Rroxscaffold_4G00279000

BOBBER 1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
1926882 .. 1929880
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279000.1

Sequence Viewer

Length: 1125 bp
ATGGCGATAATCTCCGATATCCAAGAGGAGCAGCAACAGAGCTCACCGCAAGCCAAATCGGCGTCGGCGTCGGCGTCGTCGTCGTCGGGGGCGAGAGTGGGAGCGACCTCGTTTAGCACGAAGTTCGATCGGAACAACACGTCGGGGTTTCTGGAGAAGGCGTTGGAGTTTCTGGCGCAGGAGAGCGACTTCATGAGGCGGCCGACGGCGGAGAGGGATCTGGTGGCGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGATGGAGGAGGAGAGGAAGAAGAGGTGGGCGGCGGAGGAGGAGAAGAAGAAGAAGGAGGCGGAGGTCAAGGCCAAGGAGGAGCCCAAGGCGGAGCCCAAGGTGGTGGAGGAGAAGAAGGAGAAGGTGGTGGAGGAGAAGAGTGGCAAGAGAGTTCCTAACAAAGGGAATGGGCTTGATATGGAGAAGTACTCATGGACCCAGAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTTAAGTTTGGACTGAAGGGTCAGCCTCTTATAATTGATGGGGAGCTCTATCAGTCTATCAAGCCTGATGATTGCTTATGGAGCATAGAGGATCAAACTGCTGTCTCTATTCTCCTGACCAAACACAACCAACTGGAGTGGTGGAAAGCTCTGCTGAAAGGTGACCCTGAAATAGACACTCAGAAAGTTGAACCGGAGCCAAGCAAATTGTCTGACCTGGATTCAGAAACACGTCAGACCGTCGAAAAAATGATGTTTGATCAGCGGCAAAAGCAGATGGGCCTTCCAACCAGTGAGGAGATGCAGAAGCAGGAGATCTTGAAGAAGTTTATGTCTGAGGTGATTTATTCATCCGGAAATGGACTTCTCAAGGGCCAAGATACAGTAAATGGGGTTGATGCGGTTTTGCTGACTATGGTGTCGTTTTGCACCCTGACTATGAACTGGCCAGAGTTGAGTTCTGATATATCAGAGGGCATTACCATTTACAACTCCCTGTCCATTTATCCCACGGATGGCAATTCTTATGACATGGTAGTGCATGCACCATGCTTATGTGACGTAGTAGTGCATTGA

Protein Analysis

374

Amino Acids

42.22

Weight (kDa)

