Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Reverse (-)

31261925 .. 31264409

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1220500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGATAATCTCCGACATCCAGGAAGAGCAGAGGGCGCCCGAGAGGAAGCCTTCGAAGGCGTCGCCGTCGTCGAAAGAGTATACATTTACAGCGAAGATTGATCGCAGGAACCCACTTGATTTAGTGGAGAAGACGTTGGAATTTATTGCTCGGGAGAGCGATTTCTTCAAGAGGGAGTCGTCGGAGAGGGAGGTCTTTGCGCTGGCGCGCCGCTTCAGGGAGAAGGAGAGGAAGATGCAGGAGGAGGAGAGGAAGAAGAGGAGGCAGGAGGAGGAAGAGAGGAGGAAGAAGGAGGAGGCGGAGAAGAAGGCGGAGGCGGAGCTGAGGGGGGAGGTGATAAAGGATGAAACTGAGGAGGAAAATGGCTTAAAAAATCCAAACAAAGGGAATGGACTGGATTTGGAGAAGTACTCGTGGACGCAGAGCCTTCAGGAGATTAATGTCGTTGTCCATGTGCCGCCTGGAACTAAATCTAGCTTTGTTGTGTGCGAGATCAAGAAGAATCATCTGAAGGTTGGACTGAAGGGGCAGCCTCCGATCATTGATGGCGAACTTTTGCAGTCTATCAAGCCCGATGATTGTTACTGGAGCATAGAGGATCAGAGGGCTGTCTCAATTCTTCTGACCAAGCACAACCAAATGGAGTGGTGGAAGTGTCTGGTGAAAGGTGATCCTGAGATCGACACTCACAAGGTTGAGCCTGAGCCCAGCAAATTGTCTGAACTGGATTCTGAAATGCGCCGGACTGTTGAAAAGATGATGTTTGATCAGAGACAGAAGCAGTTGGGGCTCCCCACCAGCGAGGAGATTGAAAAAGAAGAAATGTTAAAGAAGTTCATGTCTGAGCATCCGGAGATGGATTTCTCAAGGGCCAAGAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

296

Amino Acids

34.79

Weight (kDa)

5.97

Isoelectric Point (pI)

