Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

52734154 .. 52737893

Gene Structure 3740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG404600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGATAATCTCCGATATCCAAGAGGAGCAGCAACAGAGCTCAGCGCAAGCCAAATCGACGTCGGCGTCGGCTACGGCGTCGTCGTCGTCGGGAGCGAGAGTGGGAGCGACCTCGTTTAGCACGAAGTTCGATCGGAACAACACGTCGGGGTTTCTGGAGAAGGCGTTGGAGTTTCTGGCGCAGGAGAGCGACTTCATGAGGCGGCCGACGGCGGAGAGGGATCTGGTGGCGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGATGGAGGAGGAGAGGAAGAAGAGGTGGGCGGCGGAGGAGGAGGAGAAGAAGAAGAAGGAGGCGGAGGTCAAGGCCAAGGAGGAGCCCAAGGCGGAGCCCAAGGTGGTGGAGGAGAAGAAGGAGAAGGAGGTGGAGGAGAAGAGTGGCAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGCAGTACTCATGGACCCAGAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTAAAGTTTGGACTGAAGGGTCAGCCTCTTATAATTGATGGGGAGCTCTATCAGTCTATCAAGCCTGATGATTGCTTATGGAGCATAGAGGATCAAACTGCTGTCTCTATTCTCCTGACCAAACACAACCAACTGGAGTGGTGGAAAGCTCTGCTGAAAGGTGACCCTGAAATAGACACTCAGAAAGTTGAACCGGAGCCAAGCAAATTGTCTGACCTGGATTCAGAAACACGTCAGACTGTTGAAAAAATGATGGTAAAGTCAACTGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

277

Amino Acids

31.38

Weight (kDa)

