Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Forward (+)

35019316 .. 35022062

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1289500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCTCATCTCACCGACTGTAGCACGCAGTATATATACACTCTCACTCCATCGTCCTCCCAAAACGCAAAAGCTTAAACCCTACACGCACCCGACCCTCGAAATCGAAAGACTCCGCTCAAATTCCCAAACTTTTATCGAATCCATGGCGATAATCTCCGACATCCAGGAGGAACAGAGCTCGCCCGAGACGAAGCCTTCGCAGGCGGCGGCGGCGGCGTCGTCGTCGTCGTCGTCGAAAGCGGCGACCTTTACCGCGAAGTTGGATCGCTCGAACCCTCTAGGGTTAGTGGAGAAGGTGTTGGAATTTCTTGCTCAGGAGAGCGATTTCTTCAAGAAGGAGACGGCGGAGAGGGAGGTCGCATCGATCGCGCGCGCCTTGAGGGAGAAGGAGAGGAAGAAGGAGGAGGAGGAGAGGAAGAAGAGGAGGCAGGCGGAGGAAGAGAGGAAGAAGAAGGCGGAGGCGGAGAAGAAGTCGAGCGAGGAGCCGAAGGCGGAAGTTAAAAAGGAGGAAACTGTGGAGGAGGGTAAGAAAGAGGAGGAGAGTAGCTTGAGAGTTCCGAACAAAGGGAATGGACTGGATTTGGAGAAATACTCGTGGACGCAGAGCCTACAGGAGGTTAATGTTGTTATTCCCGTGCCGACTGGAACTAAATCTAGGTTCGTTGTGTGTGAGATCAAAAAGAATCATCTGAAGTTTGGACTGAAGGGGCAGCCTCCGATCGTCGATGGTGAACTTTTTCAAGCTATCAAGCCTGATGATTGTTACTGGAGCATAGAGGACCAGAGTGCCGTCTCAATTCTACTGACCAAGCACAATCAAATGGAGTGGTGGAAAAGTCTGGTGAAAGGTGATCCTGAGATCGACACTCAAAAGGTTGAGCCTGAGCCCAGCAAACTGTCTGACCTGGATTCTGAAACACGCCAGACTGTTGAAAAGATGATGTTTGACCAGAGACAGAAGCAGATGGGGCTCCCCACTAGCGAGGAGATGCAAAAACAGGAAATCTTAAAGAAGTTCATGTCCGAGCATCCGGAGATGGACTTCTCAAGGGCCAAGATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

356

Amino Acids

40.64

Weight (kDa)

6.34

Isoelectric Point (pI)

