Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

18123680 .. 18124286

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGATAATCTCTGACATCCAAGAAGACCAAAACGAAAACCAAGTAAAGGTTCCTTCTTCCCAGCCATCATTGGTAGAGAGTGGCTTGAAAGTTCCAAACAAAGGGAATGGTCTTGATTTGGAGAAATACTCATGGACGCAGAGCCTGCAGGAGGTTAACGTACTGATTCCAGTGCCTGCTGGAACTAAGAAAAGGGATGTTGTATACGAGGTGAAGACAAACCATTTCAAGGATCAGACCGCTGTTTCCATTCTTTTGACCAAGAAGAACCAACAGGACTGGTGGAAGTCTTTAGTGAAAGGTGATCCCGAAATAGACACTCAAAAGGTTGAACCTGAACCCAGCAAACTATCCGACCTGGATTCTGAAACACGTCAGACTGTGGATAAGATGATGTTTGATCAGAGACAGAAGCAGAGGGGACTTCCAACTAGTGATGAGCTGCAGAAGCAGGAGCTGTTGAAGAAGTTCATGGCTCAGCACCCAGACATGGACTTTTCAAATGCTATGATGATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

174

Amino Acids

19.93

Weight (kDa)

5.29

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	42 - 78	2.7e-06	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	243, 302
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	5 cut(s)	49, 104, 154, 232, 493
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	91, 232, 335, 466, 504
AhlI	ACTAGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	360
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	2 cut(s)	445, 460
AluI	AGCT	2 cut(s)	445, 460
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	2 cut(s)	243, 302
AlwNI	CAGNNNCTG	3 cut(s)	148, 179, 460
ApeKI	GCWGC	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	226, 317
BbsI	GAAGAC	2 cut(s)	33, 224
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	403
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	2 cut(s)	149, 446
BisI	GCNGC	1 cut(s)	446
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	447
Bme1390I	CCNGG	1 cut(s)	362
BmgBI	CACGTC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	33, 224
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
Bpu1102I	GCTNAGC	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 104, 154, 232, 493
Bse1I	ACTGG	2 cut(s)	173, 287
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	18, 205
BseLI	CCNNNNNNNGG	5 cut(s)	49, 104, 154, 232, 493
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	2 cut(s)	173, 287
BseXI	GCAGC	1 cut(s)	432
BseYI	CCCAGC	2 cut(s)	63, 344
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	5 cut(s)	49, 104, 154, 232, 493
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	235, 307, 403
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	2 cut(s)	153, 450
BspPI	GGATC	2 cut(s)	243, 302
BsrI	ACTGG	2 cut(s)	173, 287
BssMI	GATC	3 cut(s)	235, 307, 403
BssNAI	GTATAC	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	385
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	149, 180
BstDEI	CTNAG	2 cut(s)	189, 480
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	2 cut(s)	18, 205
BstKTI	GATC	3 cut(s)	238, 310, 406
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	3 cut(s)	235, 307, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 451
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstSFI	CTRYAG	2 cut(s)	149, 446
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	2 cut(s)	33, 224
BstZ17I	GTATAC	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	18, 205
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	149, 180
CaiI	CAGNNNCTG	3 cut(s)	148, 179, 460
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	3 cut(s)	135, 475, 493
CviJI	RGCY	6 cut(s)	67, 87, 147, 445, 460, 479
CviKI_1	RGCY	6 cut(s)	67, 87, 147, 445, 460, 479
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	189, 480
DpnI	GATC	3 cut(s)	237, 309, 405
DpnII	GATC	3 cut(s)	235, 307, 403
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	3 cut(s)	138, 478, 496
FaiI	YATR	5 cut(s)	136, 208, 476, 494, 512
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	3 cut(s)	134, 474, 492
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	2 cut(s)	5, 212
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	1 cut(s)	446
GsaI	CCCAGC	2 cut(s)	67, 348
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	138, 478, 496
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	169, 365
HpaI	GTTAAC	1 cut(s)	160
HphI	GGTGA	2 cut(s)	226, 317
Hpy166II	GTNNAC	2 cut(s)	160, 208
Hpy188I	TCNGA	6 cut(s)	16, 240, 358, 370, 381, 408
Hpy188III	TCNNGA	2 cut(s)	116, 311
Hpy8I	GTNNAC	2 cut(s)	160, 208
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	162, 376
HpyCH4V	TGCA	3 cut(s)	151, 448, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 451
HpyF3I	CTNAG	2 cut(s)	189, 480
HpySE526I	ACGT	2 cut(s)	162, 376
Hsp92II	CATG	3 cut(s)	138, 478, 496
Ksp22I	TGATCA	1 cut(s)	403
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	235, 307, 403
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	162, 376
MalI	GATC	3 cut(s)	237, 309, 405
MboI	GATC	3 cut(s)	235, 307, 403
MboII	GAAGA	5 cut(s)	38, 51, 229, 280, 478
MmeI	TCCRAC	2 cut(s)	381, 455
MnlI	CCTC	3 cut(s)	148, 205, 414
MroXI	GAANNNNTTC	1 cut(s)	470
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	148, 451
NdeII	GATC	3 cut(s)	235, 307, 403
NlaIII	CATG	3 cut(s)	138, 478, 496
NlaIV	GGNNCC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	169, 365
PkrI	GCNGC	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	2 cut(s)	63, 344
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	2 cut(s)	153, 450
PstNI	CAGNNNCTG	3 cut(s)	148, 179, 460
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	3 cut(s)	235, 307, 403
SbfI	CCTGCAGG	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	362
SdaI	CCTGCAGG	1 cut(s)	153
SfaNI	GCATC	1 cut(s)	507
SfcI	CTRYAG	2 cut(s)	149, 446
SpeI	ACTAGT	1 cut(s)	434
Sse8387I	CCTGCAGG	1 cut(s)	153
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	165, 379
TfiI	GAWTC	2 cut(s)	169, 365
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	470
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.