68.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	136 - 211	2.5e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	83
AccII	CGCG	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	853
AciI	CCGC	5 cut(s)	214, 302, 314, 320, 461
AclWI	GGATC	2 cut(s)	609, 668
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	4 cut(s)	202, 416, 533, 545
AcyI	GRCGYC	2 cut(s)	38, 62
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	2 cut(s)	220, 386
AgsI	TTSAA	3 cut(s)	172, 755, 815
AjnI	CCWGG	2 cut(s)	21, 463
AluBI	AGCT	2 cut(s)	325, 480
AluI	AGCT	2 cut(s)	325, 480
Alw26I	GTCTC	2 cut(s)	619, 769
AlwI	GGATC	2 cut(s)	609, 668
Ama87I	CYCGRG	2 cut(s)	41, 153
Aor13HI	TCCGGA	1 cut(s)	853
AoxI	GGCC	1 cut(s)	873
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	1 cut(s)	143
AscI	GGCGCGCC	1 cut(s)	209
AseI	ATTAAT	1 cut(s)	441
AspLEI	GCGC	5 cut(s)	40, 205, 211, 213, 744
AspS9I	GGNCC	1 cut(s)	873
AsuHPI	GGTGA	3 cut(s)	349, 676, 683
AsuII	TTCGAA	1 cut(s)	56
AvaI	CYCGRG	2 cut(s)	41, 153
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	711, 795
BauI	CACGAG	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	2 cut(s)	542, 853
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	23, 465
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	619, 769
BfaI	CTAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	3 cut(s)	214, 461, 533
BlsI	GCNGC	3 cut(s)	215, 462, 534
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	23, 465
BmeT110I	CYCGRG	2 cut(s)	41, 153
BmgT120I	GGNCC	1 cut(s)	873
BmiI	GGNNCC	3 cut(s)	39, 113, 794
BmrFI	CCNGG	2 cut(s)	23, 465
BmsI	GCATC	2 cut(s)	228, 859
BpiI	GAAGAC	1 cut(s)	140
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	1 cut(s)	610
Bpu10I	CCTNAGC	2 cut(s)	326, 705
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	853
BsaHI	GRCGYC	2 cut(s)	38, 62
BsaWI	WCCGGW	1 cut(s)	853
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 386
Bse1I	ACTGG	3 cut(s)	402, 593, 732
BseAI	TCCGGA	1 cut(s)	853
BseBI	CCWGG	2 cut(s)	23, 465
BseGI	GGATG	3 cut(s)	18, 352, 850
BseLI	CCNNNNNNNGG	2 cut(s)	220, 386
BseMII	CTCAG	5 cut(s)	317, 345, 669, 696, 837
BseNI	ACTGG	3 cut(s)	402, 593, 732
BsePI	GCGCGC	1 cut(s)	209
BseRI	GAGGAG	8 cut(s)	260, 263, 277, 287, 298, 311, 371, 821
BseXI	GCAGC	1 cut(s)	544
BseYI	CCCAGC	1 cut(s)	710
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	875
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	2 cut(s)	41, 153
BsiSI	CCGG	2 cut(s)	745, 854
BslI	CCNNNNNNNGG	2 cut(s)	220, 386
BsmAI	GTCTC	2 cut(s)	619, 769
BsnI	GGCC	1 cut(s)	875
BsoBI	CYCGRG	2 cut(s)	41, 153
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	711, 795
Bsp13I	TCCGGA	1 cut(s)	853
Bsp143I	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
BspACI	CCGC	5 cut(s)	214, 302, 314, 320, 461
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	5 cut(s)	318, 346, 670, 697, 838
BspEI	TCCGGA	1 cut(s)	853
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	39, 113, 794
BspPI	GGATC	2 cut(s)	609, 668
BspQI	GCTCTTC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	402, 593, 732
BssHII	GCGCGC	1 cut(s)	209
BssMI	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
BssNAI	GTATAC	1 cut(s)	84
BssNI	GRCGYC	2 cut(s)	38, 62
BssSI	CACGAG	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	23, 465
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	3 cut(s)	21, 254, 273
BstACI	GRCGYC	2 cut(s)	38, 62
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	207, 211
BstDEI	CTNAG	5 cut(s)	326, 354, 678, 705, 846
BstF5I	GGATG	3 cut(s)	18, 352, 850
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	5 cut(s)	40, 205, 211, 213, 744
BstKTI	GATC	7 cut(s)	106, 498, 543, 604, 676, 684, 772
BstMAI	GTCTC	2 cut(s)	619, 769
BstMBI	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 790
BstNI	CCWGG	2 cut(s)	23, 465
BstSCI	CCNGG	2 cut(s)	21, 463
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	1 cut(s)	140
BstZ17I	GTATAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	875
BtsCI	GGATG	3 cut(s)	18, 352, 850
Cac8I	GCNNGC	2 cut(s)	207, 211
CfoI	GCGC	5 cut(s)	40, 205, 211, 213, 744
Cfr13I	GGNCC	1 cut(s)	873
CseI	GACGC	2 cut(s)	51, 430
Csp6I	GTAC	1 cut(s)	412
CspCI	CAANNNNNGTGG	2 cut(s)	629, 664
CviAII	CATG	2 cut(s)	455, 841
