Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

29398548 .. 29400916

Gene Structure 2369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G310800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGATAATCTCCGATATCCAAGAGGACCAGAACGCCCCCGAAACAAAGCCGTCCCAGGCATCGTCGTCGTCTAAAGCGGCGTCGTTTACCGCGAAGTTGGATCGCTCGAATCCCCTAGGGTTTGTGGAGAAGGTTTTCGACTTTTTGGCTCAAGAAAGCGACTTCCTTAAGAAATCGACGGCGGAGAAGGAGGTCCTGTCCGTCGTACGCGCAGTGAGGGAGAAGGAGATTAAGAAGGTGGAAGAGGAGAAGAAGAAGAAGAGGCAGGAGGAGGAGGAGGAGAAGACGAAGAAGAAGGCCAAGGAAGAAGCTAAAGCTGTAGAGAAAAAGGAGACTCCTTTGGAGGAGGGCAAGAAAGAGAAGAATGGCTTGAGAGTTCCAAACAAAGGCAATGGACTTGATTTGGAGAAATACTCATGGACGCAGAGCCTTCAGGAGGTTAATGTCGTTATTCCAGTGCCTCCTGGAACTAAATCTCGGTCCGTTGTGTGCGAAATAAAGAAAAATCATTTGAAGTTTGGAATGAAGGGTCAGCCTCCTATTATTGATGGGGAGCTTTATCAGTCTATCAAGCCTGATGATTGTTACTGGAGCATAGAGGATCAGACTGCTGTCTCTATTCTTCTGACCAAGCACAATCAAATGGAGTGGTGGAAAAGTTTGGTGAAAGGTGATCCCGAGATAGACACTCAAAAGGTCGACCCTGAGCCCAGCAAATTATCTGACCTGGATTCTGAAACCAGGCAGACTGTTGAAAAGATGATGTTTGATCAGAGACAGAAGCAGATGGGGCTCCCGACCAGTGATGAATTGCAAAAACAAGATATCCTAAAGAAATTCATGTCGGAGCATCCGGAGATGGATTTCTCAAGGGCCAAGATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

297

Amino Acids

33.87

Weight (kDa)

