Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

22877068 .. 22880398

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGATCATCTCCGATATCCAAGAGGAGCAGCAACAGAAGTCTCCGCCGCAAGCCAAATCGGCGTCGGGTTCGGGTTCATCGTCGTCGGGGGCGAGAGTGGCGGCGACGTCGTTCAGCACGAAGTTCGATCGGAACAACACGTCGGGGTTTCTGGAGAAGGCGCTGGAGTTTCTGGCGCAGGAGAGCGATTTCATGCGGCGGCCGACGGCGGAGAGGGATCTGGTGGCGATTTTCAAGGCGGTGAGGGAGAGGGAGAGGAAGAAGATGGAGGAGGAGAGGAAGAAGAGGTGGGCGGAGGAGGAGGAGGAGAAGAAGAAGAAGGCGGAGGCGGAGGTGAAGGCTAAGGAGGAGGCGAAGGCGGAGACGAAGGTGGTGGCGGAGGAGAAGAAGGAGAAGGAGGCGGAGGAGAAGAAGGTGGAGGAGAAGAGTGGCAAGAGAGTTCCAAACAAAGGGAATGGGCTTGATTTGGAGAAATACTCATGGACCCAGAGTCTGCAGGAGGTTAATATAATCATCCCAGTGCCTGCTGGAACTAAATCAAGGGATATTGTTTATGAGGCAAAGAAGAACCGTCTGAAGTTTGGATTGAAGGGTCAGCCTCTTATAATTGATGGGGAGCTCTATCAGTCTATCAAGCCTGATGATTGCTTATGGAGCATAGAGGATCAAACTGCTGTCTCTATTCTCCTGACCAAACACAACCAACTGGAGTGGTGGAAAGCTCTGCTGAAAGGTGACCCTGAAATTGACACTCAAAAAGTTGAACCAGAGCCTAGCAAACTGTCGGACCTAGATTCAGAAACACGTCAAACTGTTGAGAAGATGATGTTTGACCAGCGGCAGAAGCAGATGGGCCTTCCAACCAGTGAGGAGATGCAGAAGCAGGAGATCTTGAAGAAATTTATGTCTGAGCATCCAGAAATGGACTTCTCAAGGGCCAAGATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

318

Amino Acids

36.35

Weight (kDa)

