Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

66707454 .. 66709976

Gene Structure 2523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGATAATCTCCGATATCCAAGAGGAGCAGCAACAGAGCTCAGCGCAAGCCAAATCGACGTCGGCGTCGTCGTCGTCGTCGGCGGCGGCGAGAGTGGGAGCGACCTCGTTTAGCACGAAGTTCGATCGGAACAACACGTCGGGGTTTCTGGAGAAGGCGTTGGAGTTTCTGGCGCAGGAGAGTGACTTCATGAGGCGGCCGACGGCGGAGAGGGATCTGGTGGCGATATTTAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGATGGAGGAGGAGAGGAAGAAGAGGTGGGCGGCGGAGGAGGAGGAGAAGAAGAAGAAGGAGGCGGAGGTCAAGGCCAAGGAGGAGCCCAAGGCGGAGCCCAAGGTGGTGGAGGAGAAGAAGGAGAAGGAGGTGGAGGAGAAGAGTGGCAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAGTACTCATGGACCCAGAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTGAAGTTTGGACTGAAGGGTCAGCCTCTTATAATTGATGGGGAGCTCTATCAGTCTATCAAGCCTGATGATTGCTTATGGAGCATAGAGGATCAAACTGCTGTCTCTATTCTCCTGACCAAACACAACCAACTGGAGTGGTGGAAAGCTCTGCTGAAAGGTGACCCTGAAATAGACACTCAGAAAGTTGAACCGGAGCCAAGCAAATTGTCTGACCTGGATTCAGAAACACGTCAGACCGTCGAAAAAATGATGTTTGATCAGCGGCAGAAGCAGATGGGCCTTCCAACCAGTGAGGAGATGCAGAAGCAGGAGATCTTGAAGAAATTTATGTCTGAGCATCCGGAAATGGACTTCTCAAGGGCCAAGATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

309

Amino Acids

35.47

Weight (kDa)

