Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

18131518 .. 18133280

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGATAATCTCAGATATCCAAGACGAAAAAAACAAAAAACCAAACCAAGCTACGGTATCGGAGGAGGACAAAGGGAAACGTGCAGGAGGTGTTAACGTACTGATTCCAGTGCCTGCTGGAACTAAGAAAAGGGATACTGTATACGAGGTAAAGACAAACCATCTCAAATTAATTTGGACTCAAAGGCAGCCTCCTATAATTGATGGGGACCTCTTTCAGTCCATCAAGCCTGATGATTGTCTGTGGAACATAGAGGATCAGACTGCTGTCTCCATTCTTTTGACTAAGAAGAATCAACAGAACTGGTGGAAATCTTTGTATTTTCAACCTGAACCCAGCAAACTATCCGACCTGGACTCCGAAACGCGCCAGACTGTGGAGAAGATGATGTTTGATCAAAGACAGAAGCAGAGGGGACTTCCAACTAGTGATGAGAATCATGAGATGCAAAAGCAGGAGCTATTGAAGAAGTTCATGGCTCAGCACCCAGAACATGAACTTTTCAATGCAGTAATAAAGATGGAAATTGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

179

Amino Acids

20.79

Weight (kDa)

6.44

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	32 - 97	1.3e-12	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	370
AclWI	GGATC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	55, 379
AgsI	TTSAA	3 cut(s)	329, 469, 508
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	53, 463
AluI	AGCT	2 cut(s)	53, 463
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	190
AseI	ATTAAT	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	4 cut(s)	171, 200, 233, 517
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	277
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	191
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	438
BoxI	GACNNNNGTC	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 379
Bse1I	ACTGG	2 cut(s)	110, 311
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	356
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	55, 379
BseMII	CTCAG	2 cut(s)	27, 497
BseNI	ACTGG	2 cut(s)	110, 311
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	202
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	224, 432
BslI	CCNNNNNNNGG	2 cut(s)	55, 379
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	224, 432
Bsp143I	GATC	2 cut(s)	259, 397
Bsp1720I	GCTNAGC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	26, 496
BspFNI	CGCG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	110, 311
BssMI	GATC	2 cut(s)	259, 397
BssNAI	GTATAC	1 cut(s)	145
Bst1107I	GTATAC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	58, 142, 379
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	4 cut(s)	13, 126, 288, 483
BstFNI	CGCG	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	2 cut(s)	262, 400
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	2 cut(s)	259, 397
BstNI	CCWGG	1 cut(s)	356
BstPAI	GACNNNNGTC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	202
BstZ17I	GTATAC	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	3 cut(s)	443, 478, 497
CviJI	RGCY	5 cut(s)	53, 193, 232, 463, 482
CviKI_1	RGCY	5 cut(s)	53, 193, 232, 463, 482
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	4 cut(s)	13, 126, 288, 483
DpnI	GATC	2 cut(s)	261, 399
DpnII	GATC	2 cut(s)	259, 397
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	3 cut(s)	446, 481, 500
FaiI	YATR	6 cut(s)	145, 200, 254, 444, 479, 498
FaqI	GGGAC	2 cut(s)	224, 432
FatI	CATG	3 cut(s)	442, 477, 496
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	1 cut(s)	191
GsaI	CCCAGC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	446, 481, 500
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	5 cut(s)	106, 181, 295, 359, 439
HpaI	GTTAAC	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	97, 145
Hpy188I	TCNGA	5 cut(s)	16, 64, 264, 352, 364
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	2 cut(s)	97, 145
HpyCH4III	ACNGT	3 cut(s)	58, 142, 379
HpyCH4IV	ACGT	2 cut(s)	82, 99
HpyCH4V	TGCA	3 cut(s)	86, 451, 512
HpyF3I	CTNAG	4 cut(s)	13, 126, 288, 483
HpySE526I	ACGT	2 cut(s)	82, 99
Hsp92II	CATG	3 cut(s)	446, 481, 500
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	259, 397
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	438
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	82, 99
MalI	GATC	2 cut(s)	261, 399
MboI	GATC	2 cut(s)	259, 397
MboII	GAAGA	3 cut(s)	304, 397, 481
MluCI	AATT	4 cut(s)	170, 174, 201, 528
MlyI	GAGTC	2 cut(s)	175, 353
MmeI	TCCRAC	2 cut(s)	375, 449
MnlI	CCTC	8 cut(s)	58, 61, 83, 142, 204, 224, 250, 408
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	3 cut(s)	96, 173, 538
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	370
NdeII	GATC	2 cut(s)	259, 397
NlaIII	CATG	3 cut(s)	446, 481, 500
NlaIV	GGNNCC	1 cut(s)	212
PagI	TCATGA	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	106, 295, 439
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	192
PleI	GAGTC	2 cut(s)	175, 353
PpsI	GAGTC	2 cut(s)	175, 353
PpuMI	RGGWCCY	1 cut(s)	211
PshAI	GACNNNNGTC	1 cut(s)	269
PshBI	ATTAAT	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	96, 173, 538
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	2 cut(s)	259, 397
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	175, 353
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	9 cut(s)	55, 85, 94, 102, 153, 216, 334, 357, 465
SfaNI	GCATC	1 cut(s)	438
SinI	GGWCC	1 cut(s)	211
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	4 cut(s)	170, 174, 201, 528
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	58, 142, 379
TaiI	ACGT	2 cut(s)	85, 102
TasI	AATT	4 cut(s)	170, 174, 201, 528
TfiI	GAWTC	3 cut(s)	106, 295, 439
Tru1I	TTAA	3 cut(s)	96, 173, 538
Tru9I	TTAA	3 cut(s)	96, 173, 538
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	466, 513
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.