Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

15757233 .. 15757994

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGATAATCTCTGACATCCAAGAAGACCAAAACGAAAACCAAGTAAAGGTTCCTTCTTCCCAGCCATCATTGGTCGAGGTTAAGGCAGAAGAGAAGAGGGTGAAGGAGGAAGACAAAGGGAAGAAGAGTGGCTTGAAAGTTCCAAACAAAGGGAATGGTCTTGATTTGGAGAAATACTCCTGGACGCAGAGCCTGCAGGAGGTTAACGTACTGATTCCAGTGCCTGCTGGAACTAAGAAAAGGGATGTTGTATACGAGGTGAAGACAAACCATCTCAAGTTTGGACTCAAAGGGCAGCCTCCTATAATTGATGGTTACCTCTTTCAGTCAATCAAGCCTGATGATTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

6.59

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	58 - 117	2.5e-15	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	3 cut(s)	49, 152, 202
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	182
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AlwNI	CAGNNNCTG	2 cut(s)	196, 227
ApeKI	GCWGC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	115, 274
BbsI	GAAGAC	3 cut(s)	33, 120, 272
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	3 cut(s)	76, 282, 308
BciT130I	CCWGG	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	197
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	1 cut(s)	184
BpiI	GAAGAC	3 cut(s)	33, 120, 272
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpuEI	CTTGAG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 152, 202
Bse1I	ACTGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	18, 253
BseLI	CCNNNNNNNGG	3 cut(s)	49, 152, 202
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	310
BseYI	CCCAGC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	49, 152, 202
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	221
BssNAI	GTATAC	1 cut(s)	256
Bst1107I	GTATAC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	184
Bst6I	CTCTTC	3 cut(s)	87, 92, 122
BstAPI	GCANNNNNTGC	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	197, 228
BstDEI	CTNAG	1 cut(s)	237
BstEII	GGTNACC	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	18, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	184
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	197
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	3 cut(s)	33, 120, 272
BstZ17I	GTATAC	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	18, 253
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	197, 228
CaiI	CAGNNNCTG	2 cut(s)	196, 227
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	212
CviJI	RGCY	5 cut(s)	67, 135, 195, 301, 340
CviKI_1	RGCY	5 cut(s)	67, 135, 195, 301, 340
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	237
Eam1104I	CTCTTC	3 cut(s)	87, 92, 122
EarI	CTCTTC	3 cut(s)	87, 92, 122
Eco91I	GGTNACC	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	182
FaiI	YATR	2 cut(s)	256, 308
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	2 cut(s)	5, 260
Fsp4HI	GCNGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	299
GsaI	CCCAGC	1 cut(s)	67
HgaI	GACGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	217, 288
HpaI	GTTAAC	1 cut(s)	208
HphI	GGTGA	2 cut(s)	115, 274
Hpy166II	GTNNAC	2 cut(s)	208, 256
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	2 cut(s)	208, 256
HpyAV	CCTTC	2 cut(s)	66, 100
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	210
KspAI	GTTAAC	1 cut(s)	208
LpnPI	CCDG	8 cut(s)	77, 169, 185, 196, 209, 216, 234, 240
Lsp1109I	GCAGC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	317
MboII	GAAGA	8 cut(s)	38, 51, 104, 109, 125, 136, 139, 277
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	7 cut(s)	73, 93, 103, 196, 253, 312, 332
MseI	TTAA	2 cut(s)	84, 207
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	182
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	201
PstNI	CAGNNNCTG	2 cut(s)	196, 227
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	84, 207
SatI	GCNGC	1 cut(s)	299
SbfI	CCTGCAGG	1 cut(s)	201
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	184
SdaI	CCTGCAGG	1 cut(s)	201
SetI	ASST	6 cut(s)	54, 84, 207, 213, 264, 324
SfcI	CTRYAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse8387I	CCTGCAGG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	182
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	84, 207
Tru9I	TTAA	2 cut(s)	84, 207
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	1 cut(s)	298
TspRI	CASTG	1 cut(s)	228
XagI	CCTNNNNNAGG	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.