6.05

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	150 - 225	2.2e-20	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AasI	GACNNNNNNGTC	2 cut(s)	67, 570
AatII	GACGTC	1 cut(s)	65
AccIII	TCCGGA	1 cut(s)	895
AclWI	GGATC	2 cut(s)	225, 651
AcoI	YGGCCR	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	878
AcuI	CTGAAG	2 cut(s)	575, 587
AcyI	GRCGYC	2 cut(s)	62, 68
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	2 cut(s)	138, 782
AgsI	TTSAA	2 cut(s)	743, 874
AhdI	GACNNNNNGTC	1 cut(s)	468
AjiI	CACGTC	2 cut(s)	141, 785
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	3 cut(s)	42, 598, 701
AluI	AGCT	3 cut(s)	42, 598, 701
Alw21I	GWGCWC	2 cut(s)	44, 600
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	225, 651
AlwNI	CAGNNNCTG	2 cut(s)	472, 503
Aor13HI	TCCGGA	1 cut(s)	895
AoxI	GGCC	4 cut(s)	200, 336, 832, 915
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	878
AspLEI	GCGC	2 cut(s)	49, 178
AspS9I	GGNCC	3 cut(s)	462, 832, 915
AsuHPI	GGTGA	2 cut(s)	253, 725
AvaII	GGWCC	1 cut(s)	462
BanII	GRGCYC	4 cut(s)	44, 351, 363, 600
Bbv12I	GWGCWC	2 cut(s)	44, 600
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	259, 584, 823
BceAI	ACGGC	1 cut(s)	222
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	770
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	1 cut(s)	661
BfmI	CTRYAG	1 cut(s)	473
BglII	AGATCT	1 cut(s)	867
BisI	GCNGC	6 cut(s)	32, 87, 90, 200, 294, 818
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	6 cut(s)	33, 88, 91, 201, 295, 819
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	1 cut(s)	770
Bme18I	GGWCC	1 cut(s)	462
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmgBI	CACGTC	2 cut(s)	141, 785
BmgT120I	GGNCC	3 cut(s)	462, 832, 915
BmiI	GGNNCC	4 cut(s)	348, 360, 464, 750
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	2 cut(s)	843, 901
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	2 cut(s)	173, 707
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	895
BsaHI	GRCGYC	2 cut(s)	62, 68
BsaJI	CCNNGG	3 cut(s)	339, 351, 363
BsaWI	WCCGGW	2 cut(s)	745, 895
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	497, 690, 843
BseAI	TCCGGA	1 cut(s)	895
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	3 cut(s)	339, 351, 363
BseGI	GGATG	1 cut(s)	892
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	3 cut(s)	57, 746, 879
BseNI	ACTGG	3 cut(s)	497, 690, 843
BseX3I	CGGCCG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	130, 203
BshFI	GGCC	4 cut(s)	202, 338, 834, 917
BsiEI	CGRYCG	2 cut(s)	130, 203
BsiHKAI	GWGCWC	2 cut(s)	44, 600
BsiSI	CCGG	2 cut(s)	746, 896
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	661
BsnI	GGCC	4 cut(s)	202, 338, 834, 917
Bsp1286I	GDGCHC	4 cut(s)	44, 351, 363, 600
Bsp13I	TCCGGA	1 cut(s)	895
Bsp143I	GATC	5 cut(s)	127, 217, 643, 811, 867
Bsp1720I	GCTNAGC	1 cut(s)	43
BspANI	GGCC	4 cut(s)	202, 338, 834, 917
BspCNI	CTCAG	3 cut(s)	56, 745, 880
BspEI	TCCGGA	1 cut(s)	895
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	4 cut(s)	348, 360, 464, 750
BspMAI	CTGCAG	1 cut(s)	477
BspPI	GGATC	2 cut(s)	225, 651
BsrI	ACTGG	3 cut(s)	497, 690, 843
BssECI	CCNNGG	3 cut(s)	339, 351, 363
BssMI	GATC	5 cut(s)	127, 217, 643, 811, 867
BssNI	GRCGYC	2 cut(s)	62, 68
BssT1I	CCWWGG	3 cut(s)	339, 351, 363
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	3 cut(s)	551, 793, 927
Bst6I	CTCTTC	2 cut(s)	278, 398
BstACI	GRCGYC	2 cut(s)	62, 68
BstC8I	GCNNGC	2 cut(s)	51, 504
BstDEI	CTNAG	3 cut(s)	43, 732, 888
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	892
BstHHI	GCGC	2 cut(s)	49, 178
BstKTI	GATC	5 cut(s)	130, 220, 646, 814, 870
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	5 cut(s)	127, 217, 643, 811, 867
BstMCI	CGRYCG	2 cut(s)	130, 203
BstMWI	GCNNNNNNNGC	2 cut(s)	633, 823
BstNI	CCWGG	1 cut(s)	770
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	217, 867
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	2 cut(s)	217, 867
BstZI	CGGCCG	1 cut(s)	200
BsuRI	GGCC	4 cut(s)	202, 338, 834, 917
BtrI	CACGTC	2 cut(s)	141, 785
BtsCI	GGATG	1 cut(s)	892
BtsIMutI	CAGTG	2 cut(s)	504, 850
Cac8I	GCNNGC	2 cut(s)	51, 504
CaiI	CAGNNNCTG	2 cut(s)	472, 503
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	2 cut(s)	49, 178
Cfr13I	GGNCC	3 cut(s)	462, 832, 915
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	671, 706
CviAII	CATG	2 cut(s)	193, 459
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	43, 732, 888
DpnI	GATC	5 cut(s)	129, 219, 645, 813, 869
DpnII	GATC	5 cut(s)	127, 217, 643, 811, 867
DrdI	GACNNNNNNGTC	2 cut(s)	67, 570
DriI	GACNNNNNGTC	1 cut(s)	468
DseDI	GACNNNNNNGTC	2 cut(s)	67, 570
EaeI	YGGCCR	1 cut(s)	200
EagI	CGGCCG	1 cut(s)	200
Eam1104I	CTCTTC	2 cut(s)	278, 398
