Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

20467911 .. 20468348

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0214200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATGGTATCATCGACACTGTTTCTGCTTCTCACTCTCTCCTCCCATTGATTGGCTTGCTGAAAACTAGTGGAAAACTAGTTTTGGTGGGTGCTCCAGTGGAGCCACCTGAGCTTCCCGTCTTCCCTTTAATTATGGGGAGGAAAGTTATTGCTGGTAGTGCAATTGGGGGAATGAAAGAGACTCAAGAGATGATAGATTTTGCAGCAAAGCACAACATCACAGCGGATGTCGAAGTTATTACAATGGATTATGTGAACACTGCTCTTGAACGACTTGAGAAGGGCGACAATGTTAAATATCGCTTTGTCATCGATGTTGCCAACATGATAAAATGTGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

5.27

Isoelectric Point (pI)

20.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	2 - 70	5.5e-09	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AciI	CCGC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	272
AhlI	ACTAGT	2 cut(s)	68, 79
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	176
BcuI	ACTAGT	2 cut(s)	68, 79
BfaI	CTAG	3 cut(s)	69, 80, 346
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	171, 299
Bsa29I	ATCGAT	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	315
BseGI	GGATG	2 cut(s)	10, 235
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	10, 235
BstMAI	GTCTC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 161
BstV1I	GCAGC	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	10, 235
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	3 cut(s)	18, 105, 261
Cac8I	GCNNGC	1 cut(s)	59
ClaI	ATCGAT	1 cut(s)	315
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	3 cut(s)	57, 106, 115
CviKI_1	RGCY	3 cut(s)	57, 106, 115
DdeI	CTNAG	1 cut(s)	111
FaeI	CATG	1 cut(s)	331
FaiI	YATR	3 cut(s)	137, 255, 329
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	17, 242
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	3 cut(s)	69, 80, 346
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	81
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	188, 269
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	164, 206, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 161
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	100, 103
LpnPI	CCDG	3 cut(s)	111, 123, 141
Lsp1109I	GCAGC	1 cut(s)	218
MaeI	CTAG	3 cut(s)	69, 80, 346
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	2 cut(s)	132, 165
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	53, 135
MseI	TTAA	2 cut(s)	131, 297
MspA1I	CMGCKG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	112, 161
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	131, 297
SatI	GCNGC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	2 cut(s)	112, 117
SmlI	CTYRAG	2 cut(s)	186, 278
SmoI	CTYRAG	2 cut(s)	186, 278
SpeI	ACTAGT	2 cut(s)	68, 79
Sse9I	AATT	2 cut(s)	132, 165
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	3 cut(s)	69, 80, 346
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	3 cut(s)	15, 234, 315
TasI	AATT	2 cut(s)	132, 165
Tru1I	TTAA	2 cut(s)	131, 297
Tru9I	TTAA	2 cut(s)	131, 297
TscAI	CASTG	3 cut(s)	25, 105, 268
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	3 cut(s)	25, 105, 268
Van91I	CCANNNNNTGG	1 cut(s)	53
XspI	CTAG	3 cut(s)	69, 80, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.