Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Reverse (-)

1763077 .. 1765460

Gene Structure 2384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGATAATCTCCGATATCCAAGAGGAGCAGCAACAGAGCTCAGCGCAAGCCAAATCGGCGTCGGCGTCGGCGTCGGCTTCGGCGTCGTCGGGGGCGAGAGTGGGAGCGACCTCGTTTAGCACGAAGTTCGATCGGAACAACACGTCGGGGTTTCTGGAGAAGGCGCTGGAGTTTCTGGCGCAGGAGAGCGACTTCATGAGGCGGCCGACGGCGGAGAGGGATCTGGTGGCGATATTCAAGGCGGTGAGGGAGAAGGAGAGGAAGAAGATGGAGGAGGAGAGGAAGAAGAGGTGGGCGGCGGAGGAGGAGAAGAAGAAGGAGGAGGCGGAGGTCAAGGCCAAGGAGGAGCCCAAGGCGGAGCCCAAGGTGGTGGAGGAGAAGAAGGAGAAGGAGGTGGAGGAGAAGAGTGGCAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATATGGAGAAGTACTCATGGACCCAGAGTCTGCAGGAGGTTAATATAATCATTCCAGTGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTGAAGTTTGGACTGAAGGGTCAGCCTCCTATAATTGATGGGGAGCTCTATCAGTCTATCAAGCCTGATGATTGCTTATGGAGCATAGAGGATCAAACTGCTGTCTCTATTCTCCTGACCAAACACAACCAACTGGAGTGGTGGAAAGCTCTGCTGAAAGGTGACCCTGAAATAGACACTCAGAAAGTTGAACCGGAGCCAAGCAAATTGTCTGACCTGGATTCAGAAACACGTCAGACTGTCGAAAAAATGATGTTTGATCAGCGGCAGAAGCAGATGGGCCTTCCAACCAGTGAGGAGATGCAGAAGCAGGAGATCTTGAAGAAGTTTATGTCTGAGCATCCGGAAATGGACTTCTCAAGGGCCAAGATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

311

Amino Acids

35.43

Weight (kDa)