5.88

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	153 - 227	4e-20	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AasI	GACNNNNNNGTC	2 cut(s)	67, 576
AatII	GACGTC	1 cut(s)	65
AciI	CCGC	7 cut(s)	205, 215, 245, 299, 302, 332, 362
AclWI	GGATC	2 cut(s)	231, 657
AcoI	YGGCCR	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	593
AcyI	GRCGYC	3 cut(s)	62, 68, 80
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflIII	ACRYGT	2 cut(s)	144, 788
AgsI	TTSAA	3 cut(s)	241, 749, 803
AhdI	GACNNNNNGTC	1 cut(s)	474
AjiI	CACGTC	2 cut(s)	147, 791
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	3 cut(s)	42, 604, 707
AluI	AGCT	3 cut(s)	42, 604, 707
Alw21I	GWGCWC	2 cut(s)	44, 606
Alw26I	GTCTC	1 cut(s)	667
AlwI	GGATC	2 cut(s)	231, 657
AlwNI	CAGNNNCTG	2 cut(s)	478, 509
AoxI	GGCC	2 cut(s)	206, 342
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	49, 184
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	259, 731
AvaII	GGWCC	1 cut(s)	468
BanII	GRGCYC	4 cut(s)	44, 357, 369, 606
Bbv12I	GWGCWC	2 cut(s)	44, 606
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	265, 590, 805
BceAI	ACGGC	2 cut(s)	93, 228
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	667
BfmI	CTRYAG	1 cut(s)	479
BisI	GCNGC	3 cut(s)	32, 206, 300
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	3 cut(s)	33, 207, 301
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	1 cut(s)	776
Bme18I	GGWCC	1 cut(s)	468
BmeRI	GACNNNNNGTC	1 cut(s)	474
BmgBI	CACGTC	2 cut(s)	147, 791
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	4 cut(s)	354, 366, 470, 756
BmrFI	CCNGG	1 cut(s)	776
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpmI	CTGGAG	2 cut(s)	179, 713
Bpu1102I	GCTNAGC	1 cut(s)	43
BsaHI	GRCGYC	3 cut(s)	62, 68, 80
BsaJI	CCNNGG	3 cut(s)	345, 357, 369
BsaWI	WCCGGW	1 cut(s)	751
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	503, 696
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	3 cut(s)	345, 357, 369
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	2 cut(s)	57, 752
BseNI	ACTGG	2 cut(s)	503, 696
BseRI	GAGGAG	9 cut(s)	41, 290, 293, 320, 323, 326, 365, 395, 419
BseX3I	CGGCCG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	136, 209
BshFI	GGCC	2 cut(s)	208, 344
BsiEI	CGRYCG	2 cut(s)	136, 209
BsiHKAI	GWGCWC	2 cut(s)	44, 606
BsiSI	CCGG	1 cut(s)	752
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	667
BsnI	GGCC	2 cut(s)	208, 344
Bsp1286I	GDGCHC	4 cut(s)	44, 357, 369, 606
Bsp143I	GATC	3 cut(s)	133, 223, 649
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	7 cut(s)	205, 215, 245, 299, 302, 332, 362
BspANI	GGCC	2 cut(s)	208, 344
BspCNI	CTCAG	2 cut(s)	56, 751
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	354, 366, 470, 756
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	2 cut(s)	231, 657
BsrI	ACTGG	2 cut(s)	503, 696
BssECI	CCNNGG	3 cut(s)	345, 357, 369
BssMI	GATC	3 cut(s)	133, 223, 649
BssNI	GRCGYC	3 cut(s)	62, 68, 80
BssT1I	CCWWGG	3 cut(s)	345, 357, 369
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	557, 799
Bst6I	CTCTTC	2 cut(s)	284, 404
BstACI	GRCGYC	3 cut(s)	62, 68, 80
BstC8I	GCNNGC	2 cut(s)	51, 510
BstDEI	CTNAG	2 cut(s)	43, 738
BstEII	GGTNACC	1 cut(s)	719
BstHHI	GCGC	2 cut(s)	49, 184
BstKTI	GATC	3 cut(s)	136, 226, 652
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	3 cut(s)	133, 223, 649
BstMCI	CGRYCG	2 cut(s)	136, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	639
BstNI	CCWGG	1 cut(s)	776
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	1 cut(s)	774
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	208, 344
BtrI	CACGTC	2 cut(s)	147, 791
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	51, 510
CaiI	CAGNNNCTG	2 cut(s)	478, 509
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	2 cut(s)	49, 184
Cfr13I	GGNCC	1 cut(s)	468
CseI	GACGC	2 cut(s)	57, 69
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	677, 712
CviAII	CATG	2 cut(s)	199, 465
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	43, 738
DpnI	GATC	3 cut(s)	135, 225, 651
DpnII	GATC	3 cut(s)	133, 223, 649
DrdI	GACNNNNNNGTC	2 cut(s)	67, 576
DriI	GACNNNNNGTC	1 cut(s)	474
DseDI	GACNNNNNNGTC	2 cut(s)	67, 576
EaeI	YGGCCR	1 cut(s)	206
