Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004622.1

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Reverse (-)

7712 .. 10080

Gene Structure 2369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004622.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgattgatatgggcttgttctatccctacaaagagatgatggattcggacccatcacacaccaggaacgccgccaacactggcctatgtccactatcccatcccaaaatgacatgtgttttggaaggttttgctgatgttgggtgtctctctgacccacacaaagctggtgaatttgaggtcactcgactcaagctttgggatgaaggtaaggggctgaaggcagcatatgattctataggatgggatcatcccaaccggtcggaggggtggaactatttggtgaaaggtgatccagagacagacactcaaaaggttgaaccggatcccagcaaaccaccagacctggattcagagacacgccggactgttaaaaagatgatatttgaccagatcgagacagaagcagatggagtgtcccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

141

Amino Acids

15.81

Weight (kDa)

4.75

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	4 cut(s)	255, 287, 320, 333
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	62, 345
AluBI	AGCT	2 cut(s)	167, 196
AluI	AGCT	2 cut(s)	167, 196
Alw26I	GTCTC	4 cut(s)	152, 293, 350, 392
AlwI	GGATC	4 cut(s)	255, 287, 320, 333
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	173
ArsI	GACNNNNNNTTYG	4 cut(s)	103, 135, 180, 212
AsiGI	ACCGGT	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	182, 295, 302
AvaII	GGWCC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	5 cut(s)	34, 61, 108, 237, 404
BciT130I	CCWGG	2 cut(s)	64, 347
BcoDI	GTCTC	4 cut(s)	152, 293, 350, 392
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	2 cut(s)	72, 225
BlsI	GCNGC	2 cut(s)	73, 226
Bme1390I	CCNGG	2 cut(s)	64, 347
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	51, 327
BmrFI	CCNGG	2 cut(s)	64, 347
BmrI	ACTGGG	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	176
BsaWI	WCCGGW	2 cut(s)	258, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	1 cut(s)	258
Bse1I	ACTGG	2 cut(s)	85, 421
BseBI	CCWGG	2 cut(s)	64, 347
BseGI	GGATG	4 cut(s)	100, 208, 248, 250
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	2 cut(s)	85, 421
BseXI	GCAGC	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	84
BshTI	ACCGGT	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	263
BsiSI	CCGG	3 cut(s)	259, 323, 364
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	4 cut(s)	152, 293, 350, 392
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	247, 292, 325, 393
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	51, 327
BspPI	GGATC	4 cut(s)	255, 287, 320, 333
BsrFI	RCCGGY	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	85, 421
BssAI	RCCGGY	1 cut(s)	258
BssMI	GATC	4 cut(s)	247, 292, 325, 393
Bst2UI	CCWGG	2 cut(s)	64, 347
Bst4CI	ACNGT	1 cut(s)	370
BstF5I	GGATG	4 cut(s)	100, 208, 248, 250
BstKTI	GATC	4 cut(s)	250, 295, 328, 396
BstMAI	GTCTC	4 cut(s)	152, 293, 350, 392
BstMBI	GATC	4 cut(s)	247, 292, 325, 393
BstMCI	CGRYCG	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	64, 347
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	62, 345
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	4 cut(s)	100, 208, 248, 250
BtsIMutI	CAGTG	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	49
CspAI	ACCGGT	1 cut(s)	258
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	5 cut(s)	15, 84, 167, 196, 217
CviKI_1	RGCY	5 cut(s)	15, 84, 167, 196, 217
DpnI	GATC	4 cut(s)	249, 294, 327, 395
DpnII	GATC	4 cut(s)	247, 292, 325, 393
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	62, 345
FaeI	CATG	1 cut(s)	117
FaiI	YATR	6 cut(s)	11, 88, 115, 229, 231, 239
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	72, 225
FokI	GGATG	4 cut(s)	87, 215, 237, 255
Fsp4HI	GCNGC	2 cut(s)	72, 225
GluI	GCNGC	2 cut(s)	72, 225
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	3 cut(s)	259, 323, 364
Hin1II	CATG	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	44, 189, 233, 350
HpaII	CCGG	3 cut(s)	259, 323, 364
HphI	GGTGA	3 cut(s)	182, 295, 302
Hpy166II	GTNNAC	1 cut(s)	92
Hpy188I	TCNGA	4 cut(s)	49, 154, 265, 355
Hpy188III	TCNNGA	2 cut(s)	296, 397
Hpy8I	GTNNAC	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	119, 200, 214
HpyCH4III	ACNGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	247, 292, 325, 393
Lsp1109I	GCAGC	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	249, 294, 327, 395
MboI	GATC	4 cut(s)	247, 292, 325, 393
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	2 cut(s)	172, 259
MseI	TTAA	1 cut(s)	372
MspI	CCGG	3 cut(s)	259, 323, 364
MspR9I	CCNGG	2 cut(s)	64, 347
MvaI	CCWGG	2 cut(s)	64, 347
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	247, 292, 325, 393
NlaIII	CATG	1 cut(s)	117
NlaIV	GGNNCC	2 cut(s)	51, 327
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	117
PciI	ACATGT	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	44, 233, 350
PinAI	ACCGGT	1 cut(s)	258
PkrI	GCNGC	2 cut(s)	73, 226
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	62, 345
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	62, 345
PspN4I	GGNNCC	2 cut(s)	51, 327
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	72, 225
Sau3AI	GATC	4 cut(s)	247, 292, 325, 393
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	2 cut(s)	64, 347
SetI	ASST	8 cut(s)	130, 169, 183, 198, 211, 292, 318, 348
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	62, 345
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	2 cut(s)	187, 396
TasI	AATT	1 cut(s)	173
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	44, 233, 350
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.