGGAGGAGAGCTTGATGGCGACTGATCCCATGGAGATTGAGAAGCCTAAAGAGGAGAAAGAATCGGGTCCCATCGTTCCTAACAAAGGCAATGGGCTTGATTTTGAGAAATACTCATGGGGACAGAATCTCCAAGAGGTCACAATTAACATTCCAATGCCGGAAGGCACTAAATCAAGGTCTGTTACCTGTGAAATCAAGAAGAACCGTCTCAAAGTTGGTCTCAAAGGGCAAGACCTAATCGTCGATGGAGAATTCTTCAATTCTGTCAAGCCTGACGACTGCTTCTGGAATATCGAGGATCAAAAGATGATATCGGTGCTCTTGACAAAGCAAGACCAGATGGAGTGGTGGAAGTATTGTGTGAAGGGAGAACCTGAGATAGACACTCAGAAAGTTGAACCAGAGACCAGCAAACTTGGTGATCTCGACCCTGAAACTCGCGCATCCGTTGAGAAGATGATGTTTGATCAAAGGCAGAAGCAGATGGGACTACCAAGGAGTGATGAGATAGAGAAGAAAGATATGCTCAAGAAGTTCATGGCTCAGAATCCTGGGATGGACTTCTCTAATGCAAAGTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

293

Amino Acids

33.52

Weight (kDa)

