Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

66332226 .. 66335261

Gene Structure 3036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCGATAATCTCCGATATCCAAGAGGAGCAGCAACAGAGCTCAGCGCAAGCCAAATCGGCGTCGGCGTCGGCGTCGGCGTCGGCGTCGTCGTCGTCGGGGGCGAGAGTGGGAGCGACCTCGTTTAGCACGAAGTTCGATCGGAACAACACGTCGGGGTTTCTGGAGAAGGCGTTGGAGTTTCTGGCGCAGGAGAGCGACTTCATGAGGCGGCCGACGGCGGAGAGGGATCTGGTGGCGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGATGGAGGAGGAGAGGAAGAAGAGGTGGGCGGCGGAGGAGGAGGAGAAGAAGAAGAAGGAGGCGGAGGTCAAGGCCAAGGAGGAGCCTAAGGCGGAGCCCAAGGTGGTGGAGGAGAAGAAGGAGAAGGAGGTGGAGGAGAAGAGTGGCAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAGTACTCATGGACCCAGAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTGAAGTTTGGACTGAAGGGTCAGCCTCTTATAATTGATGGGGAGCTCTATCAGTCTATCAAGCCTGATGATTGCTTATGGAGCATAGAGGATCAAACTGCTGTCTCTATTCTCCTGACCAAACACAACCAACTGGAGTGGTGGAAAGCTCTGCTGAAAGGTGACCCTGAAATAGACACTCAGAAAGTTGAACCGGAGCCAAGCAAATTGTCTGACCTGGATTCAGAAACACGTCAGACCGTCGAAAAAATGATGTTTGATCAGCGGCAGAAGCAGATGGGCCTTCCAACCAGTGAGGAGATGCAGAAGCAGGAGATCTTGAAGAAATTTATGTCTGAGCATCCGGAAATGGACTTCTCAAGGGCCAAGATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

313

Amino Acids

35.75

Weight (kDa)

