Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005241.1

Orthogroup ID

OG0001992

Physical Location & Seq

Genomic Coordinates Reverse (-)

33624 .. 34286

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005241.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggctataatttcagacttccaagaagaacaaaaccaaactgaaaccaaagtcaccacaccaccctctgagtcatcatcatcgctcaaggcagaagagaaaaaggtcaaggtggaggaggacaaagggaaaggctcgaaattagttccgaacaaagggaatgggcttgatctggaaaagtactcatggacacagagcctgcaagaggttaatatagtgatcccagtgcctgccggaactaaatcaagggatattgtgtacgaggcaaaggcgaagcatctcaagtttggactcaaaggtcagccagctcctattatcgacggtgatctgtttcagtctatcaagcccgatgagtgtttgtggagcatagaggatcagagtgctgtctctattctcttgacaaagcaaaaccaaacggactggtggaagtctttgttgaaaggtgatccggagattgacactcaaaaggttgaacctgagcccagcaaactgtccgacctggattcagagacgcgccggacggttgagaagatgatgtttgatcagaggcagaagcagatggggcgtcctaccagtgatgagatgcagcagcaggagttgttgaagaagttcatggaacagaatccgaacatggacttttcaaaggttaagatgatgcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0007275 GO:0007389 GO:0008150 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009880 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010229 GO:0010286 GO:0010450 GO:0022414 GO:0032501 GO:0032502 GO:0035266 GO:0040007 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048507 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051082 GO:0061458 GO:0065007 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

220

Amino Acids

25.06

Weight (kDa)

