Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

16442701 .. 16443834

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGATAATCTCAGACTTCCAAGAAGAAGAAAACGAAACCCACACCAAAGTCACAGCACCACCCTCTGAGTCATCATCATCGCTTAAGGCAGAGAAGAAAAACGTCAAGGTGGAGGAAGACAAAGGGAAAGTTGTAGGGTCCAAACTAGTTCCGAACAAAGGGAATGGCCTTGATCTAGATAAGTACTCATGGACACAAAGCCTGCAAGAGGTTAATATAGTGATCCCAGTGCCTGCCGGAACTAAATCAAGGGATGTTGTGTACGAGGCAAAGGCGAAGCATCTTAGGTTTGGACTCAAGGATCAGCCAACTCCTATTATCGATGGTGATCTGTTTCAGTCTATCAAGCCTGATGAGTGTTTGTGGAGCATAGAGGATCAGAGTGCTGTCTCTATTCTGTTGACAAAGCAAAACCAAACGGACTGGTGGAAGGCTTTGGTGAAAGGTGATCCAGAGATTGACACTCAAAAGGTTGAACCTGAGCCTAGTAAACTGTCCGATCTGGATTCTGAGACGCGCCGGACGGTAGAGAAGATGATGTTTGACCAGAGGCAGAAGCAGATGGGGCGTCCGACTAGTGATGAGATGCAGCAGCAAGAATTGATGAAGAAGTTCATGGAACAGCATCCGAACATGGACTTTTCAAAGGTTAAGATGATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

223

Amino Acids

25.31

Weight (kDa)