5.43

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 149 - 224 3.1e-20 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AasI GACNNNNNNGTC 2 cut(s) 567, 967
AccIII TCCGGA 1 cut(s) 902
AclWI GGATC 2 cut(s) 225, 648
AcoI YGGCCR 2 cut(s) 200, 995
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 3 cut(s) 62, 68, 74
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 2 cut(s) 425, 1064
AflII CTTAAG 1 cut(s) 551
AflIII ACRYGT 2 cut(s) 138, 779
AgsI TTSAA 3 cut(s) 235, 740, 871
AhdI GACNNNNNGTC 1 cut(s) 465
AjiI CACGTC 2 cut(s) 141, 782
AjnI CCWGG 1 cut(s) 765
AluBI AGCT 3 cut(s) 42, 595, 698
AluI AGCT 3 cut(s) 42, 595, 698
Alw21I GWGCWC 2 cut(s) 44, 597
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 2 cut(s) 225, 648
AlwNI CAGNNNCTG 2 cut(s) 469, 500
Aor13HI TCCGGA 1 cut(s) 902
AoxI GGCC 5 cut(s) 200, 333, 829, 922, 995
ApeKI GCWGC 1 cut(s) 31
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 3 cut(s) 459, 829, 922
AsuHPI GGTGA 4 cut(s) 36, 253, 722, 901
AvaII GGWCC 1 cut(s) 459
BalI TGGCCA 1 cut(s) 997
BanII GRGCYC 4 cut(s) 44, 348, 360, 597
Bbv12I GWGCWC 2 cut(s) 44, 597
BbvI GCAGC 1 cut(s) 43
BccI CCATC 4 cut(s) 259, 581, 820, 1058
BceAI ACGGC 1 cut(s) 222
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 767
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 1 cut(s) 658
BfmI CTRYAG 1 cut(s) 470
BfrI CTTAAG 1 cut(s) 551
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 1 cut(s) 864
BisI GCNGC 4 cut(s) 32, 200, 294, 815
BlsI GCNGC 4 cut(s) 33, 201, 295, 816
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 767
Bme18I GGWCC 1 cut(s) 459
BmeRI GACNNNNNGTC 1 cut(s) 465
BmgBI CACGTC 2 cut(s) 141, 782
BmgT120I GGNCC 3 cut(s) 459, 829, 922
BmiI GGNNCC 4 cut(s) 345, 357, 461, 747
BmrFI CCNGG 1 cut(s) 767
BmsI GCATC 2 cut(s) 840, 937
BplI GAGNNNNNCTC 2 cut(s) 437, 469
BpmI CTGGAG 2 cut(s) 173, 704
BpuEI CTTGAG 1 cut(s) 902
BsaHI GRCGYC 3 cut(s) 62, 68, 74
BsaJI CCNNGG 4 cut(s) 336, 348, 360, 1059
BsaWI WCCGGW 2 cut(s) 742, 902
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 425, 1064
Bse1I ACTGG 4 cut(s) 494, 687, 840, 998
BseAI TCCGGA 1 cut(s) 902
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 4 cut(s) 336, 348, 360, 1059
BseGI GGATG 2 cut(s) 899, 1069
BseLI CCNNNNNNNGG 2 cut(s) 425, 1064
BseMII CTCAG 2 cut(s) 743, 876
BseNI ACTGG 4 cut(s) 494, 687, 840, 998
BseRI GAGGAG 9 cut(s) 41, 284, 287, 314, 317, 356, 386, 410, 860
BseX3I CGGCCG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 43
Bsh1285I CGRYCG 2 cut(s) 130, 203
BshFI GGCC 5 cut(s) 202, 335, 831, 924, 997
BsiEI CGRYCG 2 cut(s) 130, 203
BsiHKAI GWGCWC 2 cut(s) 44, 597
BsiSI CCGG 2 cut(s) 743, 903
BslI CCNNNNNNNGG 2 cut(s) 425, 1064
BsmAI GTCTC 1 cut(s) 658
BsnI GGCC 5 cut(s) 202, 335, 831, 924, 997
Bsp1286I GDGCHC 4 cut(s) 44, 348, 360, 597
Bsp13I TCCGGA 1 cut(s) 902
Bsp143I GATC 5 cut(s) 127, 217, 640, 808, 864
BspANI GGCC 5 cut(s) 202, 335, 831, 924, 997
BspCNI CTCAG 2 cut(s) 742, 877
BspEI TCCGGA 1 cut(s) 902
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 4 cut(s) 345, 357, 461, 747
BspMAI CTGCAG 1 cut(s) 474
BspPI GGATC 2 cut(s) 225, 648
BspTI CTTAAG 1 cut(s) 551
BsrI ACTGG 4 cut(s) 494, 687, 840, 998
BssECI CCNNGG 4 cut(s) 336, 348, 360, 1059
BssMI GATC 5 cut(s) 127, 217, 640, 808, 864
BssNI GRCGYC 3 cut(s) 62, 68, 74
BssT1I CCWWGG 3 cut(s) 336, 348, 360
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 3 cut(s) 548, 790, 934
