Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

32039093 .. 32039717

Gene Structure 625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGATAATCTCAGATATCCAAGACGAAAAAAACAAAAAACCAAACCAAGCTACGGTATCGGAGGAGGACAAAGGGAAAGTTCCAAACAAAGGGAATGGGATTGATTTGGAGAAATACTCATGGACGCAGAGCCTGCAGGAGGTTAACGTACTGATTCCAGTGACTGCTGGAACTAAGAAAAGGGATATTGTACACGAGGTAAAGACAAACCATCTCAAATTAATTTGGACTCAAAGGCAGCCTCCTATAATTGATGGGGACCTCTTTCAGTCCATCAAGCCTGATGATTGTCTGTGGAGCATAGAGGATCAGACTGCTGTCTCCATTCTTTTGACCAAGAAGAATCAACAGAACTGGTGGAAATCTTTGGTGAAAGACACTCACAAGGTTGAACCTGAACCCAGCAAACTATCCGACCTTGACTCCAAAACGCGCCAGACTGTGGAGAAGATGATGTTTGATCAAAGACAGAAGCAGTGGGGACTTCCAACTAGTGATGAGAATCATGAGATGCAGAAGCAGGAGCTATTGAAGAAGTTCATGGCTCAGCACCCGAACATGGACTTTTTAAATGCAGTAATAAAGATGGCAATTGGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

201

Amino Acids

23.23

Weight (kDa)

6.97

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	38 - 114	3.9e-18	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccII	CGCG	1 cut(s)	436
AclWI	GGATC	1 cut(s)	318
AfaI	GTAC	2 cut(s)	153, 195
AfiI	CCNNNNNNNGG	5 cut(s)	55, 92, 142, 445, 562
AgsI	TTSAA	2 cut(s)	395, 535
AhlI	ACTAGT	1 cut(s)	494
AluBI	AGCT	2 cut(s)	53, 529
AluI	AGCT	2 cut(s)	53, 529
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	1 cut(s)	318
AlwNI	CAGNNNCTG	2 cut(s)	136, 167
ApeKI	GCWGC	1 cut(s)	241
AseI	ATTAAT	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	539
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	222, 251, 284, 583
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	328
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	242
BlpI	GCTNAGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	504
BoxI	GACNNNNGTC	1 cut(s)	320
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
Bpu1102I	GCTNAGC	1 cut(s)	549
BsaBI	GATNNNNATC	1 cut(s)	504
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 92, 142, 445, 562
Bse1I	ACTGG	2 cut(s)	161, 362
Bse8I	GATNNNNATC	1 cut(s)	504
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	5 cut(s)	55, 92, 142, 445, 562
BseMII	CTCAG	2 cut(s)	27, 563
BseNI	ACTGG	2 cut(s)	161, 362
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	275, 498
BslI	CCNNNNNNNGG	5 cut(s)	55, 92, 142, 445, 562
BsmAI	GTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	275, 498
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	310, 463
Bsp1720I	GCTNAGC	1 cut(s)	549
BspCNI	CTCAG	2 cut(s)	26, 562
BspFNI	CGCG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	263
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	161, 362
BssMI	GATC	2 cut(s)	310, 463
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	58, 445
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	13, 177, 549
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	2 cut(s)	313, 466
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	2 cut(s)	310, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstPAI	GACNNNNGTC	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	168, 485
Cac8I	GCNNGC	1 cut(s)	137
CaiI	CAGNNNCTG	2 cut(s)	136, 167
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	262
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	152, 194
CviAII	CATG	4 cut(s)	123, 509, 544, 562
CviJI	RGCY	6 cut(s)	53, 135, 244, 283, 529, 548
CviKI_1	RGCY	6 cut(s)	53, 135, 244, 283, 529, 548
CviQI	GTAC	2 cut(s)	152, 194
DdeI	CTNAG	3 cut(s)	13, 177, 549
DpnI	GATC	2 cut(s)	312, 465
DpnII	GATC	2 cut(s)	310, 463
DraI	TTTAAA	1 cut(s)	573
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	4 cut(s)	126, 512, 547, 565
FaiI	YATR	6 cut(s)	124, 251, 305, 510, 545, 563
FaqI	GGGAC	2 cut(s)	275, 498
FatI	CATG	4 cut(s)	122, 508, 543, 561
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	1 cut(s)	242
GsaI	CCCAGC	1 cut(s)	408
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	126, 512, 547, 565
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	5 cut(s)	157, 232, 346, 425, 505
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	148, 196
Hpy188I	TCNGA	4 cut(s)	16, 64, 315, 418
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	2 cut(s)	148, 196
HpyCH4III	ACNGT	2 cut(s)	58, 445
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	139, 517, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	3 cut(s)	13, 177, 549
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	126, 512, 547, 565
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	310, 463
LmnI	GCTCC	2 cut(s)	300, 526
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	312, 465
MboI	GATC	2 cut(s)	310, 463
MboII	GAAGA	3 cut(s)	355, 463, 547
MfeI	CAATTG	1 cut(s)	594
MluCI	AATT	4 cut(s)	221, 225, 252, 594
MlyI	GAGTC	2 cut(s)	226, 419
MmeI	TCCRAC	2 cut(s)	441, 515
MnlI	CCTC	7 cut(s)	58, 61, 136, 193, 255, 275, 301
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	4 cut(s)	147, 224, 572, 604
MunI	CAATTG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	310, 463
NlaIII	CATG	4 cut(s)	126, 512, 547, 565
NlaIV	GGNNCC	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	3 cut(s)	157, 346, 505
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	2 cut(s)	226, 419
PpsI	GAGTC	2 cut(s)	226, 419
PpuMI	RGGWCCY	1 cut(s)	262
PshAI	GACNNNNGTC	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	2 cut(s)	136, 167
RsaI	GTAC	2 cut(s)	153, 195
RsaNI	GTAC	2 cut(s)	152, 194
SaqAI	TTAA	4 cut(s)	147, 224, 572, 604
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	310, 463
Sau96I	GGNCC	1 cut(s)	262
SbfI	CCTGCAGG	1 cut(s)	141
SchI	GAGTC	2 cut(s)	226, 419
SdaI	CCTGCAGG	1 cut(s)	141
SetI	ASST	9 cut(s)	55, 147, 153, 204, 267, 393, 400, 423, 531
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	262
SpeI	ACTAGT	1 cut(s)	494
Sse8387I	CCTGCAGG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	221, 225, 252, 594
SspMI	CTAG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	58, 445
TaiI	ACGT	1 cut(s)	153
TasI	AATT	4 cut(s)	221, 225, 252, 594
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	3 cut(s)	157, 346, 505
Tru1I	TTAA	4 cut(s)	147, 224, 572, 604
Tru9I	TTAA	4 cut(s)	147, 224, 572, 604
TscAI	CASTG	2 cut(s)	168, 485
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	532
TspRI	CASTG	2 cut(s)	168, 485
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	262
VspI	ATTAAT	1 cut(s)	224
XagI	CCTNNNNNAGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.