62.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	196 - 271	4.7e-21	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	117
AccII	CGCG	4 cut(s)	257, 371, 373, 375
AccIII	TCCGGA	1 cut(s)	1033
AclWI	GGATC	2 cut(s)	273, 848
AcsI	RAATTY	2 cut(s)	121, 305
AcuI	CTGAAG	2 cut(s)	713, 725
AcyI	GRCGYC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	566, 616
AgsI	TTSAA	3 cut(s)	334, 743, 935
AjnI	CCWGG	2 cut(s)	165, 906
AluBI	AGCT	4 cut(s)	73, 180, 549, 746
AluI	AGCT	4 cut(s)	73, 180, 549, 746
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	4 cut(s)	182, 335, 799, 949
AlwI	GGATC	2 cut(s)	273, 848
Ama87I	CYCGRG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	1033
AoxI	GGCC	1 cut(s)	1053
ApeKI	GCWGC	1 cut(s)	712
ApoI	RAATTY	2 cut(s)	121, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	3 cut(s)	373, 375, 377
AspS9I	GGNCC	2 cut(s)	781, 1053
AsuHPI	GGTGA	4 cut(s)	3, 743, 856, 863
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	781
BanII	GRGCYC	3 cut(s)	182, 891, 975
BauI	CACGAG	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	4 cut(s)	57, 722, 961, 1033
BceAI	ACGGC	2 cut(s)	360, 776
BciT130I	CCWGG	2 cut(s)	167, 908
BcoDI	GTCTC	4 cut(s)	182, 335, 799, 949
BfaI	CTAG	3 cut(s)	281, 657, 981
BfmI	CTRYAG	2 cut(s)	18, 611
BisI	GCNGC	6 cut(s)	207, 210, 213, 216, 243, 713
BlsI	GCNGC	6 cut(s)	208, 211, 214, 217, 244, 714
Bme1390I	CCNGG	2 cut(s)	167, 908
Bme18I	GGWCC	1 cut(s)	781
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	781, 1053
BmiI	GGNNCC	2 cut(s)	486, 974
BmrFI	CCNGG	2 cut(s)	167, 908
BmsI	GCATC	3 cut(s)	371, 981, 1039
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	1 cut(s)	790
Bpu10I	CCTNAGC	2 cut(s)	315, 885
BpuEI	CTTGAG	3 cut(s)	400, 571, 1033
Bsa29I	ATCGAT	1 cut(s)	365
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	1033
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 284, 314, 458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 616
Bse1I	ACTGG	3 cut(s)	582, 649, 773
BseAI	TCCGGA	1 cut(s)	1033
BseBI	CCWGG	2 cut(s)	167, 908
BseCI	ATCGAT	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	162, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	566, 616
BseMII	CTCAG	3 cut(s)	329, 849, 876
BseNI	ACTGG	3 cut(s)	582, 649, 773
BsePI	GCGCGC	2 cut(s)	371, 373
BseRI	GAGGAG	9 cut(s)	419, 422, 425, 439, 497, 536, 551, 554, 1001
BseXI	GCAGC	1 cut(s)	724
BseYI	CCCAGC	1 cut(s)	890
Bsh1236I	CGCG	4 cut(s)	257, 371, 373, 375
Bsh1285I	CGRYCG	2 cut(s)	369, 723
BshFI	GGCC	1 cut(s)	1055
BshVI	ATCGAT	1 cut(s)	365
BsiEI	CGRYCG	2 cut(s)	369, 723
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	1034
BslI	CCNNNNNNNGG	2 cut(s)	566, 616
BsmAI	GTCTC	4 cut(s)	182, 335, 799, 949
BsmBI	CGTCTC	3 cut(s)	182, 335, 799
BsnI	GGCC	1 cut(s)	1055
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	182, 891, 975
Bsp13I	TCCGGA	1 cut(s)	1033
Bsp143I	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	1055
BspCNI	CTCAG	3 cut(s)	328, 850, 877
BspDI	ATCGAT	1 cut(s)	365
BspEI	TCCGGA	1 cut(s)	1033
BspFNI	CGCG	4 cut(s)	257, 371, 373, 375
BspLI	GGNNCC	2 cut(s)	486, 974
BspPI	GGATC	2 cut(s)	273, 848
BsrBI	CCGCTC	1 cut(s)	117