6.07

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	158 - 233	2.3e-20	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AatII	GACGTC	1 cut(s)	113
AclWI	GGATC	3 cut(s)	228, 675, 940
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	902
AcuI	CTGAAG	1 cut(s)	599
AcyI	GRCGYC	2 cut(s)	65, 110
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	2 cut(s)	141, 806
AgsI	TTSAA	4 cut(s)	238, 592, 767, 898
AhdI	GACNNNNNGTC	1 cut(s)	492
AjiI	CACGTC	2 cut(s)	144, 809
AluBI	AGCT	2 cut(s)	622, 725
AluI	AGCT	2 cut(s)	622, 725
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	3 cut(s)	48, 359, 685
AlwI	GGATC	3 cut(s)	228, 675, 940
AlwNI	CAGNNNCTG	2 cut(s)	496, 527
AoxI	GGCC	3 cut(s)	203, 856, 939
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	902
AspLEI	GCGC	2 cut(s)	166, 181
AspS9I	GGNCC	4 cut(s)	486, 790, 856, 939
AsuHPI	GGTGA	3 cut(s)	256, 349, 749
AvaII	GGWCC	2 cut(s)	486, 790
BanII	GRGCYC	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	262, 608, 847
BceAI	ACGGC	1 cut(s)	225
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BcoDI	GTCTC	3 cut(s)	48, 359, 685
BfaI	CTAG	2 cut(s)	777, 794
BfmI	CTRYAG	1 cut(s)	497
BfoI	RGCGCY	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	891
BisI	GCNGC	6 cut(s)	32, 50, 105, 200, 203, 842
BlsI	GCNGC	6 cut(s)	33, 51, 106, 201, 204, 843
Bme18I	GGWCC	2 cut(s)	486, 790
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmgBI	CACGTC	2 cut(s)	144, 809
BmgT120I	GGNCC	4 cut(s)	486, 790, 856, 939
BmiI	GGNNCC	1 cut(s)	488
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	867, 925
BmuI	ACTGGG	1 cut(s)	515
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	3 cut(s)	176, 188, 731
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	919
BsaHI	GRCGYC	2 cut(s)	65, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	4 cut(s)	521, 714, 867, 949
BseGI	GGATG	2 cut(s)	516, 916
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	4 cut(s)	521, 714, 867, 949
BseX3I	CGGCCG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	2 cut(s)	133, 206
BshFI	GGCC	3 cut(s)	205, 858, 941
BsiEI	CGRYCG	2 cut(s)	133, 206
BsiHKAI	GWGCWC	1 cut(s)	624
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	3 cut(s)	48, 359, 685
BsmBI	CGTCTC	1 cut(s)	359
BsnI	GGCC	3 cut(s)	205, 858, 941
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
BspANI	GGCC	3 cut(s)	205, 858, 941
BspCNI	CTCAG	1 cut(s)	904
BspLI	GGNNCC	1 cut(s)	488
BspMAI	CTGCAG	1 cut(s)	501
BspPI	GGATC	3 cut(s)	228, 675, 940
BsrI	ACTGG	4 cut(s)	521, 714, 867, 949
BssMI	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
BssNI	GRCGYC	2 cut(s)	65, 110
Bst4CI	ACNGT	3 cut(s)	575, 786, 817
Bst6I	CTCTTC	2 cut(s)	281, 422
BstACI	GRCGYC	2 cut(s)	65, 110
BstC8I	GCNNGC	2 cut(s)	54, 528
BstDEI	CTNAG	2 cut(s)	345, 912
BstEII	GGTNACC	1 cut(s)	737
BstF5I	GGATG	2 cut(s)	516, 916
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	166, 181
BstKTI	GATC	6 cut(s)	9, 133, 223, 670, 894, 948
BstMAI	GTCTC	3 cut(s)	48, 359, 685
BstMBI	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
BstMCI	CGRYCG	2 cut(s)	133, 206
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 101, 657, 847
BstPI	GGTNACC	1 cut(s)	737
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	3 cut(s)	220, 891, 945
BstYI	RGATCY	3 cut(s)	220, 891, 945
BstZI	CGGCCG	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	205, 858, 941
BtrI	CACGTC	2 cut(s)	144, 809
BtsCI	GGATG	2 cut(s)	516, 916
BtsIMutI	CAGTG	2 cut(s)	528, 874
Cac8I	GCNNGC	2 cut(s)	54, 528
CaiI	CAGNNNCTG	2 cut(s)	496, 527
CfoI	GCGC	2 cut(s)	166, 181
Cfr13I	GGNCC	4 cut(s)	486, 790, 856, 939
CseI	GACGC	1 cut(s)	54
CspCI	CAANNNNNGTGG	2 cut(s)	695, 730
CviAII	CATG	2 cut(s)	196, 483
DdeI	CTNAG	2 cut(s)	345, 912
DpnI	GATC	6 cut(s)	8, 132, 222, 669, 893, 947
DpnII	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
DriI	GACNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	203
EagI	CGGCCG	1 cut(s)	203
Eam1104I	CTCTTC	2 cut(s)	281, 422