5.21

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27890 AT5G53400
fragaria_vesca	FvH4_1g23100 FvH4_1g24630 FvH4_7g31690
malus_domestica	MD01G1220500.v1.1 MD07G1289500.v1.1
prunus_persica	Prupe.2G310800_v2.0.a1 Prupe.7G105200_v2.0.a1
pyrus_communis	pycom01g23010 pycom07g26230
rosa_chinensis	RchiOBHm_Chr1g0380871 RchiOBHm_Chr2g0117791 RchiOBHm_Chr3g0471811
rosa_laevigata	RLG00000018374 RLG00000024126 RLG00000024128 RLG00000026266
rosa_multiflora	Rmu_co8012830.1_g000001 Rmu_sc0002570.1_g000001 Rmu_sc0002962.1_g000016 Rmu_sc0004622.1_g000002 Rmu_sc0005241.1_g000009
rosa_roxburghii	Rroxscaffold_2G00126210 Rroxscaffold_4G00279000 Rroxscaffold_6G00409530 Rroxscaffold_7G00214800
rosa_rugosa	Rorug01G0424600 Rorug01G0424600 Rorug02G0214200 Rorug05G0519100
rosa_samantha	Rh1BG404600 Rh1DG435000 Rh2AG270200 Rh2BG281700 Rh2CG269800 Rh2DG278100 Rh2DG295900 Rh3AG171300 Rh3CG187800 Rh3DG177500
rosa_wichuraiana	Rw1G039130 Rw2G021350 Rw3G016870 Rw3G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	297
AccII	CGCG	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	448
AclWI	GGATC	3 cut(s)	214, 381, 440
AcyI	GRCGYC	1 cut(s)	565
AfaI	GTAC	2 cut(s)	182, 260
AfiI	CCNNNNNNNGG	2 cut(s)	155, 205
AgsI	TTSAA	4 cut(s)	439, 473, 604, 642
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	391, 503
AlwI	GGATC	3 cut(s)	214, 381, 440
AlwNI	CAGNNNCTG	2 cut(s)	199, 230
Aor13HI	TCCGGA	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	586, 589
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	516
AsuHPI	GGTGA	3 cut(s)	46, 335, 455
BanII	GRGCYC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	598, 601
BccI	CCATC	1 cut(s)	553
BciT130I	CCWGG	1 cut(s)	500
BclI	TGATCA	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	391, 503
BisI	GCNGC	2 cut(s)	587, 590
BlsI	GCNGC	2 cut(s)	588, 591
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	500
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	3 cut(s)	286, 573, 645
BmuI	ACTGGG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	477
BpuEI	CTTGAG	2 cut(s)	71, 266
BsaHI	GRCGYC	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 205
Bse1I	ACTGG	3 cut(s)	224, 425, 573
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	500
BseLI	CCNNNNNNNGG	2 cut(s)	155, 205
BseMII	CTCAG	2 cut(s)	60, 468
BseNI	ACTGG	3 cut(s)	224, 425, 573
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	598, 601
BseYI	CCCAGC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	514
BsiSI	CCGG	3 cut(s)	234, 449, 517
BslI	CCNNNNNNNGG	2 cut(s)	155, 205
BsmAI	GTCTC	2 cut(s)	391, 503
BsmBI	CGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
BspCNI	CTCAG	2 cut(s)	61, 469
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	514
BspPI	GGATC	3 cut(s)	214, 381, 440
BsrI	ACTGG	3 cut(s)	224, 425, 573
BssMI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
BssNI	GRCGYC	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	3 cut(s)	323, 492, 523
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	565
BstC8I	GCNNGC	3 cut(s)	200, 231, 306
BstDEI	CTNAG	2 cut(s)	69, 477
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	514
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	6 cut(s)	172, 222, 328, 376, 448, 544
BstMAI	GTCTC	2 cut(s)	391, 503
BstMBI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	598, 601
BtgZI	GCGATG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	231, 580
Cac8I	GCNNGC	3 cut(s)	200, 231, 306
CaiI	CAGNNNCTG	2 cut(s)	199, 230
CfoI	GCGC	1 cut(s)	516
CseI	GACGC	2 cut(s)	520, 554
Csp6I	GTAC	2 cut(s)	181, 259
CviAII	CATG	3 cut(s)	186, 613, 631
CviJI	RGCY	8 cut(s)	5, 135, 166, 198, 304, 308, 346, 481
CviKI_1	RGCY	8 cut(s)	5, 135, 166, 198, 304, 308, 346, 481
CviQI	GTAC	2 cut(s)	181, 259
DdeI	CTNAG	2 cut(s)	69, 477
DpnI	GATC	6 cut(s)	171, 221, 327, 375, 447, 543
DpnII	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	3 cut(s)	189, 616, 634
FaiI	YATR	6 cut(s)	8, 187, 215, 368, 614, 632
FatI	CATG	3 cut(s)	185, 612, 630
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	587, 590
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	2 cut(s)	587, 590
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	2 cut(s)	587, 590
GsaI	CCCAGC	1 cut(s)	486
HapII	CCGG	3 cut(s)	234, 449, 517
HgaI	GACGC	2 cut(s)	520, 554
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	565
Hin1II	CATG	3 cut(s)	189, 616, 634
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HinfI	GANTC	4 cut(s)	71, 291, 503, 622
HpaII	CCGG	3 cut(s)	234, 449, 517
HphI	GGTGA	3 cut(s)	46, 335, 455
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	8 cut(s)	16, 70, 150, 378, 496, 508, 546, 627
Hpy188III	TCNNGA	3 cut(s)	173, 397, 449
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4III	ACNGT	3 cut(s)	323, 492, 523
HpyCH4V	TGCA	3 cut(s)	202, 586, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	2 cut(s)	69, 477
Hsp92I	GRCGYC	1 cut(s)	565
Hsp92II	CATG	3 cut(s)	189, 616, 634
HspAI	GCGC	1 cut(s)	514
Kpn2I	TCCGGA	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
LmnI	GCTCC	2 cut(s)	313, 363
Lsp1109I	GCAGC	2 cut(s)	598, 601
LweI	GCATC	3 cut(s)	286, 573, 645
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	6 cut(s)	171, 221, 327, 375, 447, 543
MboI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
MboII	GAAGA	4 cut(s)	38, 107, 541, 616
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	2 cut(s)	9, 140
MlyI	GAGTC	2 cut(s)	80, 285
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	7 cut(s)	76, 109, 112, 199, 256, 364, 540
MroI	TCCGGA	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	2 cut(s)	210, 648
MspI	CCGG	3 cut(s)	234, 449, 517
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	562
NdeII	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
NlaIII	CATG	3 cut(s)	189, 616, 634
NmuCI	GTSAC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	2 cut(s)	503, 622
PkrI	GCNGC	2 cut(s)	588, 591
PleI	GAGTC	2 cut(s)	79, 285
PpsI	GAGTC	2 cut(s)	79, 285
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	498
PstNI	CAGNNNCTG	2 cut(s)	199, 230
RsaI	GTAC	2 cut(s)	182, 260
RsaNI	GTAC	2 cut(s)	181, 259
SaqAI	TTAA	2 cut(s)	210, 648
SatI	GCNGC	2 cut(s)	587, 590
Sau3AI	GATC	6 cut(s)	169, 219, 325, 373, 445, 541
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	80, 285
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	3 cut(s)	286, 573, 645
SmlI	CTYRAG	2 cut(s)	86, 281
SmoI	CTYRAG	2 cut(s)	86, 281
Sse9I	AATT	2 cut(s)	9, 140
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	323, 492, 523
TaqI	TCGA	2 cut(s)	137, 318
TasI	AATT	2 cut(s)	9, 140
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	503, 622
Tru1I	TTAA	2 cut(s)	210, 648
Tru9I	TTAA	2 cut(s)	210, 648
TscAI	CASTG	2 cut(s)	231, 580
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	586, 589
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	601
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	231, 580
XagI	CCTNNNNNAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	608
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.