Bst6I CTCTTC 2 cut(s) 278, 395
BstACI GRCGYC 3 cut(s) 62, 68, 74
BstAFI CTTAAG 1 cut(s) 551
BstC8I GCNNGC 3 cut(s) 51, 501, 1092
BstDEI CTNAG 2 cut(s) 729, 885
BstDSI CCRYGG 1 cut(s) 1059
BstEII GGTNACC 1 cut(s) 710
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 899, 1069
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 5 cut(s) 130, 220, 643, 811, 867
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 5 cut(s) 127, 217, 640, 808, 864
BstMCI CGRYCG 2 cut(s) 130, 203
BstMWI GCNNNNNNNGC 3 cut(s) 59, 630, 820
BstNI CCWGG 1 cut(s) 767
BstNSI RCATGY 1 cut(s) 1094
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 765
BstSFI CTRYAG 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 217, 864
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 2 cut(s) 217, 864
BstZI CGGCCG 1 cut(s) 200
BsuRI GGCC 5 cut(s) 202, 335, 831, 924, 997
BtgI CCRYGG 1 cut(s) 1059
BtrI CACGTC 2 cut(s) 141, 782
BtsCI GGATG 2 cut(s) 899, 1069
BtsIMutI CAGTG 2 cut(s) 501, 847
Cac8I GCNNGC 3 cut(s) 51, 501, 1092
CaiI CAGNNNCTG 2 cut(s) 469, 500
CciI TCATGA 1 cut(s) 192
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 459, 829, 922
CseI GACGC 3 cut(s) 51, 57, 63
Csp6I GTAC 1 cut(s) 451
CspCI CAANNNNNGTGG 2 cut(s) 668, 703
CviAII CATG 5 cut(s) 193, 456, 1081, 1091, 1098
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 2 cut(s) 729, 885
DpnI GATC 5 cut(s) 129, 219, 642, 810, 866
DpnII GATC 5 cut(s) 127, 217, 640, 808, 864
DrdI GACNNNNNNGTC 2 cut(s) 567, 967
DriI GACNNNNNGTC 1 cut(s) 465
DseDI GACNNNNNNGTC 2 cut(s) 567, 967
EaeI YGGCCR 2 cut(s) 200, 995
EagI CGGCCG 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 278, 395
Eam1105I GACNNNNNGTC 1 cut(s) 465
EarI CTCTTC 2 cut(s) 278, 395
EciI GGCGGA 4 cut(s) 224, 311, 338, 368
Ecl136II GAGCTC 2 cut(s) 42, 595
EclXI CGGCCG 1 cut(s) 200
Eco130I CCWWGG 3 cut(s) 336, 348, 360
Eco24I GRGCYC 4 cut(s) 44, 348, 360, 597
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 459
Eco52I CGGCCG 1 cut(s) 200
Eco53kI GAGCTC 2 cut(s) 42, 595
Eco57I CTGAAG 1 cut(s) 584
Eco91I GGTNACC 1 cut(s) 710
EcoICRI GAGCTC 2 cut(s) 42, 595
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoO65I GGTNACC 1 cut(s) 710
EcoRII CCWGG 1 cut(s) 765
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 336, 348, 360
EcoT38I GRGCYC 4 cut(s) 44, 348, 360, 597
ErhI CCWWGG 3 cut(s) 336, 348, 360
FaeI CATG 5 cut(s) 196, 459, 1084, 1094, 1101
FatI CATG 5 cut(s) 192, 455, 1080, 1090, 1097
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 4 cut(s) 32, 200, 294, 815
FokI GGATG 2 cut(s) 886, 1076
FriOI GRGCYC 4 cut(s) 44, 348, 360, 597
Fsp4HI GCNGC 4 cut(s) 32, 200, 294, 815
GlaI GCGC 1 cut(s) 177
GluI GCNGC 4 cut(s) 32, 200, 294, 815
GsuI CTGGAG 2 cut(s) 173, 704
HaeIII GGCC 5 cut(s) 202, 335, 831, 924, 997
HapII CCGG 2 cut(s) 743, 903
HgaI GACGC 3 cut(s) 51, 57, 63
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 3 cut(s) 62, 68, 74
Hin1II CATG 5 cut(s) 196, 459, 1084, 1094, 1101
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 466, 770
HpaII CCGG 2 cut(s) 743, 903
HphI GGTGA 4 cut(s) 36, 253, 722, 901
Hpy188I TCNGA 9 cut(s) 16, 132, 732, 763, 775, 786, 886, 1012, 1021
Hpy188III TCNNGA 5 cut(s) 152, 193, 664, 868, 903
Hpy99I CGWCG 9 cut(s) 67, 73, 79, 82, 85, 88, 145, 208, 794
HpyAV CCTTC 7 cut(s) 151, 244, 310, 373, 379, 559, 842
HpyCH4III ACNGT 3 cut(s) 548, 790, 934
HpyCH4IV ACGT 3 cut(s) 140, 781, 1110
