Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

32223363 .. 32223776

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024128

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCGATAATCTCAGATATCCTAGACGAAAAAAACAAAAAACCAAACCAAGCTACAGTATCGGAGGAGGACAAAGGGAAAGTTCCAAACAAAGGGAATGGGATTGATTTGGAGAAATACTCATGGACACAAAGCCTGCAGGAGGTTAACGTACTGATTCCAGTGCCTGCTGGAACTAAGAAAAGGGATATTGTATATGAGTCCATCAAGCCTGATGATTGTCTGTGGAGCATAGAGGATCAGACTGCTGTCTCCATTCTTTTGACCAAGAAGAATCAACAGACCTGGCGGAAATCTTTGGTGAAAGGTGATCCCGATCGAGATAGACAGTCACAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

6.28

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	2 cut(s)	246, 305
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	92, 142
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	246, 305
AlwNI	CAGNNNCTG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	313, 320
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	2 cut(s)	54, 137
Bme1390I	CCNGG	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	286
BoxI	GACNNNNGTC	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BsaBI	GATNNNNATC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 142
Bse1I	ACTGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	286
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	92, 142
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	319
BsiEI	CGRYCG	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	92, 142
BsmAI	GTCTC	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	238, 310, 316
BspACI	CCGC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	2 cut(s)	246, 305
BsrI	ACTGG	1 cut(s)	161
BssMI	GATC	3 cut(s)	238, 310, 316
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	58, 330
BstC8I	GCNNGC	2 cut(s)	137, 168
BstDEI	CTNAG	2 cut(s)	13, 177
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	241, 313, 319
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	3 cut(s)	238, 310, 316
BstMCI	CGRYCG	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	286
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	2 cut(s)	54, 137
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	137, 168
CaiI	CAGNNNCTG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	3 cut(s)	53, 135, 211
CviKI_1	RGCY	3 cut(s)	53, 135, 211
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	2 cut(s)	13, 177
DpnI	GATC	3 cut(s)	240, 312, 318
DpnII	GATC	3 cut(s)	238, 310, 316
EciI	GGCGGA	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	19
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	1 cut(s)	126
FaiI	YATR	4 cut(s)	124, 196, 198, 233
FatI	CATG	1 cut(s)	122
FspBI	CTAG	1 cut(s)	23
Hin1II	CATG	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	157, 200, 274
HpaI	GTTAAC	1 cut(s)	148
HphI	GGTGA	2 cut(s)	313, 320
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	16, 64, 243
Hpy188III	TCNNGA	2 cut(s)	314, 320
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	58, 330
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	13, 177
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	126
KspAI	GTTAAC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	238, 310, 316
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	8 cut(s)	125, 149, 156, 174, 180, 225, 271, 298
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	3 cut(s)	240, 312, 318
MboI	GATC	3 cut(s)	238, 310, 316
MboII	GAAGA	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	58, 61, 136, 229
MseI	TTAA	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	238, 310, 316
NlaIII	CATG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	157, 274
Ple19I	CGATCG	1 cut(s)	319
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PshAI	GACNNNNGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	167
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	238, 310, 316
SbfI	CCTGCAGG	1 cut(s)	141
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	286
SdaI	CCTGCAGG	1 cut(s)	141
SetI	ASST	6 cut(s)	55, 147, 153, 287, 310, 340
SfcI	CTRYAG	2 cut(s)	54, 137
Sse8387I	CCTGCAGG	1 cut(s)	141
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	58, 330
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	157, 274
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	330
Tsp45I	GTSAC	1 cut(s)	330
TspRI	CASTG	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.