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	5 cut(s)	326, 354, 678, 705, 846
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	7 cut(s)	105, 497, 542, 603, 675, 683, 771
DpnII	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
Eam1104I	CTCTTC	3 cut(s)	21, 254, 273
EarI	CTCTTC	3 cut(s)	21, 254, 273
EciI	GGCGGA	3 cut(s)	317, 329, 335
Eco24I	GRGCYC	2 cut(s)	711, 795
Eco57I	CTGAAG	4 cut(s)	202, 416, 533, 545
Eco88I	CYCGRG	2 cut(s)	41, 153
EcoRII	CCWGG	2 cut(s)	21, 463
EcoT38I	GRGCYC	2 cut(s)	711, 795
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
FaeI	CATG	2 cut(s)	458, 844
FaiI	YATR	4 cut(s)	84, 456, 596, 842
FatI	CATG	2 cut(s)	454, 840
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	214, 461, 533
FokI	GGATG	3 cut(s)	5, 359, 837
FriOI	GRGCYC	2 cut(s)	711, 795
Fsp4HI	GCNGC	3 cut(s)	214, 461, 533
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	5 cut(s)	39, 204, 210, 212, 743
GluI	GCNGC	3 cut(s)	214, 461, 533
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	1 cut(s)	610
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	875
HapII	CCGG	2 cut(s)	745, 854
HgaI	GACGC	2 cut(s)	51, 430
HhaI	GCGC	5 cut(s)	40, 205, 211, 213, 744
Hin1I	GRCGYC	2 cut(s)	38, 62
Hin1II	CATG	2 cut(s)	458, 844
Hin6I	GCGC	5 cut(s)	38, 203, 209, 211, 742
HinP1I	GCGC	5 cut(s)	38, 203, 209, 211, 742
HinfI	GANTC	3 cut(s)	179, 505, 731
HpaII	CCGG	2 cut(s)	745, 854
HphI	GGTGA	3 cut(s)	349, 676, 683
Hpy166II	GTNNAC	2 cut(s)	84, 420
Hpy188III	TCNNGA	6 cut(s)	155, 172, 434, 499, 677, 854
Hpy8I	GTNNAC	2 cut(s)	84, 420
Hpy99I	CGWCG	4 cut(s)	67, 73, 76, 187
HpyAV	CCTTC	8 cut(s)	52, 63, 220, 286, 304, 440, 508, 520
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	241, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 790
HpyF3I	CTNAG	5 cut(s)	326, 354, 678, 705, 846
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	2 cut(s)	38, 62
Hsp92II	CATG	2 cut(s)	458, 844
HspAI	GCGC	5 cut(s)	38, 203, 209, 211, 742
KasI	GGCGCC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	853
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	3 cut(s)	322, 591, 798
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	2 cut(s)	228, 859
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	7 cut(s)	105, 497, 542, 603, 675, 683, 771
MboI	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
MhlI	GDGCHC	2 cut(s)	711, 795
MluCI	AATT	3 cut(s)	143, 618, 716
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	4 cut(s)	39, 120, 165, 499
MroI	TCCGGA	1 cut(s)	853
MseI	TTAA	3 cut(s)	371, 441, 830
MspI	CCGG	2 cut(s)	745, 854
MspR9I	CCNGG	2 cut(s)	23, 465
MvaI	CCWGG	2 cut(s)	23, 465
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	37, 790
NarI	GGCGCC	1 cut(s)	38
NdeII	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
NlaIII	CATG	2 cut(s)	458, 844
NlaIV	GGNNCC	3 cut(s)	39, 113, 794
NspV	TTCGAA	1 cut(s)	56
PalAI	GGCGCGCC	1 cut(s)	209
PauI	GCGCGC	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	505, 731
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	3 cut(s)	215, 462, 534
PleI	GAGTC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	21, 463
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	2 cut(s)	21, 463
PspN4I	GGNNCC	3 cut(s)	39, 113, 794
PspPI	GGNCC	1 cut(s)	873
PteI	GCGCGC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	371, 441, 830
SatI	GCNGC	3 cut(s)	214, 461, 533
Sau3AI	GATC	7 cut(s)	103, 495, 540, 601, 673, 681, 769
Sau96I	GGNCC	1 cut(s)	873
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	23, 465
SduI	GDGCHC	2 cut(s)	711, 795
SetI	ASST	8 cut(s)	140, 198, 327, 339, 482, 519, 673, 699
SfaNI	GCATC	2 cut(s)	228, 859
SfoI	GGCGCC	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	56
SgsI	GGCGCGCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
Sse9I	AATT	3 cut(s)	143, 618, 716
SsiI	CCGC	5 cut(s)	214, 302, 314, 320, 461
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	21, 463
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	56, 74, 684
TasI	AATT	3 cut(s)	143, 618, 716
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	2 cut(s)	216, 463
TfiI	GAWTC	2 cut(s)	505, 731
Tru1I	TTAA	3 cut(s)	371, 441, 830
Tru9I	TTAA	3 cut(s)	371, 441, 830
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	363, 829
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.