5.84

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	151 - 226	2.1e-20	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	898
AciI	CCGC	8 cut(s)	205, 215, 245, 299, 302, 329, 359, 820
AclWI	GGATC	2 cut(s)	231, 654
AcoI	YGGCCR	1 cut(s)	206
AcuI	CTGAAG	2 cut(s)	578, 590
AcyI	GRCGYC	4 cut(s)	62, 68, 74, 86
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	2 cut(s)	144, 785
AgsI	TTSAA	3 cut(s)	241, 746, 877
AhdI	GACNNNNNGTC	1 cut(s)	471
AjiI	CACGTC	2 cut(s)	147, 788
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	3 cut(s)	42, 601, 704
AluI	AGCT	3 cut(s)	42, 601, 704
Alw21I	GWGCWC	2 cut(s)	44, 603
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	2 cut(s)	231, 654
AlwNI	CAGNNNCTG	2 cut(s)	475, 506
Aor13HI	TCCGGA	1 cut(s)	898
AoxI	GGCC	4 cut(s)	206, 339, 835, 918
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	3 cut(s)	49, 169, 184
AspS9I	GGNCC	3 cut(s)	465, 835, 918
AsuHPI	GGTGA	2 cut(s)	259, 728
AvaII	GGWCC	1 cut(s)	465
BanII	GRGCYC	4 cut(s)	44, 354, 366, 603
Bbv12I	GWGCWC	2 cut(s)	44, 603
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	265, 587, 826
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	773
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	664
BfmI	CTRYAG	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	4 cut(s)	32, 206, 300, 821
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	4 cut(s)	33, 207, 301, 822
BmcAI	AGTACT	1 cut(s)	458
Bme1390I	CCNGG	1 cut(s)	773
Bme18I	GGWCC	1 cut(s)	465
BmeRI	GACNNNNNGTC	1 cut(s)	471
BmgBI	CACGTC	2 cut(s)	147, 788
BmgT120I	GGNCC	3 cut(s)	465, 835, 918
BmiI	GGNNCC	4 cut(s)	351, 363, 467, 753
BmrFI	CCNGG	1 cut(s)	773
BmsI	GCATC	2 cut(s)	846, 904
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
BpmI	CTGGAG	3 cut(s)	179, 191, 710
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	898
BsaHI	GRCGYC	4 cut(s)	62, 68, 74, 86
BsaJI	CCNNGG	3 cut(s)	342, 354, 366
BsaWI	WCCGGW	2 cut(s)	748, 898
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	3 cut(s)	500, 693, 846
BseAI	TCCGGA	1 cut(s)	898
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	3 cut(s)	342, 354, 366
BseGI	GGATG	1 cut(s)	895
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	3 cut(s)	57, 749, 882
BseNI	ACTGG	3 cut(s)	500, 693, 846
BseX3I	CGGCCG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	136, 209
BshFI	GGCC	4 cut(s)	208, 341, 837, 920
BsiEI	CGRYCG	2 cut(s)	136, 209
BsiHKAI	GWGCWC	2 cut(s)	44, 603
BsiSI	CCGG	2 cut(s)	749, 899
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	664
BsnI	GGCC	4 cut(s)	208, 341, 837, 920
Bsp1286I	GDGCHC	4 cut(s)	44, 354, 366, 603
Bsp13I	TCCGGA	1 cut(s)	898
Bsp143I	GATC	5 cut(s)	133, 223, 646, 814, 870
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	8 cut(s)	205, 215, 245, 299, 302, 329, 359, 820
BspANI	GGCC	4 cut(s)	208, 341, 837, 920
BspCNI	CTCAG	3 cut(s)	56, 748, 883
BspEI	TCCGGA	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	4 cut(s)	351, 363, 467, 753
BspMAI	CTGCAG	1 cut(s)	480
BspPI	GGATC	2 cut(s)	231, 654
BsrI	ACTGG	3 cut(s)	500, 693, 846
BssECI	CCNNGG	3 cut(s)	342, 354, 366
BssMI	GATC	5 cut(s)	133, 223, 646, 814, 870
BssNI	GRCGYC	4 cut(s)	62, 68, 74, 86
BssT1I	CCWWGG	3 cut(s)	342, 354, 366
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	3 cut(s)	554, 796, 930
Bst6I	CTCTTC	2 cut(s)	284, 401
BstACI	GRCGYC	4 cut(s)	62, 68, 74, 86
BstC8I	GCNNGC	2 cut(s)	51, 507
BstDEI	CTNAG	3 cut(s)	43, 735, 891
BstEII	GGTNACC	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	895
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	3 cut(s)	49, 169, 184
BstKTI	GATC	5 cut(s)	136, 226, 649, 817, 873
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	5 cut(s)	133, 223, 646, 814, 870
BstMCI	CGRYCG	2 cut(s)	136, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 636, 826
BstNI	CCWGG	1 cut(s)	773
BstPI	GGTNACC	1 cut(s)	716
BstSCI	CCNGG	1 cut(s)	771
BstSFI	CTRYAG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	223, 870
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	2 cut(s)	223, 870
BstZI	CGGCCG	1 cut(s)	206
BsuRI	GGCC	4 cut(s)	208, 341, 837, 920
BtrI	CACGTC	2 cut(s)	147, 788
BtsCI	GGATG	1 cut(s)	895
BtsIMutI	CAGTG	2 cut(s)	507, 853
Cac8I	GCNNGC	2 cut(s)	51, 507
CaiI	CAGNNNCTG	2 cut(s)	475, 506
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	3 cut(s)	49, 169, 184
Cfr13I	GGNCC	3 cut(s)	465, 835, 918
CseI	GACGC	4 cut(s)	51, 57, 63, 75
Csp6I	GTAC	1 cut(s)	457
CspCI	CAANNNNNGTGG	2 cut(s)	674, 709
CviAII	CATG	2 cut(s)	199, 462
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	3 cut(s)	43, 735, 891
DpnI	GATC	5 cut(s)	135, 225, 648, 816, 872
DpnII	GATC	5 cut(s)	133, 223, 646, 814, 870
DrdI	GACNNNNNNGTC	1 cut(s)	573