Eam1105I	GACNNNNNGTC	1 cut(s)	492
EarI	CTCTTC	2 cut(s)	281, 422
EciI	GGCGGA	8 cut(s)	36, 227, 311, 341, 347, 377, 395, 419
Ecl136II	GAGCTC	1 cut(s)	622
EclXI	CGGCCG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	486, 790
Eco52I	CGGCCG	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	622
EcoO65I	GGTNACC	1 cut(s)	737
EcoRV	GATATC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	624
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	2 cut(s)	199, 486
FaiI	YATR	8 cut(s)	197, 484, 512, 558, 608, 655, 662, 908
FatI	CATG	2 cut(s)	195, 482
Fnu4HI	GCNGC	6 cut(s)	32, 50, 105, 200, 203, 842
FokI	GGATG	2 cut(s)	503, 903
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	6 cut(s)	32, 50, 105, 200, 203, 842
FspBI	CTAG	2 cut(s)	777, 794
GlaI	GCGC	2 cut(s)	165, 180
GluI	GCNGC	6 cut(s)	32, 50, 105, 200, 203, 842
GsuI	CTGGAG	3 cut(s)	176, 188, 731
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	205, 858, 941
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	2 cut(s)	166, 181
Hin1I	GRCGYC	2 cut(s)	65, 110
Hin1II	CATG	2 cut(s)	199, 486
Hin6I	GCGC	2 cut(s)	164, 179
HinP1I	GCGC	2 cut(s)	164, 179
HinfI	GANTC	2 cut(s)	493, 797
HphI	GGTGA	3 cut(s)	256, 349, 749
Hpy188I	TCNGA	6 cut(s)	16, 135, 579, 790, 802, 913
Hpy188III	TCNNGA	4 cut(s)	155, 691, 895, 920
Hpy99I	CGWCG	7 cut(s)	70, 88, 91, 112, 115, 148, 211
HpyCH4III	ACNGT	3 cut(s)	575, 786, 817
HpyCH4IV	ACGT	3 cut(s)	110, 143, 808
HpyCH4V	TGCA	2 cut(s)	499, 880
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 101, 657, 847
HpyF3I	CTNAG	2 cut(s)	345, 912
HpySE526I	ACGT	3 cut(s)	110, 143, 808
Hsp92I	GRCGYC	2 cut(s)	65, 110
Hsp92II	CATG	2 cut(s)	199, 486
HspAI	GCGC	2 cut(s)	164, 179
Kzo9I	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
LmnI	GCTCC	3 cut(s)	28, 619, 657
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	867, 925
MaeI	CTAG	2 cut(s)	777, 794
MaeII	ACGT	3 cut(s)	110, 143, 808
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	6 cut(s)	8, 132, 222, 669, 893, 947
MboI	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
MflI	RGATCY	3 cut(s)	220, 891, 945
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	3 cut(s)	609, 747, 902
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	2 cut(s)	768, 887
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	841
MwoI	GCNNNNNNNGC	4 cut(s)	62, 101, 657, 847
NdeII	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
NlaIII	CATG	2 cut(s)	199, 486
NlaIV	GGNNCC	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	3 cut(s)	80, 92, 119
PfeI	GAWTC	1 cut(s)	797
PkrI	GCNGC	6 cut(s)	33, 51, 106, 201, 204, 843
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	608
Psp124BI	GAGCTC	1 cut(s)	624
PspEI	GGTNACC	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	4 cut(s)	486, 790, 856, 939
PstI	CTGCAG	1 cut(s)	501
PstNI	CAGNNNCTG	2 cut(s)	496, 527
PsuI	RGATCY	3 cut(s)	220, 891, 945
PvuI	CGATCG	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	521
SacI	GAGCTC	1 cut(s)	624
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	6 cut(s)	32, 50, 105, 200, 203, 842
Sau3AI	GATC	6 cut(s)	6, 130, 220, 667, 891, 945
Sau96I	GGNCC	4 cut(s)	486, 790, 856, 939
SchI	GAGTC	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	867, 925
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	486, 790
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	934
SmoI	CTYRAG	1 cut(s)	934
Sse9I	AATT	3 cut(s)	609, 747, 902
SspMI	CTAG	2 cut(s)	777, 794
SstI	GAGCTC	1 cut(s)	624
TaaI	ACNGT	3 cut(s)	575, 786, 817
TaiI	ACGT	3 cut(s)	113, 146, 811
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	609, 747, 902
TauI	GCSGC	5 cut(s)	52, 107, 202, 205, 844
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	2 cut(s)	528, 874
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	2 cut(s)	69, 184
TspRI	CASTG	2 cut(s)	528, 874
VpaK11BI	GGWCC	2 cut(s)	486, 790
XapI	RAATTY	1 cut(s)	902
XspI	CTAG	2 cut(s)	777, 794
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.