HpyCH4V TGCA 6 cut(s) 472, 853, 978, 1090, 1094, 1120
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 630, 820
HpyF3I CTNAG 2 cut(s) 729, 885
HpySE526I ACGT 3 cut(s) 140, 781, 1110
Hsp92I GRCGYC 3 cut(s) 62, 68, 74
Hsp92II CATG 5 cut(s) 196, 459, 1084, 1094, 1101
HspAI GCGC 1 cut(s) 176
Kpn2I TCCGGA 1 cut(s) 902
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 127, 217, 640, 808, 864
LmnI GCTCC 7 cut(s) 28, 101, 343, 355, 592, 630, 745
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 840, 937
MaeII ACGT 3 cut(s) 140, 781, 1110
MaeIII GTNAC 2 cut(s) 710, 1106
MalI GATC 5 cut(s) 129, 219, 642, 810, 866
MboI GATC 5 cut(s) 127, 217, 640, 808, 864
MflI RGATCY 2 cut(s) 217, 864
MhlI GDGCHC 4 cut(s) 44, 348, 360, 597
MlsI TGGCCA 1 cut(s) 997
MluCI AATT 3 cut(s) 582, 755, 1069
MluNI TGGCCA 1 cut(s) 997
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 2 cut(s) 144, 860
Mox20I TGGCCA 1 cut(s) 997
MroI TCCGGA 1 cut(s) 902
MscI TGGCCA 1 cut(s) 997
MseI TTAA 2 cut(s) 480, 552
MslI CAYNNNNRTG 3 cut(s) 494, 1085, 1102
Msp20I TGGCCA 1 cut(s) 997
MspA1I CMGCKG 1 cut(s) 814
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 2 cut(s) 743, 903
MspR9I CCNGG 1 cut(s) 767
MvaI CCWGG 1 cut(s) 767
MwoI GCNNNNNNNGC 3 cut(s) 59, 630, 820
NdeII GATC 5 cut(s) 127, 217, 640, 808, 864
NlaIII CATG 5 cut(s) 196, 459, 1084, 1094, 1101
NlaIV GGNNCC 4 cut(s) 345, 357, 461, 747
NmuCI GTSAC 2 cut(s) 710, 1106
NspI RCATGY 1 cut(s) 1094
PaeI GCATGC 1 cut(s) 1094
PagI TCATGA 1 cut(s) 192
PcsI WCGNNNNNNNCGW 5 cut(s) 65, 71, 77, 89, 116
PfeI GAWTC 1 cut(s) 770
PkrI GCNGC 4 cut(s) 33, 201, 295, 816
Ple19I CGATCG 1 cut(s) 130
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PsiI TTATAA 1 cut(s) 581
Psp124BI GAGCTC 2 cut(s) 44, 597
Psp6I CCWGG 1 cut(s) 765
PspEI GGTNACC 1 cut(s) 710
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 4 cut(s) 345, 357, 461, 747
PspPI GGNCC 3 cut(s) 459, 829, 922
PstI CTGCAG 1 cut(s) 474
PstNI CAGNNNCTG 2 cut(s) 469, 500
PsuI RGATCY 2 cut(s) 217, 864
PvuI CGATCG 1 cut(s) 130
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 3 cut(s) 494, 1085, 1102
SacI GAGCTC 2 cut(s) 44, 597
SaqAI TTAA 2 cut(s) 480, 552
SatI GCNGC 4 cut(s) 32, 200, 294, 815
Sau3AI GATC 5 cut(s) 127, 217, 640, 808, 864
Sau96I GGNCC 3 cut(s) 459, 829, 922
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 1 cut(s) 767
SduI GDGCHC 4 cut(s) 44, 348, 360, 597
SfaNI GCATC 2 cut(s) 840, 937
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 1 cut(s) 459
SmiMI CAYNNNNRTG 3 cut(s) 494, 1085, 1102
SmlI CTYRAG 2 cut(s) 551, 917
SmoI CTYRAG 2 cut(s) 551, 917
SphI GCATGC 1 cut(s) 1094
Sse9I AATT 3 cut(s) 582, 755, 1069
SstI GAGCTC 2 cut(s) 44, 597
StyD4I CCNGG 1 cut(s) 765
StyI CCWWGG 3 cut(s) 336, 348, 360
TaaI ACNGT 3 cut(s) 548, 790, 934
TaiI ACGT 3 cut(s) 143, 784, 1113
TaqI TCGA 2 cut(s) 126, 792
TasI AATT 3 cut(s) 582, 755, 1069
TatI WGTACW 1 cut(s) 450
TauI GCSGC 3 cut(s) 202, 296, 817
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 2 cut(s) 480, 552
Tru9I TTAA 2 cut(s) 480, 552
TscAI CASTG 2 cut(s) 501, 847
TseFI GTSAC 2 cut(s) 710, 1106
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 2 cut(s) 710, 1106
TspDTI ATGAA 3 cut(s) 181, 888, 1004
TspGWI ACGGA 1 cut(s) 1076
TspRI CASTG 2 cut(s) 501, 847
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 459
XagI CCTNNNNNAGG 1 cut(s) 423
XceI RCATGY 1 cut(s) 1094
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.