5.29

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	62 - 137	9.7e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	520
AclWI	GGATC	4 cut(s)	220, 312, 387, 446
AcyI	GRCGYC	1 cut(s)	571
AfaI	GTAC	2 cut(s)	188, 266
AfiI	CCNNNNNNNGG	2 cut(s)	161, 211
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	479, 648
AhlI	ACTAGT	2 cut(s)	148, 578
Alw26I	GTCTC	2 cut(s)	397, 509
AlwI	GGATC	4 cut(s)	220, 312, 387, 446
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	592, 595
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	3 cut(s)	341, 454, 461
AvaII	GGWCC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	604, 607
BccI	CCATC	2 cut(s)	320, 559
BcoDI	GTCTC	2 cut(s)	397, 509
BcuI	ACTAGT	2 cut(s)	148, 578
BfaI	CTAG	4 cut(s)	149, 179, 489, 579
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	593, 596
BlsI	GCNGC	2 cut(s)	594, 597
BmcAI	AGTACT	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	142
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	3 cut(s)	292, 579, 637
BmuI	ACTGGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 211
Bse1I	ACTGG	2 cut(s)	230, 431
Bse8I	GATNNNNATC	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	324
BseGI	GGATG	2 cut(s)	262, 628
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	161, 211
BseMII	CTCAG	4 cut(s)	27, 60, 474, 504
BseNI	ACTGG	2 cut(s)	230, 431
BseXI	GCAGC	2 cut(s)	604, 607
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	240, 523
BslI	CCNNNNNNNGG	2 cut(s)	161, 211
BsmAI	GTCTC	2 cut(s)	397, 509
BsmBI	CGTCTC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	4 cut(s)	26, 61, 475, 505
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	4 cut(s)	220, 312, 387, 446
BspTI	CTTAAG	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	230, 431
BssMI	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
BssNI	GRCGYC	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	498, 529
BstACI	GRCGYC	1 cut(s)	571
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	206, 237
BstDEI	CTNAG	5 cut(s)	13, 69, 287, 483, 513
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	262, 628
BstFNI	CGCG	1 cut(s)	520
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	7 cut(s)	178, 228, 307, 334, 382, 454, 505
BstMAI	GTCTC	2 cut(s)	397, 509
BstMBI	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	568
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	604, 607
BstV2I	GAAGAC	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	171
BsuTUI	ATCGAT	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	262, 628
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	206, 237
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	2 cut(s)	526, 560
Csp6I	GTAC	2 cut(s)	187, 265
CviAII	CATG	3 cut(s)	192, 619, 637
CviJI	RGCY	6 cut(s)	171, 204, 310, 352, 437, 487
CviKI_1	RGCY	6 cut(s)	171, 204, 310, 352, 437, 487
CviQI	GTAC	2 cut(s)	187, 265
DdeI	CTNAG	5 cut(s)	13, 69, 287, 483, 513
DpnI	GATC	7 cut(s)	177, 227, 306, 333, 381, 453, 504
DpnII	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
Eco47I	GGWCC	1 cut(s)	141
EcoNI	CCTNNNNNAGG	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	3 cut(s)	195, 622, 640
FaiI	YATR	5 cut(s)	193, 221, 374, 620, 638
FatI	CATG	3 cut(s)	191, 618, 636
Fnu4HI	GCNGC	2 cut(s)	593, 596
FokI	GGATG	2 cut(s)	269, 615
Fsp4HI	GCNGC	2 cut(s)	593, 596
FspBI	CTAG	4 cut(s)	149, 179, 489, 579
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	2 cut(s)	593, 596
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	240, 523
HgaI	GACGC	2 cut(s)	526, 560
HhaI	GCGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	571
Hin1II	CATG	3 cut(s)	195, 622, 640
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	71, 297, 509
HpaII	CCGG	2 cut(s)	240, 523
HphI	GGTGA	3 cut(s)	341, 454, 461
Hpy166II	GTNNAC	3 cut(s)	265, 405, 494
Hpy188I	TCNGA	8 cut(s)	16, 70, 156, 384, 502, 514, 576, 633
Hpy188III	TCNNGA	3 cut(s)	179, 455, 506
Hpy8I	GTNNAC	3 cut(s)	265, 405, 494
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	498, 529
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	208, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	568
HpyF3I	CTNAG	5 cut(s)	13, 69, 287, 483, 513
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	195, 622, 640
HspAI	GCGC	1 cut(s)	520
Kzo9I	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	604, 607
LweI	GCATC	3 cut(s)	292, 579, 637
MaeI	CTAG	4 cut(s)	149, 179, 489, 579
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	7 cut(s)	177, 227, 306, 333, 381, 453, 504
MboI	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
MboII	GAAGA	6 cut(s)	38, 41, 109, 131, 547, 622
MluCI	AATT	1 cut(s)	602
MlyI	GAGTC	2 cut(s)	80, 291
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	6 cut(s)	76, 109, 205, 262, 370, 546
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	3 cut(s)	87, 216, 654
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	2 cut(s)	240, 523
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	1 cut(s)	568
NdeII	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
NlaIII	CATG	3 cut(s)	195, 622, 640
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	594, 597
PleI	GAGTC	2 cut(s)	79, 291
PpsI	GAGTC	2 cut(s)	79, 291
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	188, 266
RsaNI	GTAC	2 cut(s)	187, 265
SaqAI	TTAA	3 cut(s)	87, 216, 654
SatI	GCNGC	2 cut(s)	593, 596
Sau3AI	GATC	7 cut(s)	175, 225, 304, 331, 379, 451, 502
Sau96I	GGNCC	1 cut(s)	141
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	2 cut(s)	80, 291
SetI	ASST	8 cut(s)	108, 114, 216, 293, 451, 477, 484, 654
SfaNI	GCATC	3 cut(s)	292, 579, 637
SinI	GGWCC	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	86, 299
SmoI	CTYRAG	2 cut(s)	86, 299
SpeI	ACTAGT	2 cut(s)	148, 578
Sse9I	AATT	1 cut(s)	602
SspMI	CTAG	4 cut(s)	149, 179, 489, 579
TaaI	ACNGT	2 cut(s)	498, 529
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	602
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	3 cut(s)	87, 216, 654
Tru9I	TTAA	3 cut(s)	87, 216, 654
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	592, 595
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	607, 623
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	237
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	141
XagI	CCTNNNNNAGG	1 cut(s)	209
XbaI	TCTAGA	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	4 cut(s)	149, 179, 489, 579
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.