Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Reverse (-)

14962905 .. 14963793

Gene Structure 889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGATAATCTCAGAATTCGAAGAAGAACAAACTGAAACCCAAACCAAAGTCGCACCACCCTCTGAGTCATCATCGTCGCTTAAGGCAGAGAAGAAAGAGGTCAAGTTGGAGGATGACAAAGGGAAAGCTGGAGGGTCCAAACTAGTTCCAAACAAAGGGAATGGCTTTGATCTAGAGAAGTACTCATGGACACAGAGCCTGCAAGAGGTTAACATAATGATCCCAGTGCCTGCCGGAACTAAATCAAGGGATGTTTTGTACGAGGCAAAGGCGAAGCATCTCAAGTTTGGACTCAAGGGTCAACCAGCTCCTATTATCGATGGTGATCTGTTTCAGTCTATCAAGCCTGATGAGTGCTTGTGGAGCATAGAGGATCAGAGTGCTGTCTCTATTCTGTTGACAAAGCAAAACCAAACGGACTGGTGGAAGTCTTTGGTGAAAGGTGATCCAGAGATTGACACTCAAAAGGTTGAACCTGAGCCTAGTACACTGACCGACCTGGATTCCGAGACGCGCCGCACTGTAGAGAAGATGATGTTTGATCAAAGGCAGAAGCAGATGGGGCGTCCGACTAGTGATGAGATGCAGCAGCAGGAGTTGATGAAGAAGTTCATGGAACAGCATCCGAACATGGACTTTTCAAAGGTTAAGATGATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

222

Amino Acids

25.13

Weight (kDa)

5.11

Isoelectric Point (pI)

