Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

70315167 .. 70315379

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0519100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGTTCGGTGTCCATCACTAAATCTTTCTTCTACTTGGTGGGGAGGGTTTTGACCCGAAAGGCTGTTGATGATAAGGGACTTCCTGGAATGCTTGCGGTAGTTTGGGGGCTGAAGGATAGAGTGTCAATCATCTCCCATGAAGATGGATGTTTTTTGTTCAATTTCAAATGGAGGGAAGATTGCAACCGTATTCTTCACGGTGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

70

Amino Acids

7.89

Weight (kDa)

9.18

Isoelectric Point (pI)

11.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	12 - 70	2e-08	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	163, 169
AjnI	CCWGG	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BccI	CCATC	2 cut(s)	23, 140
BciT130I	CCWGG	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	191, 203
BstC8I	GCNNGC	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	2 cut(s)	65, 112
CviKI_1	RGCY	2 cut(s)	65, 112
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	139
FokI	GGATG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	191, 203
HpyCH4V	TGCA	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	143
LpnPI	CCDG	2 cut(s)	72, 99
MboII	GAAGA	4 cut(s)	22, 155, 188, 191
MluCI	AATT	1 cut(s)	163
MnlI	CCTC	2 cut(s)	39, 168
MslI	CAYNNNNRTG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	87
NlaIII	CATG	1 cut(s)	143
PctI	GAATGC	1 cut(s)	96
PfoI	TCCNGGA	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	1 cut(s)	211
SgeI	CNNG	6 cut(s)	49, 69, 98, 99, 107, 152
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	1 cut(s)	163
SsiI	CCGC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	191, 203
TasI	AATT	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.