Eam1105I	GACNNNNNGTC	1 cut(s)	468
EarI	CTCTTC	2 cut(s)	278, 398
EciI	GGCGGA	4 cut(s)	224, 311, 341, 371
Ecl136II	GAGCTC	2 cut(s)	42, 598
EclXI	CGGCCG	1 cut(s)	200
Eco130I	CCWWGG	3 cut(s)	339, 351, 363
Eco24I	GRGCYC	4 cut(s)	44, 351, 363, 600
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	462
Eco52I	CGGCCG	1 cut(s)	200
Eco53kI	GAGCTC	2 cut(s)	42, 598
Eco57I	CTGAAG	2 cut(s)	575, 587
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	2 cut(s)	42, 598
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	768
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	3 cut(s)	339, 351, 363
EcoT38I	GRGCYC	4 cut(s)	44, 351, 363, 600
ErhI	CCWWGG	3 cut(s)	339, 351, 363
FaeI	CATG	2 cut(s)	196, 462
FaiI	YATR	9 cut(s)	194, 446, 460, 488, 534, 584, 631, 638, 884
FatI	CATG	2 cut(s)	192, 458
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	6 cut(s)	32, 87, 90, 200, 294, 818
FokI	GGATG	1 cut(s)	879
FriOI	GRGCYC	4 cut(s)	44, 351, 363, 600
Fsp4HI	GCNGC	6 cut(s)	32, 87, 90, 200, 294, 818
GlaI	GCGC	2 cut(s)	48, 177
GluI	GCNGC	6 cut(s)	32, 87, 90, 200, 294, 818
GsuI	CTGGAG	2 cut(s)	173, 707
HaeIII	GGCC	4 cut(s)	202, 338, 834, 917
HapII	CCGG	2 cut(s)	746, 896
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	49, 178
Hin1I	GRCGYC	2 cut(s)	62, 68
Hin1II	CATG	2 cut(s)	196, 462
Hin6I	GCGC	2 cut(s)	47, 176
HinP1I	GCGC	2 cut(s)	47, 176
HinfI	GANTC	2 cut(s)	469, 773
HpaII	CCGG	2 cut(s)	746, 896
HphI	GGTGA	2 cut(s)	253, 725
Hpy188I	TCNGA	8 cut(s)	16, 132, 555, 735, 766, 778, 789, 889
Hpy188III	TCNNGA	5 cut(s)	152, 193, 667, 871, 896
HpyAV	CCTTC	7 cut(s)	151, 244, 313, 376, 382, 562, 845
HpyCH4III	ACNGT	3 cut(s)	551, 793, 927
HpyCH4IV	ACGT	3 cut(s)	62, 140, 784
HpyCH4V	TGCA	2 cut(s)	475, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	633, 823
HpyF3I	CTNAG	3 cut(s)	43, 732, 888
HpySE526I	ACGT	3 cut(s)	62, 140, 784
Hsp92I	GRCGYC	2 cut(s)	62, 68
Hsp92II	CATG	2 cut(s)	196, 462
HspAI	GCGC	2 cut(s)	47, 176
Kpn2I	TCCGGA	1 cut(s)	895
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	5 cut(s)	127, 217, 643, 811, 867
LmnI	GCTCC	7 cut(s)	28, 101, 346, 358, 595, 633, 748
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	843, 901
MaeII	ACGT	3 cut(s)	62, 140, 784
MaeIII	GTNAC	2 cut(s)	185, 713
MalI	GATC	5 cut(s)	129, 219, 645, 813, 869
MboI	GATC	5 cut(s)	127, 217, 643, 811, 867
MflI	RGATCY	2 cut(s)	217, 867
MhlI	GDGCHC	4 cut(s)	44, 351, 363, 600
MluCI	AATT	3 cut(s)	585, 758, 878
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	2 cut(s)	144, 863
MroI	TCCGGA	1 cut(s)	895
MseI	TTAA	2 cut(s)	234, 483
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	817
MspI	CCGG	2 cut(s)	746, 896
MspR9I	CCNGG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	770
MwoI	GCNNNNNNNGC	2 cut(s)	633, 823
NdeII	GATC	5 cut(s)	127, 217, 643, 811, 867
NlaIII	CATG	2 cut(s)	196, 462
NlaIV	GGNNCC	4 cut(s)	348, 360, 464, 750
NmuCI	GTSAC	2 cut(s)	185, 713
PagI	TCATGA	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	6 cut(s)	65, 68, 71, 77, 89, 116
PfeI	GAWTC	1 cut(s)	773
PkrI	GCNGC	6 cut(s)	33, 88, 91, 201, 295, 819
Ple19I	CGATCG	1 cut(s)	130
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	584
Psp124BI	GAGCTC	2 cut(s)	44, 600
Psp6I	CCWGG	1 cut(s)	768
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	4 cut(s)	348, 360, 464, 750
PspPI	GGNCC	3 cut(s)	462, 832, 915
PstI	CTGCAG	1 cut(s)	477
PstNI	CAGNNNCTG	2 cut(s)	472, 503
PsuI	RGATCY	2 cut(s)	217, 867
PvuI	CGATCG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	2 cut(s)	44, 600
SaqAI	TTAA	2 cut(s)	234, 483
SatI	GCNGC	6 cut(s)	32, 87, 90, 200, 294, 818
Sau3AI	GATC	5 cut(s)	127, 217, 643, 811, 867
Sau96I	GGNCC	3 cut(s)	462, 832, 915
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	4 cut(s)	44, 351, 363, 600
SfaNI	GCATC	2 cut(s)	843, 901
SfcI	CTRYAG	1 cut(s)	473
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
Sse9I	AATT	3 cut(s)	585, 758, 878
SstI	GAGCTC	2 cut(s)	44, 600
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	3 cut(s)	339, 351, 363
TaaI	ACNGT	3 cut(s)	551, 793, 927
TaiI	ACGT	3 cut(s)	65, 143, 787
TaqI	TCGA	3 cut(s)	59, 126, 795
TasI	AATT	3 cut(s)	585, 758, 878
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	5 cut(s)	89, 92, 202, 296, 820
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	2 cut(s)	234, 483
Tru9I	TTAA	2 cut(s)	234, 483
TscAI	CASTG	2 cut(s)	504, 850
TseFI	GTSAC	2 cut(s)	185, 713
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	2 cut(s)	185, 713
TspDTI	ATGAA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	504, 850
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	1 cut(s)	878
ZraI	GACGTC	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.