58.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	60 - 136	7.1e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	300
AccII	CGCG	1 cut(s)	517
AciI	CCGC	1 cut(s)	520
AclWI	GGATC	3 cut(s)	217, 384, 443
AcsI	RAATTY	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	568
AfaI	GTAC	3 cut(s)	185, 263, 490
AfiI	CCNNNNNNNGG	2 cut(s)	158, 208
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	476, 645
AhlI	ACTAGT	2 cut(s)	145, 575
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	131, 311
AluI	AGCT	2 cut(s)	131, 311
Alw26I	GTCTC	2 cut(s)	394, 506
AlwI	GGATC	3 cut(s)	217, 384, 443
AlwNI	CAGNNNCTG	2 cut(s)	202, 233
ApeKI	GCWGC	2 cut(s)	589, 592
ApoI	RAATTY	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	3 cut(s)	338, 451, 458
AsuII	TTCGAA	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	601, 604
BccI	CCATC	2 cut(s)	317, 556
BciT130I	CCWGG	1 cut(s)	503
BclI	TGATCA	1 cut(s)	544
BcoDI	GTCTC	2 cut(s)	394, 506
BcuI	ACTAGT	2 cut(s)	145, 575
BfaI	CTAG	4 cut(s)	146, 176, 486, 576
BfmI	CTRYAG	1 cut(s)	525
BfrI	CTTAAG	1 cut(s)	83
BisI	GCNGC	3 cut(s)	520, 590, 593
BlsI	GCNGC	3 cut(s)	521, 591, 594
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	3 cut(s)	289, 576, 634
BmuI	ACTGGG	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	269, 281
Bsa29I	ATCGAT	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 208
Bse1I	ACTGG	2 cut(s)	227, 428
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	503
BseCI	ATCGAT	1 cut(s)	321
BseGI	GGATG	3 cut(s)	121, 259, 625
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	158, 208
BseMII	CTCAG	3 cut(s)	27, 57, 471
BseNI	ACTGG	2 cut(s)	227, 428
BseXI	GCAGC	2 cut(s)	601, 604
Bsh1236I	CGCG	1 cut(s)	517
BshVI	ATCGAT	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	158, 208
BsmAI	GTCTC	2 cut(s)	394, 506
BsmBI	CGTCTC	1 cut(s)	506
Bsp119I	TTCGAA	1 cut(s)	21
Bsp143I	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
BspACI	CCGC	1 cut(s)	520
BspCNI	CTCAG	3 cut(s)	26, 58, 472
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	3 cut(s)	217, 384, 443
BspT104I	TTCGAA	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	227, 428
BssMI	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
BssNI	GRCGYC	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	526
BstACI	GRCGYC	1 cut(s)	568
BstAFI	CTTAAG	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	203, 234
BstDEI	CTNAG	3 cut(s)	13, 66, 480
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	121, 259, 625
BstFNI	CGCG	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	6 cut(s)	175, 225, 331, 379, 451, 547
BstMAI	GTCTC	2 cut(s)	394, 506
BstMBI	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	366, 565
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	601, 604
Bsu15I	ATCGAT	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	121, 259, 625
BtsIMutI	CAGTG	3 cut(s)	234, 491, 522
Cac8I	GCNNGC	2 cut(s)	203, 234
CaiI	CAGNNNCTG	2 cut(s)	202, 233
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	2 cut(s)	523, 557
Csp6I	GTAC	3 cut(s)	184, 262, 489
CviAII	CATG	3 cut(s)	189, 616, 634
CviJI	RGCY	6 cut(s)	131, 168, 201, 311, 349, 484
CviKI_1	RGCY	6 cut(s)	131, 168, 201, 311, 349, 484
CviQI	GTAC	3 cut(s)	184, 262, 489
DdeI	CTNAG	3 cut(s)	13, 66, 480
DpnI	GATC	6 cut(s)	174, 224, 330, 378, 450, 546
DpnII	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
DrdI	GACNNNNNNGTC	1 cut(s)	300
DseDI	GACNNNNNNGTC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	3 cut(s)	192, 619, 637
FaiI	YATR	5 cut(s)	190, 218, 371, 617, 635
FatI	CATG	3 cut(s)	188, 615, 633
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	520, 590, 593
FokI	GGATG	3 cut(s)	128, 266, 612
Fsp4HI	GCNGC	3 cut(s)	520, 590, 593
FspBI	CTAG	4 cut(s)	146, 176, 486, 576
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	520, 590, 593
GsuI	CTGGAG	1 cut(s)	153
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	2 cut(s)	523, 557
HhaI	GCGC	1 cut(s)	519
Hin1I	GRCGYC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	192, 619, 637
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	3 cut(s)	214, 305, 402
HindII	GTYRAC	3 cut(s)	214, 305, 402
HinfI	GANTC	3 cut(s)	68, 294, 506
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	3 cut(s)	338, 451, 458
Hpy166II	GTNNAC	4 cut(s)	214, 305, 402, 491
Hpy188I	TCNGA	6 cut(s)	16, 67, 381, 511, 573, 630
Hpy188III	TCNNGA	2 cut(s)	176, 452
Hpy8I	GTNNAC	4 cut(s)	214, 305, 402, 491
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4V	TGCA	2 cut(s)	205, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	366, 565
HpyF3I	CTNAG	3 cut(s)	13, 66, 480
Hsp92I	GRCGYC	1 cut(s)	568
Hsp92II	CATG	3 cut(s)	192, 619, 637
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
LmnI	GCTCC	2 cut(s)	316, 366
Lsp1109I	GCAGC	2 cut(s)	601, 604
LweI	GCATC	3 cut(s)	289, 576, 634
MaeI	CTAG	4 cut(s)	146, 176, 486, 576
MalI	GATC	6 cut(s)	174, 224, 330, 378, 450, 546
MboI	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
MboII	GAAGA	5 cut(s)	35, 38, 106, 544, 619
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	77, 288
MmeI	TCCRAC	2 cut(s)	90, 596
MnlI	CCTC	7 cut(s)	73, 94, 106, 128, 202, 259, 367
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	3 cut(s)	84, 213, 651
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	2 cut(s)	366, 565
NdeII	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
NlaIII	CATG	3 cut(s)	192, 619, 637
NlaIV	GGNNCC	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	521, 591, 594
PleI	GAGTC	2 cut(s)	76, 288
PpsI	GAGTC	2 cut(s)	76, 288
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	138
PstNI	CAGNNNCTG	2 cut(s)	202, 233
RsaI	GTAC	3 cut(s)	185, 263, 490
RsaNI	GTAC	3 cut(s)	184, 262, 489
SaqAI	TTAA	3 cut(s)	84, 213, 651
SatI	GCNGC	3 cut(s)	520, 590, 593
Sau3AI	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
Sau96I	GGNCC	1 cut(s)	138
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	2 cut(s)	77, 288
ScrFI	CCNGG	1 cut(s)	503
SetI	ASST	9 cut(s)	105, 133, 213, 313, 448, 474, 481, 504, 651
SfaNI	GCATC	3 cut(s)	289, 576, 634
SfcI	CTRYAG	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	21
SinI	GGWCC	1 cut(s)	138
SmlI	CTYRAG	3 cut(s)	83, 284, 296
SmoI	CTYRAG	3 cut(s)	83, 284, 296
SpeI	ACTAGT	2 cut(s)	145, 575
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	520
SspMI	CTAG	4 cut(s)	146, 176, 486, 576
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	526
TaqI	TCGA	2 cut(s)	21, 321
TaqII	GACCGA	1 cut(s)	512
TasI	AATT	1 cut(s)	17
TatI	WGTACW	2 cut(s)	183, 488
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	3 cut(s)	84, 213, 651
Tru9I	TTAA	3 cut(s)	84, 213, 651
TscAI	CASTG	3 cut(s)	234, 498, 529
TseI	GCWGC	2 cut(s)	589, 592
TspDTI	ATGAA	2 cut(s)	604, 620
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	3 cut(s)	234, 498, 529
Vha464I	CTTAAG	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	4 cut(s)	146, 176, 486, 576
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.