6.05

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	154 - 229	2.3e-20	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AasI	GACNNNNNNGTC	1 cut(s)	582
AccIII	TCCGGA	1 cut(s)	907
AciI	CCGC	8 cut(s)	211, 221, 251, 305, 308, 338, 368, 829
AclWI	GGATC	2 cut(s)	237, 663
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	890
AcuI	CTGAAG	2 cut(s)	587, 599
AcyI	GRCGYC	5 cut(s)	62, 68, 74, 80, 86
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	440
AflIII	ACRYGT	2 cut(s)	150, 794
AgsI	TTSAA	3 cut(s)	247, 755, 886
AhdI	GACNNNNNGTC	1 cut(s)	480
AjiI	CACGTC	2 cut(s)	153, 797
AjnI	CCWGG	1 cut(s)	780
AluBI	AGCT	3 cut(s)	42, 610, 713
AluI	AGCT	3 cut(s)	42, 610, 713
Alw21I	GWGCWC	2 cut(s)	44, 612
Alw26I	GTCTC	1 cut(s)	673
AlwI	GGATC	2 cut(s)	237, 663
AlwNI	CAGNNNCTG	2 cut(s)	484, 515
Aor13HI	TCCGGA	1 cut(s)	907
AoxI	GGCC	4 cut(s)	212, 348, 844, 927
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	890
AspLEI	GCGC	2 cut(s)	49, 190
AspS9I	GGNCC	3 cut(s)	474, 844, 927
AsuHPI	GGTGA	2 cut(s)	265, 737
AvaII	GGWCC	1 cut(s)	474
AxyI	CCTNAGG	1 cut(s)	363
BanII	GRGCYC	3 cut(s)	44, 375, 612
Bbv12I	GWGCWC	2 cut(s)	44, 612
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	271, 596, 835
BceAI	ACGGC	1 cut(s)	234
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	782
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	1 cut(s)	673
BfmI	CTRYAG	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	879
BisI	GCNGC	4 cut(s)	32, 212, 306, 830
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	4 cut(s)	33, 213, 307, 831
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	1 cut(s)	474
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmgBI	CACGTC	2 cut(s)	153, 797
BmgT120I	GGNCC	3 cut(s)	474, 844, 927
BmiI	GGNNCC	4 cut(s)	360, 372, 476, 762
BmrFI	CCNGG	1 cut(s)	782
BmsI	GCATC	2 cut(s)	855, 913
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	2 cut(s)	185, 719
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	907
BsaHI	GRCGYC	5 cut(s)	62, 68, 74, 80, 86
BsaJI	CCNNGG	2 cut(s)	351, 375
BsaWI	WCCGGW	2 cut(s)	757, 907
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	3 cut(s)	509, 702, 855
Bse21I	CCTNAGG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	907
BseBI	CCWGG	1 cut(s)	782
BseDI	CCNNGG	2 cut(s)	351, 375
BseGI	GGATG	1 cut(s)	904
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	3 cut(s)	57, 758, 891
BseNI	ACTGG	3 cut(s)	509, 702, 855
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	142, 215
BshFI	GGCC	4 cut(s)	214, 350, 846, 929
BsiEI	CGRYCG	2 cut(s)	142, 215
BsiHKAI	GWGCWC	2 cut(s)	44, 612
BsiSI	CCGG	2 cut(s)	758, 908
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	673
BsnI	GGCC	4 cut(s)	214, 350, 846, 929
Bsp1286I	GDGCHC	3 cut(s)	44, 375, 612
Bsp13I	TCCGGA	1 cut(s)	907
Bsp143I	GATC	5 cut(s)	139, 229, 655, 823, 879
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	8 cut(s)	211, 221, 251, 305, 308, 338, 368, 829
BspANI	GGCC	4 cut(s)	214, 350, 846, 929
BspCNI	CTCAG	3 cut(s)	56, 757, 892
BspEI	TCCGGA	1 cut(s)	907
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	4 cut(s)	360, 372, 476, 762
BspMAI	CTGCAG	1 cut(s)	489
BspPI	GGATC	2 cut(s)	237, 663
BsrI	ACTGG	3 cut(s)	509, 702, 855
BssECI	CCNNGG	2 cut(s)	351, 375
BssMI	GATC	5 cut(s)	139, 229, 655, 823, 879
BssNI	GRCGYC	5 cut(s)	62, 68, 74, 80, 86
BssT1I	CCWWGG	2 cut(s)	351, 375
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	3 cut(s)	563, 805, 939
Bst6I	CTCTTC	2 cut(s)	290, 410
BstACI	GRCGYC	5 cut(s)	62, 68, 74, 80, 86
BstC8I	GCNNGC	2 cut(s)	51, 516
BstDEI	CTNAG	4 cut(s)	43, 363, 744, 900
BstEII	GGTNACC	1 cut(s)	725
BstF5I	GGATG	1 cut(s)	904
BstHHI	GCGC	2 cut(s)	49, 190
BstKTI	GATC	5 cut(s)	142, 232, 658, 826, 882
BstMAI	GTCTC	1 cut(s)	673
BstMBI	GATC	5 cut(s)	139, 229, 655, 823, 879
BstMCI	CGRYCG	2 cut(s)	142, 215
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 645, 835
BstNI	CCWGG	1 cut(s)	782
BstPI	GGTNACC	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	780
BstSFI	CTRYAG	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	229, 879
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	2 cut(s)	229, 879
BstZI	CGGCCG	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	4 cut(s)	214, 350, 846, 929
BtrI	CACGTC	2 cut(s)	153, 797
BtsCI	GGATG	1 cut(s)	904
BtsIMutI	CAGTG	2 cut(s)	516, 862
Cac8I	GCNNGC	2 cut(s)	51, 516
CaiI	CAGNNNCTG	2 cut(s)	484, 515
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	2 cut(s)	49, 190
Cfr13I	GGNCC	3 cut(s)	474, 844, 927
CseI	GACGC	5 cut(s)	51, 57, 63, 69, 75
Csp6I	GTAC	1 cut(s)	466
CspCI	CAANNNNNGTGG	2 cut(s)	683, 718
CviAII	CATG	2 cut(s)	205, 471
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	4 cut(s)	43, 363, 744, 900
DpnI	GATC	5 cut(s)	141, 231, 657, 825, 881
DpnII	GATC	5 cut(s)	139, 229, 655, 823, 879