BsrI	ACTGG	3 cut(s)	582, 649, 773
BssECI	CCNNGG	1 cut(s)	144
BssHII	GCGCGC	2 cut(s)	371, 373
BssMI	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
BssNI	GRCGYC	1 cut(s)	218
BssSI	CACGAG	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	167, 908
Bst4CI	ACNGT	5 cut(s)	19, 517, 900, 931, 1065
Bst6I	CTCTTC	2 cut(s)	416, 435
BstACI	GRCGYC	1 cut(s)	218
BstC8I	GCNNGC	6 cut(s)	25, 182, 204, 373, 375, 432
BstDEI	CTNAG	3 cut(s)	315, 858, 885
BstDSI	CCRYGG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstF5I	GGATG	2 cut(s)	162, 1030
BstFNI	CGCG	4 cut(s)	257, 371, 373, 375
BstHHI	GCGC	3 cut(s)	373, 375, 377
BstKTI	GATC	6 cut(s)	268, 369, 678, 723, 856, 864
BstMAI	GTCTC	4 cut(s)	182, 335, 799, 949
BstMBI	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
BstMCI	CGRYCG	2 cut(s)	369, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 215, 368, 970
BstNI	CCWGG	2 cut(s)	167, 908
BstSCI	CCNGG	2 cut(s)	165, 906
BstSFI	CTRYAG	2 cut(s)	18, 611
BstUI	CGCG	4 cut(s)	257, 371, 373, 375
BstV1I	GCAGC	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	1055
BsuTUI	ATCGAT	1 cut(s)	365
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	162, 1030
Cac8I	GCNNGC	6 cut(s)	25, 182, 204, 373, 375, 432
CfoI	GCGC	3 cut(s)	373, 375, 377
Cfr13I	GGNCC	2 cut(s)	781, 1053
ClaI	ATCGAT	1 cut(s)	365
CseI	GACGC	2 cut(s)	207, 610
CspCI	CAANNNNNGTGG	2 cut(s)	809, 844
CviAII	CATG	2 cut(s)	145, 1021
DdeI	CTNAG	3 cut(s)	315, 858, 885
DpnI	GATC	6 cut(s)	267, 368, 677, 722, 855, 863
DpnII	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
Eam1104I	CTCTTC	2 cut(s)	416, 435
EarI	CTCTTC	2 cut(s)	416, 435
EciI	GGCGGA	5 cut(s)	362, 449, 473, 479, 509
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	3 cut(s)	182, 891, 975
Eco47I	GGWCC	1 cut(s)	781
Eco53kI	GAGCTC	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	713, 725
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	165, 906
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	3 cut(s)	182, 891, 975
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	3 cut(s)	182, 335, 799
FaeI	CATG	2 cut(s)	148, 1024
FaiI	YATR	6 cut(s)	32, 34, 36, 146, 776, 1022
FatI	CATG	2 cut(s)	144, 1020
Fnu4HI	GCNGC	6 cut(s)	207, 210, 213, 216, 243, 713
FokI	GGATG	2 cut(s)	149, 1017
FriOI	GRGCYC	3 cut(s)	182, 891, 975
Fsp4HI	GCNGC	6 cut(s)	207, 210, 213, 216, 243, 713
FspBI	CTAG	3 cut(s)	281, 657, 981
GlaI	GCGC	3 cut(s)	372, 374, 376
GluI	GCNGC	6 cut(s)	207, 210, 213, 216, 243, 713
GsaI	CCCAGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	790
HaeIII	GGCC	1 cut(s)	1055
HapII	CCGG	1 cut(s)	1034
HgaI	GACGC	2 cut(s)	207, 610
HhaI	GCGC	3 cut(s)	373, 375, 377
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	148, 1024
Hin6I	GCGC	3 cut(s)	371, 373, 375
HinP1I	GCGC	3 cut(s)	371, 373, 375
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	111, 140, 685, 911
HpaII	CCGG	1 cut(s)	1034
HphI	GGTGA	4 cut(s)	3, 743, 856, 863
Hpy166II	GTNNAC	2 cut(s)	600, 734
Hpy188I	TCNGA	7 cut(s)	160, 561, 693, 720, 904, 916, 1027
Hpy188III	TCNNGA	4 cut(s)	317, 334, 857, 1034
Hpy8I	GTNNAC	2 cut(s)	600, 734
Hpy99I	CGWCG	7 cut(s)	223, 226, 229, 232, 235, 238, 728