DriI	GACNNNNNGTC	1 cut(s)	471
DseDI	GACNNNNNNGTC	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	206
EagI	CGGCCG	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	284, 401
Eam1105I	GACNNNNNGTC	1 cut(s)	471
EarI	CTCTTC	2 cut(s)	284, 401
EciI	GGCGGA	4 cut(s)	230, 317, 344, 374
Ecl136II	GAGCTC	2 cut(s)	42, 601
EclXI	CGGCCG	1 cut(s)	206
Eco130I	CCWWGG	3 cut(s)	342, 354, 366
Eco24I	GRGCYC	4 cut(s)	44, 354, 366, 603
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	465
Eco52I	CGGCCG	1 cut(s)	206
Eco53kI	GAGCTC	2 cut(s)	42, 601
Eco57I	CTGAAG	2 cut(s)	578, 590
Eco91I	GGTNACC	1 cut(s)	716
EcoICRI	GAGCTC	2 cut(s)	42, 601
EcoO65I	GGTNACC	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	771
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	3 cut(s)	342, 354, 366
EcoT38I	GRGCYC	4 cut(s)	44, 354, 366, 603
ErhI	CCWWGG	3 cut(s)	342, 354, 366
FaeI	CATG	2 cut(s)	202, 465
FaiI	YATR	9 cut(s)	200, 449, 463, 491, 537, 587, 634, 641, 887
FatI	CATG	2 cut(s)	198, 461
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	4 cut(s)	32, 206, 300, 821
FokI	GGATG	1 cut(s)	882
FriOI	GRGCYC	4 cut(s)	44, 354, 366, 603
Fsp4HI	GCNGC	4 cut(s)	32, 206, 300, 821
GlaI	GCGC	3 cut(s)	48, 168, 183
GluI	GCNGC	4 cut(s)	32, 206, 300, 821
GsuI	CTGGAG	3 cut(s)	179, 191, 710
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	208, 341, 837, 920
HapII	CCGG	2 cut(s)	749, 899
HgaI	GACGC	4 cut(s)	51, 57, 63, 75
HhaI	GCGC	3 cut(s)	49, 169, 184
Hin1I	GRCGYC	4 cut(s)	62, 68, 74, 86
Hin1II	CATG	2 cut(s)	202, 465
Hin6I	GCGC	3 cut(s)	47, 167, 182
HinP1I	GCGC	3 cut(s)	47, 167, 182
HinfI	GANTC	2 cut(s)	472, 776
HpaII	CCGG	2 cut(s)	749, 899
HphI	GGTGA	2 cut(s)	259, 728
Hpy188I	TCNGA	8 cut(s)	16, 138, 558, 738, 769, 781, 792, 892
Hpy188III	TCNNGA	5 cut(s)	158, 199, 670, 874, 899
Hpy99I	CGWCG	7 cut(s)	67, 73, 79, 91, 94, 151, 214
HpyAV	CCTTC	7 cut(s)	157, 250, 313, 379, 385, 565, 848
HpyCH4III	ACNGT	3 cut(s)	554, 796, 930
HpyCH4IV	ACGT	2 cut(s)	146, 787
HpyCH4V	TGCA	2 cut(s)	478, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 636, 826
HpyF3I	CTNAG	3 cut(s)	43, 735, 891
HpySE526I	ACGT	2 cut(s)	146, 787
Hsp92I	GRCGYC	4 cut(s)	62, 68, 74, 86
Hsp92II	CATG	2 cut(s)	202, 465
HspAI	GCGC	3 cut(s)	47, 167, 182
Kpn2I	TCCGGA	1 cut(s)	898
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	133, 223, 646, 814, 870
LmnI	GCTCC	7 cut(s)	28, 107, 349, 361, 598, 636, 751
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	846, 904
MaeII	ACGT	2 cut(s)	146, 787
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	5 cut(s)	135, 225, 648, 816, 872
MboI	GATC	5 cut(s)	133, 223, 646, 814, 870
MflI	RGATCY	2 cut(s)	223, 870
MhlI	GDGCHC	4 cut(s)	44, 354, 366, 603
MluCI	AATT	2 cut(s)	588, 761
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	866
MroI	TCCGGA	1 cut(s)	898
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	2 cut(s)	749, 899
MspR9I	CCNGG	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	3 cut(s)	59, 636, 826
NdeII	GATC	5 cut(s)	133, 223, 646, 814, 870
NlaIII	CATG	2 cut(s)	202, 465
NlaIV	GGNNCC	4 cut(s)	351, 363, 467, 753
NmuCI	GTSAC	1 cut(s)	716
PagI	TCATGA	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	5 cut(s)	65, 71, 83, 95, 122
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	33, 207, 301, 822
Ple19I	CGATCG	1 cut(s)	136
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp124BI	GAGCTC	2 cut(s)	44, 603
Psp6I	CCWGG	1 cut(s)	771
PspEI	GGTNACC	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	4 cut(s)	351, 363, 467, 753
PspPI	GGNCC	3 cut(s)	465, 835, 918
PstI	CTGCAG	1 cut(s)	480
PstNI	CAGNNNCTG	2 cut(s)	475, 506
PsuI	RGATCY	2 cut(s)	223, 870
PvuI	CGATCG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	2 cut(s)	44, 603
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	4 cut(s)	32, 206, 300, 821
Sau3AI	GATC	5 cut(s)	133, 223, 646, 814, 870
Sau96I	GGNCC	3 cut(s)	465, 835, 918
ScaI	AGTACT	1 cut(s)	458
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	4 cut(s)	44, 354, 366, 603
SfaNI	GCATC	2 cut(s)	846, 904
SfcI	CTRYAG	1 cut(s)	476
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	913
SmoI	CTYRAG	1 cut(s)	913
Sse9I	AATT	2 cut(s)	588, 761
SsiI	CCGC	8 cut(s)	205, 215, 245, 299, 302, 329, 359, 820
SstI	GAGCTC	2 cut(s)	44, 603
StyD4I	CCNGG	1 cut(s)	771
StyI	CCWWGG	3 cut(s)	342, 354, 366
TaaI	ACNGT	3 cut(s)	554, 796, 930
TaiI	ACGT	2 cut(s)	149, 790
TaqI	TCGA	2 cut(s)	132, 798
TasI	AATT	2 cut(s)	588, 761
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	3 cut(s)	208, 302, 823
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	507, 853
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	507, 853
VpaK11BI	GGWCC	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.