6.13

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	2 cut(s)	95, 213
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	3 cut(s)	80, 93, 185
AclWI	GGATC	3 cut(s)	111, 612, 671
AcsI	RAATTY	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	389, 439
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	517, 758
AjnI	CCWGG	4 cut(s)	57, 466, 729, 743
AluBI	AGCT	3 cut(s)	314, 320, 559
AluI	AGCT	3 cut(s)	314, 320, 559
Alw26I	GTCTC	3 cut(s)	329, 622, 772
AlwI	GGATC	3 cut(s)	111, 612, 671
Ama87I	CYCGRG	1 cut(s)	680
Aor13HI	TCCGGA	1 cut(s)	856
AoxI	GGCC	2 cut(s)	300, 876
ApoI	RAATTY	1 cut(s)	839
Asp700I	GAANNNNTTC	1 cut(s)	137
AspA2I	CCTAGG	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	4 cut(s)	28, 196, 483, 876
AsuHPI	GGTGA	2 cut(s)	679, 686
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	3 cut(s)	28, 196, 483
AvrII	CCTAGG	1 cut(s)	118
BanII	GRGCYC	2 cut(s)	714, 798
BbsI	GAAGAC	1 cut(s)	293
BccI	CCATC	3 cut(s)	545, 784, 856
BceAI	ACGGC	2 cut(s)	37, 198
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	4 cut(s)	59, 468, 731, 745
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	3 cut(s)	329, 622, 772
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	170
BisI	GCNGC	1 cut(s)	81
BlnI	CCTAGG	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	4 cut(s)	59, 468, 731, 745
Bme18I	GGWCC	3 cut(s)	28, 196, 483
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	4 cut(s)	28, 196, 483, 876
BmiI	GGNNCC	1 cut(s)	797
BmrFI	CCNGG	4 cut(s)	59, 468, 731, 745
BmsI	GCATC	2 cut(s)	71, 862
BoxI	GACNNNNGTC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	613
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	3 cut(s)	138, 394, 856
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	57, 118, 303
BsaWI	WCCGGW	1 cut(s)	856
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 439
Bse1I	ACTGG	3 cut(s)	458, 596, 804
Bse3DI	GCAATG	1 cut(s)	400
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	4 cut(s)	59, 468, 731, 745
BseDI	CCNNGG	3 cut(s)	57, 118, 303
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	2 cut(s)	389, 439
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	3 cut(s)	458, 596, 804
BseRI	GAGGAG	6 cut(s)	263, 287, 290, 293, 296, 362
BseYI	CCCAGC	1 cut(s)	713
Bsh1236I	CGCG	2 cut(s)	95, 213
BshFI	GGCC	2 cut(s)	302, 878
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	1 cut(s)	857
BsiWI	CGTACG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	389, 439
BsmAI	GTCTC	3 cut(s)	329, 622, 772
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	302, 878
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	2 cut(s)	714, 798
Bsp13I	TCCGGA	1 cut(s)	856
Bsp143I	GATC	4 cut(s)	103, 604, 676, 772
BspACI	CCGC	3 cut(s)	80, 93, 185
BspANI	GGCC	2 cut(s)	302, 878
BspCNI	CTCAG	1 cut(s)	700
BspEI	TCCGGA	1 cut(s)	856
BspFNI	CGCG	2 cut(s)	95, 213
BspLI	GGNNCC	1 cut(s)	797
BspPI	GGATC	3 cut(s)	111, 612, 671
BspTI	CTTAAG	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	458, 596, 804
BssECI	CCNNGG	3 cut(s)	57, 118, 303
BssMI	GATC	4 cut(s)	103, 604, 676, 772
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	2 cut(s)	118, 303
Bst2UI	CCWGG	4 cut(s)	59, 468, 731, 745
Bst4CI	ACNGT	2 cut(s)	754, 888
Bst6I	CTCTTC	2 cut(s)	240, 257
BstACI	GRCGYC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	708
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	853
BstFNI	CGCG	2 cut(s)	95, 213
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	4 cut(s)	106, 607, 679, 775
BstMAI	GTCTC	3 cut(s)	329, 622, 772
BstMBI	GATC	4 cut(s)	103, 604, 676, 772
BstMWI	GCNNNNNNNGC	1 cut(s)	793
BstNI	CCWGG	4 cut(s)	59, 468, 731, 745
BstPAI	GACNNNNGTC	1 cut(s)	614
BstSCI	CCNGG	4 cut(s)	57, 466, 729, 743
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	2 cut(s)	95, 213
BstV2I	GAAGAC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	302, 878
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	222, 465, 811
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	4 cut(s)	28, 196, 483, 876
CpoI	CGGWCCG	1 cut(s)	483
CseI	GACGC	2 cut(s)	72, 433
Csp6I	GTAC	1 cut(s)	209
CspCI	CAANNNNNGTGG	2 cut(s)	632, 667
CspI	CGGWCCG	1 cut(s)	483
CviAII	CATG	2 cut(s)	420, 844
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	4 cut(s)	105, 606, 678, 774
