Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Reverse (-)

15884307 .. 15885097

Gene Structure 791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG171300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGATAATCTCTGACATCCAAGAAGACCAAAACGAAAACCAAGTAAAGGTTCCTTCTTCCCAGCCATCATTGGTAGAGGTTAAGGCAGAAGAGAAGAGGGTGAAGGAGGAAGACAAAGGGAAGAAGAGTGGCTTGAAAGTTCCAAACAAAGGGAATGGTCTTGATTTTGAGAAATACTCATGGACGCAGAGCCTGCAGGAGGTTAACGTACTGATTCCAGTGCCTGCTGGAACTAAGAAAAGGGATGTTGTATACGAGGTGAAGACAAACCATCTCAAGTTTGGACTCAAAGGGCAGCCTCCTATAATTGATGGTTACCTCTTTCAGTCAATCAAGCCTGATGATTGTTTGTGGAGCATAGAGGATCAGACTGCTGTCTCCATTCTTTTGACCAAGAAGAACCAACAGGACTGGTGGAAGTCTTTAGTGAAAGGTGATCCCGAAATAGACACTCAAAAGGTTGAACCTGAACCCAGCAAACTATCCGACCTGGATTCTGAAACACGTCAGACTGTGGAGAAGATGATGTTTGATCAGAGACAGAAGCAGAGGGGACTTCCAACTAGTGATGAGCTGCAGAAGCAGGAGCTGTTGAAGAAGTTCATGGCTCAGCACCCGGACATGGACTTTTCAAATGCTATGATGATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

218

Amino Acids

24.99

Weight (kDa)

