Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8012830.1

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 337

Gene Structure 337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8012830.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

attgtttgtgagcatagaggatcagaccgctgtttccattcttttgaccaagaagaaccaacaggactggtggaagtctttagtgaaaggtgatcccgaaatagacactcaaaaggttgaacctgaacccagcaaactatccgacctggattctgaaacacgtcagactgtggagaagatgatgtttgatcagagacagaagcagaggggacttccaactagtgatgagctgcagaagcaggagctgttgaagaagttcatggctcagcacccagacatgcatggacttttcaaatgctatgatgatgcaataagttcacattcttttctacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

111

Amino Acids

12.94

Weight (kDa)

5.32

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	2 cut(s)	28, 87
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	3 cut(s)	120, 251, 293
AhlI	ACTAGT	1 cut(s)	219
AjiI	CACGTC	1 cut(s)	162
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	2 cut(s)	230, 245
AluI	AGCT	2 cut(s)	230, 245
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	28, 87
AlwNI	CAGNNNCTG	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	188
BcuI	ACTAGT	1 cut(s)	219
BfaI	CTAG	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	231
BlpI	GCTNAGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	147
BmgBI	CACGTC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	20, 92, 188
Bsp1720I	GCTNAGC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	2 cut(s)	28, 87
BsrI	ACTGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	20, 92, 188
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	23, 95, 191
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	20, 92, 188
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	162
CaiI	CAGNNNCTG	1 cut(s)	245
CviAII	CATG	3 cut(s)	260, 278, 282
CviJI	RGCY	3 cut(s)	230, 245, 264
CviKI_1	RGCY	3 cut(s)	230, 245, 264
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	3 cut(s)	22, 94, 190
DpnII	GATC	3 cut(s)	20, 92, 188
EcoRII	CCWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	283
FaeI	CATG	3 cut(s)	263, 281, 285
FaiI	YATR	5 cut(s)	15, 261, 279, 283, 301
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	259, 277, 281
FbaI	TGATCA	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	220
GluI	GCNGC	1 cut(s)	231
GsaI	CCCAGC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	263, 281, 285
HinfI	GANTC	1 cut(s)	150
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	5 cut(s)	25, 143, 155, 166, 193
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	233, 281, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	265
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	263, 281, 285
Ksp22I	TGATCA	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	20, 92, 188
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	8 cut(s)	48, 53, 132, 136, 143, 159, 225, 286
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	220
MaeII	ACGT	1 cut(s)	161
MalI	GATC	3 cut(s)	22, 94, 190
MboI	GATC	3 cut(s)	20, 92, 188
MboII	GAAGA	3 cut(s)	65, 188, 263
MmeI	TCCRAC	2 cut(s)	166, 240
MnlI	CCTC	2 cut(s)	11, 199
Mph1103I	ATGCAT	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	3 cut(s)	20, 92, 188
NlaIII	CATG	3 cut(s)	263, 281, 285
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	245
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	20, 92, 188
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	7 cut(s)	92, 118, 125, 148, 164, 232, 247
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.