DpnII	GATC	4 cut(s)	103, 604, 676, 772
Eam1104I	CTCTTC	2 cut(s)	240, 257
EarI	CTCTTC	2 cut(s)	240, 257
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	118, 303
Eco24I	GRGCYC	2 cut(s)	714, 798
Eco32I	GATATC	2 cut(s)	19, 829
Eco47I	GGWCC	3 cut(s)	28, 196, 483
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	680
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	4 cut(s)	57, 466, 729, 743
EcoRV	GATATC	2 cut(s)	19, 829
EcoT14I	CCWWGG	2 cut(s)	118, 303
EcoT38I	GRGCYC	2 cut(s)	714, 798
ErhI	CCWWGG	2 cut(s)	118, 303
FaeI	CATG	2 cut(s)	423, 847
FaiI	YATR	3 cut(s)	421, 599, 845
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	419, 843
FbaI	TGATCA	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	840
FriOI	GRGCYC	2 cut(s)	714, 798
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	302, 878
HapII	CCGG	1 cut(s)	857
HgaI	GACGC	2 cut(s)	72, 433
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	423, 847
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	3 cut(s)	112, 337, 734
HpaII	CCGG	1 cut(s)	857
HphI	GGTGA	2 cut(s)	679, 686
Hpy166II	GTNNAC	2 cut(s)	90, 703
Hpy188I	TCNGA	7 cut(s)	16, 609, 630, 727, 739, 777, 850
Hpy188III	TCNNGA	5 cut(s)	155, 437, 680, 799, 857
Hpy8I	GTNNAC	2 cut(s)	90, 703
Hpy99I	CGWCG	5 cut(s)	70, 73, 88, 184, 209
HpyAV	CCTTC	7 cut(s)	127, 184, 220, 232, 292, 443, 523
HpyCH4III	ACNGT	2 cut(s)	754, 888
HpyCH4V	TGCA	1 cut(s)	817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	793
HpyF3I	CTNAG	1 cut(s)	708
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	423, 847
HspAI	GCGC	1 cut(s)	213
Kpn2I	TCCGGA	1 cut(s)	856
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	4 cut(s)	103, 604, 676, 772
LmnI	GCTCC	4 cut(s)	556, 594, 801, 850
LweI	GCATC	2 cut(s)	71, 862
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	4 cut(s)	105, 606, 678, 774
MboI	GATC	4 cut(s)	103, 604, 676, 772
MhlI	GDGCHC	2 cut(s)	714, 798
MluCI	AATT	3 cut(s)	719, 812, 839
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	81, 828
MroI	TCCGGA	1 cut(s)	856
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	3 cut(s)	171, 234, 444
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	1 cut(s)	857
MspR9I	CCNGG	4 cut(s)	59, 468, 731, 745
MvaI	CCWGG	4 cut(s)	59, 468, 731, 745
MvnI	CGCG	2 cut(s)	95, 213
MwoI	GCNNNNNNNGC	1 cut(s)	793
NdeII	GATC	4 cut(s)	103, 604, 676, 772
NlaIII	CATG	2 cut(s)	423, 847
NlaIV	GGNNCC	1 cut(s)	797
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	112, 734
Pfl23II	CGTACG	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	196
PshAI	GACNNNNGTC	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	4 cut(s)	57, 466, 729, 743
PspFI	CCCAGC	1 cut(s)	713
PspGI	CCWGG	4 cut(s)	57, 466, 729, 743
PspLI	CGTACG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	797
PspPI	GGNCC	4 cut(s)	28, 196, 483, 876
PspPPI	RGGWCCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
Rsr2I	CGGWCCG	1 cut(s)	483
RsrII	CGGWCCG	1 cut(s)	483
SalI	GTCGAC	1 cut(s)	701
SaqAI	TTAA	3 cut(s)	171, 234, 444
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	4 cut(s)	103, 604, 676, 772
Sau96I	GGNCC	4 cut(s)	28, 196, 483, 876
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	4 cut(s)	59, 468, 731, 745
SduI	GDGCHC	2 cut(s)	714, 798
SfaNI	GCATC	2 cut(s)	71, 862
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	3 cut(s)	28, 196, 483
SmlI	CTYRAG	4 cut(s)	153, 170, 373, 871
SmoI	CTYRAG	4 cut(s)	153, 170, 373, 871
Sse9I	AATT	3 cut(s)	719, 812, 839
SsiI	CCGC	3 cut(s)	80, 93, 185
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	4 cut(s)	57, 466, 729, 743
StyI	CCWWGG	2 cut(s)	118, 303
TaaI	ACNGT	2 cut(s)	754, 888
TaqI	TCGA	4 cut(s)	110, 141, 179, 702
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	719, 812, 839
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	112, 734
Tru1I	TTAA	3 cut(s)	171, 234, 444
Tru9I	TTAA	3 cut(s)	171, 234, 444
TscAI	CASTG	3 cut(s)	222, 465, 811
TspDTI	ATGAA	3 cut(s)	542, 825, 832
TspGWI	ACGGA	2 cut(s)	193, 475
TspRI	CASTG	3 cut(s)	222, 465, 811
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	3 cut(s)	28, 196, 483
XagI	CCTNNNNNAGG	1 cut(s)	437
XapI	RAATTY	1 cut(s)	839
XmaJI	CCTAGG	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.