DrdI	GACNNNNNNGTC	1 cut(s)	582
DriI	GACNNNNNGTC	1 cut(s)	480
DseDI	GACNNNNNNGTC	1 cut(s)	582
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	290, 410
Eam1105I	GACNNNNNGTC	1 cut(s)	480
EarI	CTCTTC	2 cut(s)	290, 410
EciI	GGCGGA	4 cut(s)	236, 323, 353, 383
Ecl136II	GAGCTC	2 cut(s)	42, 610
EclXI	CGGCCG	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	351, 375
Eco24I	GRGCYC	3 cut(s)	44, 375, 612
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	212
Eco53kI	GAGCTC	2 cut(s)	42, 610
Eco57I	CTGAAG	2 cut(s)	587, 599
Eco81I	CCTNAGG	1 cut(s)	363
Eco91I	GGTNACC	1 cut(s)	725
EcoICRI	GAGCTC	2 cut(s)	42, 610
EcoO65I	GGTNACC	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	780
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	351, 375
EcoT38I	GRGCYC	3 cut(s)	44, 375, 612
ErhI	CCWWGG	2 cut(s)	351, 375
FaeI	CATG	2 cut(s)	208, 474
FaiI	YATR	9 cut(s)	206, 458, 472, 500, 546, 596, 643, 650, 896
FatI	CATG	2 cut(s)	204, 470
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	4 cut(s)	32, 212, 306, 830
FokI	GGATG	1 cut(s)	891
FriOI	GRGCYC	3 cut(s)	44, 375, 612
Fsp4HI	GCNGC	4 cut(s)	32, 212, 306, 830
GlaI	GCGC	2 cut(s)	48, 189
GluI	GCNGC	4 cut(s)	32, 212, 306, 830
GsuI	CTGGAG	2 cut(s)	185, 719
HaeIII	GGCC	4 cut(s)	214, 350, 846, 929
HapII	CCGG	2 cut(s)	758, 908
HgaI	GACGC	5 cut(s)	51, 57, 63, 69, 75
HhaI	GCGC	2 cut(s)	49, 190
Hin1I	GRCGYC	5 cut(s)	62, 68, 74, 80, 86
Hin1II	CATG	2 cut(s)	208, 474
Hin6I	GCGC	2 cut(s)	47, 188
HinP1I	GCGC	2 cut(s)	47, 188
HinfI	GANTC	2 cut(s)	481, 785
HpaII	CCGG	2 cut(s)	758, 908
HphI	GGTGA	2 cut(s)	265, 737
Hpy188I	TCNGA	8 cut(s)	16, 144, 567, 747, 778, 790, 801, 901
Hpy188III	TCNNGA	5 cut(s)	164, 205, 679, 883, 908
HpyAV	CCTTC	7 cut(s)	163, 256, 325, 388, 394, 574, 857
HpyCH4III	ACNGT	3 cut(s)	563, 805, 939
HpyCH4IV	ACGT	2 cut(s)	152, 796
HpyCH4V	TGCA	2 cut(s)	487, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 645, 835
HpyF3I	CTNAG	4 cut(s)	43, 363, 744, 900
HpySE526I	ACGT	2 cut(s)	152, 796
Hsp92I	GRCGYC	5 cut(s)	62, 68, 74, 80, 86
Hsp92II	CATG	2 cut(s)	208, 474
HspAI	GCGC	2 cut(s)	47, 188
Kpn2I	TCCGGA	1 cut(s)	907
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	139, 229, 655, 823, 879
LmnI	GCTCC	7 cut(s)	28, 113, 358, 370, 607, 645, 760
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	855, 913
MaeII	ACGT	2 cut(s)	152, 796
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	5 cut(s)	141, 231, 657, 825, 881
MboI	GATC	5 cut(s)	139, 229, 655, 823, 879
MflI	RGATCY	2 cut(s)	229, 879
MhlI	GDGCHC	3 cut(s)	44, 375, 612
MluCI	AATT	3 cut(s)	597, 770, 890
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	2 cut(s)	156, 875
MroI	TCCGGA	1 cut(s)	907
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	829
MspI	CCGG	2 cut(s)	758, 908
MspR9I	CCNGG	1 cut(s)	782
MvaI	CCWGG	1 cut(s)	782
MwoI	GCNNNNNNNGC	3 cut(s)	59, 645, 835
NdeII	GATC	5 cut(s)	139, 229, 655, 823, 879
NlaIII	CATG	2 cut(s)	208, 474
NlaIV	GGNNCC	4 cut(s)	360, 372, 476, 762
NmuCI	GTSAC	1 cut(s)	725
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	7 cut(s)	65, 71, 77, 83, 89, 101, 128
PfeI	GAWTC	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	33, 213, 307, 831
Ple19I	CGATCG	1 cut(s)	142
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PsiI	TTATAA	1 cut(s)	596
Psp124BI	GAGCTC	2 cut(s)	44, 612
Psp6I	CCWGG	1 cut(s)	780
PspEI	GGTNACC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	780
PspN4I	GGNNCC	4 cut(s)	360, 372, 476, 762
PspPI	GGNCC	3 cut(s)	474, 844, 927
PstI	CTGCAG	1 cut(s)	489
PstNI	CAGNNNCTG	2 cut(s)	484, 515
PsuI	RGATCY	2 cut(s)	229, 879
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	509
SacI	GAGCTC	2 cut(s)	44, 612
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	4 cut(s)	32, 212, 306, 830
Sau3AI	GATC	5 cut(s)	139, 229, 655, 823, 879
Sau96I	GGNCC	3 cut(s)	474, 844, 927
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	782
SduI	GDGCHC	3 cut(s)	44, 375, 612
SfaNI	GCATC	2 cut(s)	855, 913
SfcI	CTRYAG	1 cut(s)	485
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	922
SmoI	CTYRAG	1 cut(s)	922
Sse9I	AATT	3 cut(s)	597, 770, 890
SsiI	CCGC	8 cut(s)	211, 221, 251, 305, 308, 338, 368, 829
SstI	GAGCTC	2 cut(s)	44, 612
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	2 cut(s)	351, 375
TaaI	ACNGT	3 cut(s)	563, 805, 939
TaiI	ACGT	2 cut(s)	155, 799
TaqI	TCGA	2 cut(s)	138, 807
TasI	AATT	3 cut(s)	597, 770, 890
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	3 cut(s)	214, 308, 832
TfiI	GAWTC	1 cut(s)	785
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	516, 862
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	1 cut(s)	193
TspRI	CASTG	2 cut(s)	516, 862
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	890
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.