5.43

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	58 - 133	7.1e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	375, 434
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	49, 152, 202, 625
AflIII	ACRYGT	1 cut(s)	506
AgsI	TTSAA	4 cut(s)	139, 467, 598, 636
AhlI	ACTAGT	1 cut(s)	566
AjiI	CACGTC	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	2 cut(s)	577, 592
AluI	AGCT	2 cut(s)	577, 592
Alw26I	GTCTC	2 cut(s)	385, 535
AlwI	GGATC	2 cut(s)	375, 434
AlwNI	CAGNNNCTG	3 cut(s)	196, 227, 592
ApeKI	GCWGC	2 cut(s)	298, 577
Asp700I	GAANNNNTTC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	3 cut(s)	115, 274, 449
BbsI	GAAGAC	3 cut(s)	33, 120, 272
BbvI	GCAGC	2 cut(s)	310, 564
BccI	CCATC	3 cut(s)	76, 282, 308
BciT130I	CCWGG	1 cut(s)	494
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	2 cut(s)	385, 535
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	1 cut(s)	567
BfmI	CTRYAG	2 cut(s)	197, 578
BisI	GCNGC	2 cut(s)	299, 578
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	2 cut(s)	300, 579
Bme1390I	CCNGG	2 cut(s)	494, 620
BmgBI	CACGTC	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	494, 620
BmsI	GCATC	1 cut(s)	639
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	3 cut(s)	33, 120, 272
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu1102I	GCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 152, 202, 625
Bse1I	ACTGG	2 cut(s)	221, 419
BseBI	CCWGG	1 cut(s)	494
BseGI	GGATG	2 cut(s)	18, 253
BseLI	CCNNNNNNNGG	4 cut(s)	49, 152, 202, 625
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	2 cut(s)	221, 419
BseXI	GCAGC	2 cut(s)	310, 564
BseYI	CCCAGC	2 cut(s)	63, 476
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	570
BslI	CCNNNNNNNGG	4 cut(s)	49, 152, 202, 625
BsmAI	GTCTC	2 cut(s)	385, 535
BsmFI	GGGAC	1 cut(s)	570
Bsp143I	GATC	3 cut(s)	367, 439, 535
Bsp1720I	GCTNAGC	1 cut(s)	612
BspCNI	CTCAG	1 cut(s)	625
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	2 cut(s)	201, 582
BspPI	GGATC	2 cut(s)	375, 434
BsrI	ACTGG	2 cut(s)	221, 419
BssMI	GATC	3 cut(s)	367, 439, 535
BssNAI	GTATAC	1 cut(s)	256
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	3 cut(s)	87, 92, 122
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	197, 228
BstDEI	CTNAG	2 cut(s)	237, 612
BstEII	GGTNACC	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	18, 253
BstKTI	GATC	3 cut(s)	370, 442, 538
BstMAI	GTCTC	2 cut(s)	385, 535
BstMBI	GATC	3 cut(s)	367, 439, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 583
BstNI	CCWGG	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	492, 618
BstSFI	CTRYAG	2 cut(s)	197, 578
BstV1I	GCAGC	2 cut(s)	310, 564
BstV2I	GAAGAC	3 cut(s)	33, 120, 272
BstZ17I	GTATAC	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	18, 253
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	197, 228
CaiI	CAGNNNCTG	3 cut(s)	196, 227, 592
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	183, 607, 625
CviJI	RGCY	8 cut(s)	67, 135, 195, 301, 340, 577, 592, 611
CviKI_1	RGCY	8 cut(s)	67, 135, 195, 301, 340, 577, 592, 611
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	237, 612
DpnI	GATC	3 cut(s)	369, 441, 537
DpnII	GATC	3 cut(s)	367, 439, 535
Eam1104I	CTCTTC	3 cut(s)	87, 92, 122
EarI	CTCTTC	3 cut(s)	87, 92, 122
Eco91I	GGTNACC	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	492
FaeI	CATG	3 cut(s)	186, 610, 628
FaiI	YATR	7 cut(s)	184, 256, 308, 362, 608, 626, 644
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	570
FatI	CATG	3 cut(s)	182, 606, 624
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	299, 578
FokI	GGATG	2 cut(s)	5, 260
Fsp4HI	GCNGC	2 cut(s)	299, 578
FspBI	CTAG	1 cut(s)	567
GluI	GCNGC	2 cut(s)	299, 578
GsaI	CCCAGC	2 cut(s)	67, 480
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	196
Hin1II	CATG	3 cut(s)	186, 610, 628
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	217, 288, 497
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	3 cut(s)	115, 274, 449
Hpy166II	GTNNAC	2 cut(s)	208, 256
Hpy188I	TCNGA	6 cut(s)	16, 372, 490, 502, 513, 540
Hpy188III	TCNNGA	2 cut(s)	164, 443
Hpy8I	GTNNAC	2 cut(s)	208, 256
HpyAV	CCTTC	2 cut(s)	66, 100
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	2 cut(s)	210, 508
HpyCH4V	TGCA	3 cut(s)	199, 580, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 583
HpyF3I	CTNAG	2 cut(s)	237, 612
HpySE526I	ACGT	2 cut(s)	210, 508
Hsp92II	CATG	3 cut(s)	186, 610, 628
Ksp22I	TGATCA	1 cut(s)	535
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	367, 439, 535
LmnI	GCTCC	2 cut(s)	357, 589
Lsp1109I	GCAGC	2 cut(s)	310, 564
LweI	GCATC	1 cut(s)	639
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	2 cut(s)	210, 508
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	3 cut(s)	369, 441, 537
MboI	GATC	3 cut(s)	367, 439, 535
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	2 cut(s)	513, 587
MnlI	CCTC	9 cut(s)	73, 93, 103, 196, 253, 312, 332, 358, 546
MroXI	GAANNNNTTC	1 cut(s)	602
MseI	TTAA	2 cut(s)	84, 207
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	494, 620
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	196, 583
NciI	CCSGG	1 cut(s)	620
NdeII	GATC	3 cut(s)	367, 439, 535
NlaIII	CATG	3 cut(s)	186, 610, 628
NlaIV	GGNNCC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	2 cut(s)	217, 497
PkrI	GCNGC	2 cut(s)	300, 579
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
PshAI	GACNNNNGTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	492
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	2 cut(s)	63, 476
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	2 cut(s)	201, 582
PstNI	CAGNNNCTG	3 cut(s)	196, 227, 592
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	84, 207
SatI	GCNGC	2 cut(s)	299, 578
Sau3AI	GATC	3 cut(s)	367, 439, 535
SbfI	CCTGCAGG	1 cut(s)	201
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	494, 620
SdaI	CCTGCAGG	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	639
SfcI	CTRYAG	2 cut(s)	197, 578
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	566
Sse8387I	CCTGCAGG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	492, 618
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	2 cut(s)	213, 511
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	217, 497
Tru1I	TTAA	2 cut(s)	84, 207
Tru9I	TTAA	2 cut(s)	84, 207
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	2 cut(s)	298, 577
TspDTI	ATGAA	1 cut(s)	595
TspRI	CASTG	1 cut(s)	228
XagI	CCTNNNNNAGG	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.