HpyAV	CCTTC	8 cut(s)	207, 289, 331, 382, 394, 448, 484, 700
HpyCH4III	ACNGT	5 cut(s)	19, 517, 900, 931, 1065
HpyCH4V	TGCA	1 cut(s)	994
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 215, 368, 970
HpyF3I	CTNAG	3 cut(s)	315, 858, 885
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	148, 1024
HspAI	GCGC	3 cut(s)	371, 373, 375
Kpn2I	TCCGGA	1 cut(s)	1033
Kzo9I	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
LmnI	GCTCC	3 cut(s)	484, 771, 978
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	3 cut(s)	371, 981, 1039
MaeI	CTAG	3 cut(s)	281, 657, 981
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	6 cut(s)	267, 368, 677, 722, 855, 863
MauBI	CGCGCGCG	1 cut(s)	371
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
MboII	GAAGA	8 cut(s)	322, 409, 430, 433, 452, 460, 463, 481
MhlI	GDGCHC	3 cut(s)	182, 891, 975
MluCI	AATT	3 cut(s)	121, 305, 798
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	3 cut(s)	183, 243, 282
MroI	TCCGGA	1 cut(s)	1033
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	4 cut(s)	75, 501, 621, 1010
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	2 cut(s)	167, 908
MvaI	CCWGG	2 cut(s)	167, 908
MvnI	CGCG	4 cut(s)	257, 371, 373, 375
MwoI	GCNNNNNNNGC	4 cut(s)	212, 215, 368, 970
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
NlaIII	CATG	2 cut(s)	148, 1024
NlaIV	GGNNCC	2 cut(s)	486, 974
PauI	GCGCGC	2 cut(s)	371, 373
PcsI	WCGNNNNNNNCGW	5 cut(s)	188, 227, 230, 233, 242
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	3 cut(s)	140, 685, 911
PfoI	TCCNGGA	1 cut(s)	165
PkrI	GCNGC	6 cut(s)	208, 211, 214, 217, 244, 714
Ple19I	CGATCG	2 cut(s)	369, 723
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	165, 906
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	2 cut(s)	165, 906
PspN4I	GGNNCC	2 cut(s)	486, 974
PspPI	GGNCC	2 cut(s)	781, 1053
PteI	GCGCGC	2 cut(s)	371, 373
PvuI	CGATCG	2 cut(s)	369, 723
SacI	GAGCTC	1 cut(s)	182
SaqAI	TTAA	4 cut(s)	75, 501, 621, 1010
SatI	GCNGC	6 cut(s)	207, 210, 213, 216, 243, 713
Sau3AI	GATC	6 cut(s)	265, 366, 675, 720, 853, 861
Sau96I	GGNCC	2 cut(s)	781, 1053
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	2 cut(s)	167, 908
SduI	GDGCHC	3 cut(s)	182, 891, 975
SfaNI	GCATC	3 cut(s)	371, 981, 1039
SfcI	CTRYAG	2 cut(s)	18, 611
SinI	GGWCC	1 cut(s)	781
SmlI	CTYRAG	3 cut(s)	379, 550, 1048
SmoI	CTYRAG	3 cut(s)	379, 550, 1048
Sse9I	AATT	3 cut(s)	121, 305, 798
SspMI	CTAG	3 cut(s)	281, 657, 981
SstI	GAGCTC	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	165, 906
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	5 cut(s)	19, 517, 900, 931, 1065
TaqI	TCGA	9 cut(s)	99, 105, 138, 236, 272, 365, 476, 726, 864
TasI	AATT	3 cut(s)	121, 305, 798
TauI	GCSGC	5 cut(s)	209, 212, 215, 218, 245
TfiI	GAWTC	3 cut(s)	140, 685, 911
Tru1I	TTAA	4 cut(s)	75, 501, 621, 1010
Tru9I	TTAA	4 cut(s)	75, 501, 621, 1010
TseI	GCWGC	1 cut(s)	712
TspDTI	ATGAA	1 cut(s)	1009
VpaK11BI	GGWCC	1 cut(s)	781
XagI	CCTNNNNNAGG	1 cut(s)	614
XapI	RAATTY	2 cut(s)	121, 305
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	3 cut(s)	281, 657, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.