5.19

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	134 - 209	5.6e-22	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	43
AccII	CGCG	1 cut(s)	738
AciI	CCGC	2 cut(s)	54, 200
AclWI	GGATC	3 cut(s)	59, 314, 603
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	4 cut(s)	72, 271, 556, 695
AjnI	CCWGG	1 cut(s)	847
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	3 cut(s)	267, 283, 306
AluI	AGCT	3 cut(s)	267, 283, 306
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	4 cut(s)	25, 509, 521, 695
AlwI	GGATC	3 cut(s)	59, 314, 603
ApeKI	GCWGC	2 cut(s)	164, 176
ApoI	RAATTY	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	43, 728
AvaII	GGWCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	151, 163
BccI	CCATC	8 cut(s)	13, 34, 304, 374, 536, 631, 775, 847
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	849
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	4 cut(s)	25, 509, 521, 695
BisI	GCNGC	2 cut(s)	165, 177
BlsI	GCNGC	2 cut(s)	166, 178
Bme1390I	CCNGG	1 cut(s)	849
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	3 cut(s)	45, 363, 364
BmrFI	CCNGG	1 cut(s)	849
BmsI	GCATC	1 cut(s)	749
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	809
BsaI	GGTCTC	3 cut(s)	25, 521, 695
BsaJI	CCNNGG	5 cut(s)	237, 276, 324, 791, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	849
BseDI	CCNNGG	5 cut(s)	237, 276, 324, 791, 848
BseGI	GGATG	2 cut(s)	740, 858
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	5 cut(s)	6, 138, 663, 698, 854
BseRI	GAGGAG	3 cut(s)	38, 314, 362
BseXI	GCAGC	2 cut(s)	151, 163
Bsh1236I	CGCG	1 cut(s)	738
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	3 cut(s)	348, 429, 798
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	4 cut(s)	25, 509, 521, 695
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	3 cut(s)	348, 429, 798
Bso31I	GGTCTC	3 cut(s)	25, 521, 695
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
Bsp19I	CCATGG	2 cut(s)	237, 324
BspACI	CCGC	2 cut(s)	54, 200
BspCNI	CTCAG	5 cut(s)	7, 139, 664, 697, 853
BspFNI	CGCG	1 cut(s)	738
BspLI	GGNNCC	3 cut(s)	45, 363, 364
BspPI	GGATC	3 cut(s)	59, 314, 603
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	3 cut(s)	25, 521, 695
BsrDI	GCAATG	1 cut(s)	391
BssECI	CCNNGG	5 cut(s)	237, 276, 324, 791, 848
BssMI	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
BssT1I	CCWWGG	3 cut(s)	237, 324, 791
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	1 cut(s)	503
BstDEI	CTNAG	5 cut(s)	15, 147, 672, 684, 840
BstDSI	CCRYGG	3 cut(s)	237, 276, 324
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	740, 858
BstFNI	CGCG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	6 cut(s)	67, 159, 322, 598, 721, 766
BstMAI	GTCTC	4 cut(s)	25, 509, 521, 695
BstMBI	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 280, 289
BstNI	CCWGG	1 cut(s)	849
BstSCI	CCNGG	1 cut(s)	847
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	2 cut(s)	151, 163
BstXI	CCANNNNNNTGG	1 cut(s)	283
BtgI	CCRYGG	3 cut(s)	237, 276, 324
BtsCI	GGATG	2 cut(s)	740, 858
CfoI	GCGC	1 cut(s)	740
Cfr13I	GGNCC	1 cut(s)	362
CviAII	CATG	4 cut(s)	238, 325, 411, 835
DdeI	CTNAG	5 cut(s)	15, 147, 672, 684, 840
DpnI	GATC	6 cut(s)	66, 158, 321, 597, 720, 765
DpnII	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
Eco130I	CCWWGG	3 cut(s)	237, 324, 791
Eco31I	GGTCTC	3 cut(s)	25, 521, 695
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	847
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	3 cut(s)	237, 324, 791
ErhI	CCWWGG	3 cut(s)	237, 324, 791
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	4 cut(s)	241, 328, 414, 838
FaiI	YATR	6 cut(s)	173, 239, 326, 412, 821, 836
FaqI	GGGAC	3 cut(s)	348, 429, 798
FatI	CATG	4 cut(s)	237, 324, 410, 834
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	2 cut(s)	165, 177
FokI	GGATG	2 cut(s)	727, 865
Fsp4HI	GCNGC	2 cut(s)	165, 177
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	2 cut(s)	165, 177
GsuI	CTGGAG	1 cut(s)	305
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	4 cut(s)	241, 328, 414, 838
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HinfI	GANTC	3 cut(s)	356, 421, 844
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	43, 728
Hpy188I	TCNGA	4 cut(s)	16, 132, 687, 843
Hpy188III	TCNNGA	7 cut(s)	101, 112, 493, 583, 619, 722, 826
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	6 cut(s)	78, 145, 214, 289, 452, 655
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	1 cut(s)	869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 280, 289
HpyF3I	CTNAG	5 cut(s)	15, 147, 672, 684, 840
Hsp92II	CATG	4 cut(s)	241, 328, 414, 838
HspAI	GCGC	1 cut(s)	738
KflI	GGGWCCC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	151, 163
LweI	GCATC	1 cut(s)	749
MaeIII	GTNAC	2 cut(s)	433, 478
MalI	GATC	6 cut(s)	66, 158, 321, 597, 720, 765
MboI	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
MboII	GAAGA	7 cut(s)	145, 217, 220, 508, 544, 763, 823
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	4 cut(s)	124, 438, 548, 556
MmeI	TCCRAC	1 cut(s)	195
MseI	TTAA	3 cut(s)	231, 441, 876
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	849
MvaI	CCWGG	1 cut(s)	849
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	3 cut(s)	173, 280, 289
NcoI	CCATGG	2 cut(s)	237, 324
NdeII	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
NlaIII	CATG	4 cut(s)	241, 328, 414, 838
NlaIV	GGNNCC	3 cut(s)	45, 363, 364
NmuCI	GTSAC	1 cut(s)	433
PfeI	GAWTC	3 cut(s)	356, 421, 844
PkrI	GCNGC	2 cut(s)	166, 178
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	3 cut(s)	45, 363, 364
PspPI	GGNCC	1 cut(s)	362
PspPPI	RGGWCCY	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	231, 441, 876
SatI	GCNGC	2 cut(s)	165, 177
Sau3AI	GATC	6 cut(s)	64, 156, 319, 595, 718, 763
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	1 cut(s)	749
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	4 cut(s)	124, 438, 548, 556
SsiI	CCGC	2 cut(s)	54, 200
StyD4I	CCNGG	1 cut(s)	847
StyI	CCWWGG	3 cut(s)	237, 324, 791
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	4 cut(s)	38, 540, 591, 723
TasI	AATT	4 cut(s)	124, 438, 548, 556
TfiI	GAWTC	3 cut(s)	356, 421, 844
Tru1I	TTAA	3 cut(s)	231, 441, 876
Tru9I	TTAA	3 cut(s)	231, 441, 876
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	164, 176
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	823
TspGWI	ACGGA	2 cut(s)	293, 733
VpaK11BI	GGWCC	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.