EagI	CGGCCG	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	284, 404
Eam1105I	GACNNNNNGTC	1 cut(s)	474
EarI	CTCTTC	2 cut(s)	284, 404
EciI	GGCGGA	4 cut(s)	230, 317, 347, 377
Ecl136II	GAGCTC	2 cut(s)	42, 604
EclXI	CGGCCG	1 cut(s)	206
Eco130I	CCWWGG	3 cut(s)	345, 357, 369
Eco24I	GRGCYC	4 cut(s)	44, 357, 369, 606
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	468
Eco52I	CGGCCG	1 cut(s)	206
Eco53kI	GAGCTC	2 cut(s)	42, 604
Eco57I	CTGAAG	1 cut(s)	593
Eco91I	GGTNACC	1 cut(s)	719
EcoICRI	GAGCTC	2 cut(s)	42, 604
EcoO65I	GGTNACC	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	774
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	3 cut(s)	345, 357, 369
EcoT38I	GRGCYC	4 cut(s)	44, 357, 369, 606
ErhI	CCWWGG	3 cut(s)	345, 357, 369
FaeI	CATG	2 cut(s)	202, 468
FaiI	YATR	8 cut(s)	200, 452, 466, 494, 540, 590, 637, 644
FatI	CATG	2 cut(s)	198, 464
Fnu4HI	GCNGC	3 cut(s)	32, 206, 300
FriOI	GRGCYC	4 cut(s)	44, 357, 369, 606
Fsp4HI	GCNGC	3 cut(s)	32, 206, 300
GlaI	GCGC	2 cut(s)	48, 183
GluI	GCNGC	3 cut(s)	32, 206, 300
GsuI	CTGGAG	2 cut(s)	179, 713
HaeIII	GGCC	2 cut(s)	208, 344
HapII	CCGG	1 cut(s)	752
HgaI	GACGC	2 cut(s)	57, 69
HhaI	GCGC	2 cut(s)	49, 184
Hin1I	GRCGYC	3 cut(s)	62, 68, 80
Hin1II	CATG	2 cut(s)	202, 468
Hin6I	GCGC	2 cut(s)	47, 182
HinP1I	GCGC	2 cut(s)	47, 182
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HinfI	GANTC	2 cut(s)	475, 779
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	2 cut(s)	259, 731
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	6 cut(s)	16, 138, 741, 772, 784, 795
Hpy188III	TCNNGA	4 cut(s)	93, 158, 199, 673
Hpy8I	GTNNAC	1 cut(s)	822
Hpy99I	CGWCG	9 cut(s)	64, 67, 73, 85, 88, 91, 94, 151, 214
HpyAV	CCTTC	6 cut(s)	157, 250, 319, 382, 388, 568
HpyCH4III	ACNGT	2 cut(s)	557, 799
HpyCH4IV	ACGT	3 cut(s)	62, 146, 790
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	639
HpyF3I	CTNAG	2 cut(s)	43, 738
HpySE526I	ACGT	3 cut(s)	62, 146, 790
Hsp92I	GRCGYC	3 cut(s)	62, 68, 80
Hsp92II	CATG	2 cut(s)	202, 468
HspAI	GCGC	2 cut(s)	47, 182
Kzo9I	GATC	3 cut(s)	133, 223, 649
LmnI	GCTCC	9 cut(s)	28, 95, 107, 352, 364, 454, 601, 639, 754
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	3 cut(s)	62, 146, 790
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	3 cut(s)	135, 225, 651
MboI	GATC	3 cut(s)	133, 223, 649
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	4 cut(s)	44, 357, 369, 606
MluCI	AATT	2 cut(s)	591, 764
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	150
MseI	TTAA	2 cut(s)	489, 832
MslI	CAYNNNNRTG	1 cut(s)	503
MspI	CCGG	1 cut(s)	752
MspR9I	CCNGG	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	776
MwoI	GCNNNNNNNGC	1 cut(s)	639
NdeII	GATC	3 cut(s)	133, 223, 649
NlaIII	CATG	2 cut(s)	202, 468
NlaIV	GGNNCC	4 cut(s)	354, 366, 470, 756
NmuCI	GTSAC	1 cut(s)	719
PagI	TCATGA	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	5 cut(s)	65, 77, 83, 95, 122
PfeI	GAWTC	1 cut(s)	779
PkrI	GCNGC	3 cut(s)	33, 207, 301
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PsiI	TTATAA	1 cut(s)	590
Psp124BI	GAGCTC	2 cut(s)	44, 606
Psp6I	CCWGG	1 cut(s)	774
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	4 cut(s)	354, 366, 470, 756
PspPI	GGNCC	1 cut(s)	468
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	2 cut(s)	478, 509
PsuI	RGATCY	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	2 cut(s)	44, 606
SaqAI	TTAA	2 cut(s)	489, 832
SatI	GCNGC	3 cut(s)	32, 206, 300
Sau3AI	GATC	3 cut(s)	133, 223, 649
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	1 cut(s)	461
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	4 cut(s)	44, 357, 369, 606
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	591, 764
SsiI	CCGC	7 cut(s)	205, 215, 245, 299, 302, 332, 362
SstI	GAGCTC	2 cut(s)	44, 606
StyD4I	CCNGG	1 cut(s)	774
StyI	CCWWGG	3 cut(s)	345, 357, 369
TaaI	ACNGT	2 cut(s)	557, 799
TaiI	ACGT	3 cut(s)	65, 149, 793
TaqI	TCGA	2 cut(s)	59, 132
TasI	AATT	2 cut(s)	591, 764
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	2 cut(s)	208, 302
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	2 cut(s)	489, 832
Tru9I	TTAA	2 cut(s)	489, 832
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	468
ZraI	GACGTC	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.